mRNA_H-elongata_contig165936.4150.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165936.4150.1
Unique NamemRNA_H-elongata_contig165936.4150.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165936.4150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165936contigH-elongata_contig165936:212..970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size497
Cds size495
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.9674654-CDS-H-elongata_contig165936:213..4751622929970.9674654-CDS-H-elongata_contig165936:213..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165936 214..475 -
1691679229.1418438-CDS-H-elongata_contig165936:213..4751691679229.1418438-CDS-H-elongata_contig165936:213..475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165936 214..475 -
1622929970.979862-CDS-H-elongata_contig165936:737..9701622929970.979862-CDS-H-elongata_contig165936:737..970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165936 738..970 -
1691679229.1529572-CDS-H-elongata_contig165936:737..9701691679229.1529572-CDS-H-elongata_contig165936:737..970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165936 738..970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165936.4150.1prot_H-elongata_contig165936.4150.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165936 214..970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165936.4150.1

>prot_H-elongata_contig165936.4150.1 ID=prot_H-elongata_contig165936.4150.1|Name=mRNA_H-elongata_contig165936.4150.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp
HRASHLVHIARERSRRQLLVKVWKVWLGLLEERRMRGAVIIATSSLEGQR
VSLTRLCHRLKLERAMRLILSVAEKSERARLRGGWQALQQMTRKRAILVR
FVTVMFRSRLQLLRGVLYHWRVFAAEDRAADARAEAGRPVLSACFAGVSR
RSMQPAWESWCELIK
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mRNA from alignment at H-elongata_contig165936:212..970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165936.4150.1 ID=mRNA_H-elongata_contig165936.4150.1|Name=mRNA_H-elongata_contig165936.4150.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at H-elongata_contig165936:212..970- (Himanthalia elongata Himel1 dioecious)
CATCGCGCGAGTCATCTGGTACATATTGCCCGTGAGCGCTCTCGGAGACA
GCTTCTGGTTAAGGTGTGGAAAGTGTGGCTCGGGTTGCTGGAGGAACGCA
GAATGCGAGGCGCGGTCATTATTGCAACCTCATCGCTCGAGGGGCAGAGG
GTTTCCTTAACAAGGCTTTGCCATCGCCTGAAACTGGAGAGAGCCATGCG
GCTGATATTGTCCGTGGCAGAAAAGTCGGAGAGGTAAGGCAGGATGTCAC
CGCGGCGATTTTGATTTTGCAAAAGAACATGCGCGTTTTTGTTTCATGTA
CGGTGCAAAAGCAAAGGCCAAAATATTTTTAAGTGAAGTTGTTTGTTTAC
ACATCTTGTTTCGAGTCACGCGTCCGTTGGACGTGCAAAAGTGTAGTTCC
GTACCTTGCCTGCAAGCTAGTAGGATGCCTTTGCCGTGCCTCTACGATCA
GTCGTTCGTAATATATCCACCGGCCGCTGCTAACTCGTTAAACAGGGCGC
GTCTTCGAGGAGGCTGGCAAGCACTGCAACAGATGACGCGCAAGCGTGCA
ATCCTTGTCCGCTTCGTGACAGTGATGTTCCGGTCTCGCTTGCAGCTGCT
CCGTGGTGTACTGTACCACTGGCGTGTCTTTGCCGCCGAAGACCGTGCGG
CTGACGCTCGCGCAGAGGCCGGCCGACCCGTGCTTTCGGCGTGCTTTGCA
GGCGTGAGCAGACGGTCGATGCAGCCCGCTTGGGAATCGTGGTGTGAACT
GATCAAGAA
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Coding sequence (CDS) from alignment at H-elongata_contig165936:212..970-

>mRNA_H-elongata_contig165936.4150.1 ID=mRNA_H-elongata_contig165936.4150.1|Name=mRNA_H-elongata_contig165936.4150.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig165936:212..970- (Himanthalia elongata Himel1 dioecious)
CATCGCGCGAGTCATCTGGTACATATTGCCCGTGAGCGCTCTCGGAGACA
GCTTCTGGTTAAGGTGTGGAAAGTGTGGCTCGGGTTGCTGGAGGAACGCA
GAATGCGAGGCGCGGTCATTATTGCAACCTCATCGCTCGAGGGGCAGAGG
GTTTCCTTAACAAGGCTTTGCCATCGCCTGAAACTGGAGAGAGCCATGCG
GCTGATATTGTCCGTGGCAGAAAAGTCGGAGAGCATCGCGCGAGTCATCT
GGTACATATTGCCCGTGAGCGCTCTCGGAGACAGCTTCTGGTTAAGGTGT
GGAAAGTGTGGCTCGGGTTGCTGGAGGAACGCAGAATGCGAGGCGCGGTC
ATTATTGCAACCTCATCGCTCGAGGGGCAGAGGGTTTCCTTAACAAGGCT
TTGCCATCGCCTGAAACTGGAGAGAGCCATGCGGCTGATATTGTCCGTGG
CAGAAAAGTCGGAGAGGGCGCGTCTTCGAGGAGGCTGGCAAGCACTGCAA
CAGATGACGCGCAAGCGTGCAATCCTTGTCCGCTTCGTGACAGTGATGTT
CCGGTCTCGCTTGCAGCTGCTCCGTGGTGTACTGTACCACTGGCGTGTCT
TTGCCGCCGAAGACCGTGCGGCTGACGCTCGCGCAGAGGCCGGCCGACCC
GTGCTTTCGGCGTGCTTTGCAGGCGTGAGCAGACGGTCGATGCAGCCCGC
TTGGGAATCGTGGTGTGAACTGATCAAGGGCGCGTCTTCGAGGAGGCTGG
CAAGCACTGCAACAGATGACGCGCAAGCGTGCAATCCTTGTCCGCTTCGT
GACAGTGATGTTCCGGTCTCGCTTGCAGCTGCTCCGTGGTGTACTGTACC
ACTGGCGTGTCTTTGCCGCCGAAGACCGTGCGGCTGACGCTCGCGCAGAG
GCCGGCCGACCCGTGCTTTCGGCGTGCTTTGCAGGCGTGAGCAGACGGTC
GATGCAGCCCGCTTGGGAATCGTGGTGTGAACTGATCAAG
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