mRNA_H-elongata_contig165882.4149.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165882.4149.1
Unique NamemRNA_H-elongata_contig165882.4149.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165882.4149.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165882contigH-elongata_contig165882:695..1403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size709
Cds size561
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165882.4149.1prot_H-elongata_contig165882.4149.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165882 726..1286 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.880633-UTR-H-elongata_contig165882:694..7251622929970.880633-UTR-H-elongata_contig165882:694..725Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165882 695..725 +
1691679229.1170921-UTR-H-elongata_contig165882:694..7251691679229.1170921-UTR-H-elongata_contig165882:694..725Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165882 695..725 +
1622929970.917548-UTR-H-elongata_contig165882:1286..14031622929970.917548-UTR-H-elongata_contig165882:1286..1403Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165882 1287..1403 +
1691679229.1344516-UTR-H-elongata_contig165882:1286..14031691679229.1344516-UTR-H-elongata_contig165882:1286..1403Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165882 1287..1403 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.897789-CDS-H-elongata_contig165882:725..12861622929970.897789-CDS-H-elongata_contig165882:725..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165882 726..1286 +
1691679229.127289-CDS-H-elongata_contig165882:725..12861691679229.127289-CDS-H-elongata_contig165882:725..1286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165882 726..1286 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165882.4149.1

>prot_H-elongata_contig165882.4149.1 ID=prot_H-elongata_contig165882.4149.1|Name=mRNA_H-elongata_contig165882.4149.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=187bp
MRFKLQHQTAKSTSTNHFPALAHFHQLLKDGGRNRSRNSLAPRVAGSKSA
ASFTNILGNIDSVQIGHISLFGLRRLLRTGQPTAASVIGEGFHAHICVGS
SHYGCPLLSHCCTGCHRTHKVFIHIIVHATLVETPLMILLGRRRPVSCFF
VHKNMGCRKSYIWFDSSFTIFPGRNCDISIFHLKKH*
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mRNA from alignment at H-elongata_contig165882:695..1403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165882.4149.1 ID=mRNA_H-elongata_contig165882.4149.1|Name=mRNA_H-elongata_contig165882.4149.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=709bp|location=Sequence derived from alignment at H-elongata_contig165882:695..1403+ (Himanthalia elongata Himel1 dioecious)
CTACCAAAATATTATTACCGAATTTTGAAAAATGCGGTTTAAGCTGCAAC
ACCAAACAGCAAAGAGCACCTCCACGAACCACTTTCCTGCCCTCGCGCAC
TTCCATCAGCTCCTTAAAGACGGCGGTCGGAATCGCTCCCGAAACAGCTT
GGCGCCTCGCGTGGCGGGGTCAAAAAGCGCCGCCTCGTTCACTAACATCC
TGGGAAACATCGACTCCGTACAGATCGGACACATCTCGCTGTTTGGTCTT
AGGCGGCTTCTCCGTACGGGCCAACCAACCGCTGCCTCTGTAATTGGTGA
GGGTTTTCACGCCCATATTTGTGTCGGCAGCTCCCATTACGGTTGCCCAC
TCCTGAGCCATTGTTGCACCGGCTGCCATCGCACCCACAAAGTCTTCATT
CATATCATCGTCCATGCCACACTGGTGGAAACTCCCCTTATGATACTTTT
AGGGAGGCGTCGTCCAGTTTCGTGTTTTTTCGTTCACAAGAATATGGGAT
GCCGAAAATCGTATATTTGGTTTGACAGCTCTTTCACGATTTTTCCGGGA
CGGAATTGTGATATTTCTATTTTTCATTTAAAAAAACATTGAACTCATTC
CAACCCTCCGAACATCCACGCCTTCTTAACACCATGAGAGGTGCAGTCCA
GGGGACCAACTATCGTCAGGTTCGAATGTGTTCAATACTAACCTTGAGTA
CAAAATCTT
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Coding sequence (CDS) from alignment at H-elongata_contig165882:695..1403+

>mRNA_H-elongata_contig165882.4149.1 ID=mRNA_H-elongata_contig165882.4149.1|Name=mRNA_H-elongata_contig165882.4149.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1122bp|location=Sequence derived from alignment at H-elongata_contig165882:695..1403+ (Himanthalia elongata Himel1 dioecious)
ATGCGGTTTAAGCTGCAACACCAAACAGCAAAGAGCACCTCCACGAACCA
CTTTCCTGCCCTCGCGCACTTCCATCAGCTCCTTAAAGACGGCGGTCGGA
ATCGCTCCCGAAACAGCTTGGCGCCTCGCGTGGCGGGGTCAAAAAGCGCC
GCCTCGTTCACTAACATCCTGGGAAACATCGACTCCGTACAGATCGGACA
CATCTCGCTGTTTGGTCTTAGGCGGCTTCTCCGTACGGGCCAACCAACCG
CTGCCTCTGTAATTGGTGAGGGTTTTCACGCCCATATTTGTGTCGGCAGC
TCCCATTACGGTTGCCCACTCCTGAGCCATTGTTGCACCGGCTGCCATCG
CACCCACAAAGTCTTCATTCATATCATCGTCCATGCCACACTGGTGGAAA
CTCCCCTTATGATACTTTTAGGGAGGCGTCGTCCAGTTTCGTGTTTTTTC
GTTCACAAGAATATGGGATGCCGAAAATCGTATATTTGGTTTGACAGCTC
TTTCACGATTTTTCCGGGACGGAATTGTGATATTTCTATTTTTCATTTAA
AAAAACATTGAATGCGGTTTAAGCTGCAACACCAAACAGCAAAGAGCACC
TCCACGAACCACTTTCCTGCCCTCGCGCACTTCCATCAGCTCCTTAAAGA
CGGCGGTCGGAATCGCTCCCGAAACAGCTTGGCGCCTCGCGTGGCGGGGT
CAAAAAGCGCCGCCTCGTTCACTAACATCCTGGGAAACATCGACTCCGTA
CAGATCGGACACATCTCGCTGTTTGGTCTTAGGCGGCTTCTCCGTACGGG
CCAACCAACCGCTGCCTCTGTAATTGGTGAGGGTTTTCACGCCCATATTT
GTGTCGGCAGCTCCCATTACGGTTGCCCACTCCTGAGCCATTGTTGCACC
GGCTGCCATCGCACCCACAAAGTCTTCATTCATATCATCGTCCATGCCAC
ACTGGTGGAAACTCCCCTTATGATACTTTTAGGGAGGCGTCGTCCAGTTT
CGTGTTTTTTCGTTCACAAGAATATGGGATGCCGAAAATCGTATATTTGG
TTTGACAGCTCTTTCACGATTTTTCCGGGACGGAATTGTGATATTTCTAT
TTTTCATTTAAAAAAACATTGA
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