mRNA_H-elongata_contig165824.4147.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165824.4147.1
Unique NamemRNA_H-elongata_contig165824.4147.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig165824.4147.1 vs. uniprot
Match: A0A6H5LC46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC46_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 1.510e-44
Identity = 109/239 (45.61%), Postives = 127/239 (53.14%), Query Frame = 1 
Query:    1 VLPQVRSRVDGDEARLLSGEFPFRQTWAGPAGGHPTEERGKYTDRGGGCVI--------GRRDHGDPRTRCKVALDVTVEHGGGDDGKNCDARSAATFRGIENGDR----TSGTAGLVLLPCFVHGVVNVSIHAFDSAFDSTGGRAAIGAERDGGL-------FARLRVLEGTRVDALFKQDTRRALDVCGGSQLRIYDPCCVFPGEAEGGRGGRA--LLMCTQLCEPFPACFPPLADP 654
            +L QVR+R DGDEARLLSGEFPFRQ    P+    +   G       G  +         RRD+GDPRTRC VALD TV         +        + G E  +       G +GLV   CFVH VV+VS+    +     G R A  A  D          F  L  LEG RVD LFKQDTRRA+DV  GSQLRIYDP CV+     GG GGRA  LL+CTQLCEP+P+C P L  P
Sbjct:  390 LLQQVRARCDGDEARLLSGEFPFRQ----PSSASKSTTGGNNNSHLDGVGVXXXXSGAKSRRDYGDPRTRCSVALDATVMLPAATPRGSSVGFEGGLWGGGEGNELGQAGRGGASGLVWFSCFVHHVVDVSLGLGGNRV-RPGSRCATSAAGDAAGWSSVATDFGCLHRLEGVRVDGLFKQDTRRAVDVGPGSQLRIYDPSCVWYDAEVGGEGGRAEALLVCTQLCEPYPSCLPALPSP 623
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BLAST of mRNA_H-elongata_contig165824.4147.1 vs. uniprot
Match: D7FXF5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 6.730e-33
Identity = 103/219 (47.03%), Postives = 116/219 (52.97%), Query Frame = 1 
Query:    1 VLPQVRSRVDGDEARLLSGEFPFRQ-TWAGPAGGHPTEERGKYTDRGGGCVI----GRRDHGDPRTRCKVALDVTVEHGGGDDGKNCDARSAATFRGIENGDRTS----------------GTAGLVLLPCFVHGVVNVSIHAFDSAFDSTGGR---AAIG-AERDGGL---FARLRVLEGTRVDALFKQDTRRALDVCGGSQLRIYDPCCVFPGEAEG 573
            +L QVR+R DGDEARLLSGEFPFRQ + A  A        G   D G G        RRD GDPRTRC+VALD TV               AAT RG   G                    G  GLV   CFVH VV+VS+    S   S G R   +A+G A    G+   F RL  LEG RVD +FKQDTRRA+DV  GSQLRIYDPCCV+  +AEG
Sbjct: 1025 LLQQVRARCDGDEARLLSGEFPFRQPSSASKATTSXXXXXGHLDDVGVGXXXXGGKSRRDPGDPRTRCRVALDATV------------MLPAATPRGPSVGFEGGLWGGGEGNELGQAGGGGVTGLVRFSCFVHHVVDVSLSLGGSRV-SPGSRRVTSAVGYAAGPSGVATDFGRLHRLEGVRVDGIFKQDTRRAVDVGPGSQLRIYDPCCVWY-DAEG 1229
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165824.4147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LC46_9PHAE1.510e-4445.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXF5_ECTSI6.730e-3347.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165824contigH-elongata_contig165824:636..1301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003010.1
Exons1
Model size666
Cds size666
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.745234-CDS-H-elongata_contig165824:635..13011622929970.745234-CDS-H-elongata_contig165824:635..1301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165824 636..1301 -
1691679229.0695436-CDS-H-elongata_contig165824:635..13011691679229.0695436-CDS-H-elongata_contig165824:635..1301Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165824 636..1301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165824.4147.1prot_H-elongata_contig165824.4147.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165824 636..1301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165824.4147.1

>prot_H-elongata_contig165824.4147.1 ID=prot_H-elongata_contig165824.4147.1|Name=mRNA_H-elongata_contig165824.4147.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=222bp
VLPQVRSRVDGDEARLLSGEFPFRQTWAGPAGGHPTEERGKYTDRGGGCV
IGRRDHGDPRTRCKVALDVTVEHGGGDDGKNCDARSAATFRGIENGDRTS
GTAGLVLLPCFVHGVVNVSIHAFDSAFDSTGGRAAIGAERDGGLFARLRV
LEGTRVDALFKQDTRRALDVCGGSQLRIYDPCCVFPGEAEGGRGGRALLM
CTQLCEPFPACFPPLADPPDA*
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mRNA from alignment at H-elongata_contig165824:636..1301-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165824.4147.1 ID=mRNA_H-elongata_contig165824.4147.1|Name=mRNA_H-elongata_contig165824.4147.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=666bp|location=Sequence derived from alignment at H-elongata_contig165824:636..1301- (Himanthalia elongata Himel1 dioecious)
GTGTTACCGCAGGTGAGGTCGCGAGTCGACGGCGACGAGGCCCGTCTTCT
GTCGGGGGAGTTCCCGTTCCGCCAAACGTGGGCTGGTCCTGCGGGTGGTC
ATCCCACCGAAGAAAGAGGAAAATACACCGACCGTGGCGGAGGCTGTGTA
ATCGGCCGTCGAGATCATGGCGACCCTCGCACTCGTTGCAAAGTCGCGTT
GGACGTCACTGTGGAACATGGCGGTGGCGACGACGGCAAGAATTGCGACG
CCAGGAGTGCAGCGACGTTCCGAGGGATCGAGAACGGCGACCGGACGAGC
GGGACTGCTGGATTGGTGCTTCTGCCGTGCTTTGTTCACGGGGTTGTGAA
CGTCTCTATTCACGCCTTCGATAGCGCCTTCGATAGCACGGGAGGAAGGG
CTGCGATTGGTGCTGAGCGCGATGGGGGCCTGTTCGCACGTCTTCGGGTC
TTGGAGGGCACTCGGGTGGATGCTTTGTTCAAACAAGACACTCGCAGAGC
GCTCGACGTGTGCGGTGGCTCCCAGCTCCGAATTTATGATCCGTGCTGCG
TTTTTCCCGGCGAGGCGGAGGGGGGGAGAGGGGGGCGCGCGCTGCTGATG
TGCACTCAGCTTTGCGAGCCATTTCCTGCCTGTTTTCCTCCGCTGGCCGA
CCCGCCAGATGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig165824:636..1301-

>mRNA_H-elongata_contig165824.4147.1 ID=mRNA_H-elongata_contig165824.4147.1|Name=mRNA_H-elongata_contig165824.4147.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1332bp|location=Sequence derived from alignment at H-elongata_contig165824:636..1301- (Himanthalia elongata Himel1 dioecious)
GTGTTACCGCAGGTGAGGTCGCGAGTCGACGGCGACGAGGCCCGTCTTCT
GTCGGGGGAGTTCCCGTTCCGCCAAACGTGGGCTGGTCCTGCGGGTGGTC
ATCCCACCGAAGAAAGAGGAAAATACACCGACCGTGGCGGAGGCTGTGTA
ATCGGCCGTCGAGATCATGGCGACCCTCGCACTCGTTGCAAAGTCGCGTT
GGACGTCACTGTGGAACATGGCGGTGGCGACGACGGCAAGAATTGCGACG
CCAGGAGTGCAGCGACGTTCCGAGGGATCGAGAACGGCGACCGGACGAGC
GGGACTGCTGGATTGGTGCTTCTGCCGTGCTTTGTTCACGGGGTTGTGAA
CGTCTCTATTCACGCCTTCGATAGCGCCTTCGATAGCACGGGAGGAAGGG
CTGCGATTGGTGCTGAGCGCGATGGGGGCCTGTTCGCACGTCTTCGGGTC
TTGGAGGGCACTCGGGTGGATGCTTTGTTCAAACAAGACACTCGCAGAGC
GCTCGACGTGTGCGGTGGCTCCCAGCTCCGAATTTATGATCCGTGCTGCG
TTTTTCCCGGCGAGGCGGAGGGGGGGAGAGGGGGGCGCGCGCTGCTGATG
TGCACTCAGCTTTGCGAGCCATTTCCTGCCTGTTTTCCTCCGCTGGCCGA
CCCGCCAGATGCATGAGTGTTACCGCAGGTGAGGTCGCGAGTCGACGGCG
ACGAGGCCCGTCTTCTGTCGGGGGAGTTCCCGTTCCGCCAAACGTGGGCT
GGTCCTGCGGGTGGTCATCCCACCGAAGAAAGAGGAAAATACACCGACCG
TGGCGGAGGCTGTGTAATCGGCCGTCGAGATCATGGCGACCCTCGCACTC
GTTGCAAAGTCGCGTTGGACGTCACTGTGGAACATGGCGGTGGCGACGAC
GGCAAGAATTGCGACGCCAGGAGTGCAGCGACGTTCCGAGGGATCGAGAA
CGGCGACCGGACGAGCGGGACTGCTGGATTGGTGCTTCTGCCGTGCTTTG
TTCACGGGGTTGTGAACGTCTCTATTCACGCCTTCGATAGCGCCTTCGAT
AGCACGGGAGGAAGGGCTGCGATTGGTGCTGAGCGCGATGGGGGCCTGTT
CGCACGTCTTCGGGTCTTGGAGGGCACTCGGGTGGATGCTTTGTTCAAAC
AAGACACTCGCAGAGCGCTCGACGTGTGCGGTGGCTCCCAGCTCCGAATT
TATGATCCGTGCTGCGTTTTTCCCGGCGAGGCGGAGGGGGGGAGAGGGGG
GCGCGCGCTGCTGATGTGCACTCAGCTTTGCGAGCCATTTCCTGCCTGTT
TTCCTCCGCTGGCCGACCCGCCAGATGCATGA
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