mRNA_H-elongata_contig165733.4143.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165733.4143.1
Unique NamemRNA_H-elongata_contig165733.4143.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig165733.4143.1 vs. uniprot
Match: UPI000DF4DD00 (uncharacterized protein LOC112899548 n=1 Tax=Panicum hallii TaxID=206008 RepID=UPI000DF4DD00)

HSP 1 Score: 57.8 bits (138), Expect = 9.510e-8
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 1
Query:   22 KAGDFAGKVFLEQARS--LTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARMSSETMSKLVYVRTN 270
            K G FA KV     +    + A WW   G   +P L   A+R+LS++ +A+GCERNWS    +   K  R++ E + +LV+VR N
Sbjct:   82 KVGHFAKKVAQAGCKDYDFSLAKWWSNYGTQ-VPTLQKFAIRILSLISSASGCERNWSCFEGIHTKKRNRLTCERVEQLVFVRFN 165          
BLAST of mRNA_H-elongata_contig165733.4143.1 vs. uniprot
Match: A0A843UCJ9_COLES (BED-type domain-containing protein n=4 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UCJ9_COLES)

HSP 1 Score: 57.0 bits (136), Expect = 2.380e-7
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1
Query:  115 PELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARMSSETMSKLVYVRTNLQL 279
            P+LAYVA+RVLS   +A GCERNWS  G +   +  R+ S  + KLV+   N++L
Sbjct:  645 PDLAYVAIRVLSQTTSATGCERNWSTFGLIHTKQRNRLKSARLEKLVFCHYNMRL 699          
BLAST of mRNA_H-elongata_contig165733.4143.1 vs. uniprot
Match: A0A7I8K756_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K756_SPIIN)

HSP 1 Score: 56.2 bits (134), Expect = 4.360e-7
Identity = 31/87 (35.63%), Postives = 47/87 (54.02%), Query Frame = 1
Query:   28 GDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARMSSETMSKLVYVRTNLQLMYR 288
            GDF  K+ +    +L    WW T G  G P LA +A+R+LS   +A GCER+      + + +   +  + +S L+YVR NL+L  R
Sbjct:  582 GDFGRKMAIRARHTLLPGEWWSTYGG-GCPNLARLAIRILSQTCSARGCERSRIPFEQMHSQRKNHLEHQRLSDLIYVRYNLRLQQR 667          
BLAST of mRNA_H-elongata_contig165733.4143.1 vs. uniprot
Match: A0A6G1D8I2_9ORYZ (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1D8I2_9ORYZ)

HSP 1 Score: 55.8 bits (133), Expect = 5.290e-7
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARMSSETMSKLVYVRTNLQLMYR 288
            QF+ F  K G FA     + A +     WWG+ G    P LA VA+RVLS   +++  ER WS    + + K  +++++T  KLV++ +NL+L+ R
Sbjct:  214 QFSEFISKKGFFALPAAKQDAYNKDAIDWWGSYGSQ-TPNLAEVAMRVLSQPISSSSAERIWSTYEYIHSAKRNKLNAKTADKLVFIHSNLRLVSR 308          
BLAST of mRNA_H-elongata_contig165733.4143.1 vs. uniprot
Match: A0A6G1BLP3_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BLP3_9ORYZ)

HSP 1 Score: 55.8 bits (133), Expect = 5.920e-7
Identity = 34/96 (35.42%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARMSSETMSKLVYVRTNLQLMYR 288
            QF+ F  K G FA     + A +     WWG+ G    P LA VA+RVLS   +++  ER WS    + + K  +++++T  KLV++ +NL+L+ R
Sbjct:  580 QFSEFISKKGFFALPAAKQDAYNKDAIDWWGSYGSQ-TPNLAEVAMRVLSQPISSSSAERIWSTYEYIHSAKRNKLNAKTADKLVFIHSNLRLVSR 674          
BLAST of mRNA_H-elongata_contig165733.4143.1 vs. uniprot
Match: UPI001CB8B12A (uncharacterized protein LOC122603007 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8B12A)

HSP 1 Score: 55.1 bits (131), Expect = 1.070e-6
Identity = 33/96 (34.38%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARMSSETMSKLVYVRTNLQLMYR 288
            Q+A F  K G +A K     A ++    WW T G    P+LA VA++VLS   +++  ERNWS    +   K  R++S+   KLV++ +N++   R
Sbjct:  330 QYAFFHTKKGIYAKKTTQADAMTMDPIDWWSTYGS-ATPQLAEVAIKVLSQPISSSSAERNWSTYSHIHNVKRNRLNSKRADKLVFIHSNIRCQSR 424          
BLAST of mRNA_H-elongata_contig165733.4143.1 vs. uniprot
Match: UPI001CF7C3F7 (uncharacterized protein LOC123019268 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF7C3F7)

HSP 1 Score: 54.3 bits (129), Expect = 2.060e-6
Identity = 28/96 (29.17%), Postives = 53/96 (55.21%), Query Frame = 1
Query:    1 MAQFARFKAGD--FAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARMSSETMSKLVYVRTNLQLM 282
            M   A ++A +  ++  +    + +++   WW   G     +L+ VA+R+LS+ P AA C++NW    ++ A K  R+++E  +KL+ V  NL L+
Sbjct:  529 MTDIAEYRAKEKLWSQDIIWRASENVSPLTWWK--GYCNTRQLSRVAIRILSIPPTAASCQKNWKAFNSINAKKRNRLTNERTAKLISVSQNLSLL 622          
BLAST of mRNA_H-elongata_contig165733.4143.1 vs. uniprot
Match: UPI000B426496 (uncharacterized protein LOC8079746 n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B426496)

HSP 1 Score: 53.5 bits (127), Expect = 3.840e-6
Identity = 31/96 (32.29%), Postives = 53/96 (55.21%), Query Frame = 1
Query:    7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARMSSETMSKLVYVRTNLQLMYR 288
            QF  F  K G +A     + A ++    WW T G    P+LA +A+++LS   +++  ER WS    V + K  +++++   KLVY+ +NL+L+ R
Sbjct:  570 QFTHFISKKGMYALSSVKQDAYNMDAIDWWETYGSE-TPDLAAIAIKILSQPISSSSAERIWSTYEYVHSAKRNKLNAKNADKLVYIHSNLRLLSR 664          
BLAST of mRNA_H-elongata_contig165733.4143.1 vs. uniprot
Match: UPI0009C04824 (uncharacterized protein LOC110006618 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0009C04824)

HSP 1 Score: 52.4 bits (124), Expect = 4.510e-6
Identity = 28/83 (33.73%), Postives = 42/83 (50.60%), Query Frame = 1
Query:   31 DFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARMSSETMSKLVYVRTNLQL 279
             F   + L Q      A WW   G    P L  +A+R+LS++ A++GCERNWS    V   +  R+     + L++VR N +L
Sbjct:  104 SFGKDMALRQRNEEESAQWWRQHGSSA-PNLQKMAMRILSLITASSGCERNWSSFEMVHTKRRNRLEQRKPNDLIFVRENQRL 185          
BLAST of mRNA_H-elongata_contig165733.4143.1 vs. uniprot
Match: A0A803N423_CHEQI (Transmembrane protein 147 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803N423_CHEQI)

HSP 1 Score: 53.1 bits (126), Expect = 5.300e-6
Identity = 33/99 (33.33%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    7 QFARFKA-----GDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARMSSETMSKLVYVRTNLQLMYR 288
            Q A+F+A     G  A K+    A +++  +WW T G    PELA +A++VLS   +++  ER WS    +   K  R++S    KLV++  N++L+ R
Sbjct:  519 QLAKFQAKEGIFGSLAAKI---DAVTMSPISWWSTYGSEA-PELAEIAIKVLSQPISSSSAERVWSTYSFIHNAKRNRLNSVRADKLVFIHCNIRLISR 613          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165733.4143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
UPI000DF4DD009.510e-837.65uncharacterized protein LOC112899548 n=1 Tax=Panic... [more]
A0A843UCJ9_COLES2.380e-747.27BED-type domain-containing protein n=4 Tax=Colocas... [more]
A0A7I8K756_SPIIN4.360e-735.63Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A6G1D8I2_9ORYZ5.290e-735.42Dimer_Tnp_hAT domain-containing protein n=1 Tax=Or... [more]
A0A6G1BLP3_9ORYZ5.920e-735.42Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]
UPI001CB8B12A1.070e-634.38uncharacterized protein LOC122603007 n=1 Tax=Erige... [more]
UPI001CF7C3F72.060e-629.17uncharacterized protein LOC123019268 n=1 Tax=Varan... [more]
UPI000B4264963.840e-632.29uncharacterized protein LOC8079746 n=1 Tax=Sorghum... [more]
UPI0009C048244.510e-633.73uncharacterized protein LOC110006618 n=1 Tax=Ambor... [more]
A0A803N423_CHEQI5.300e-633.33Transmembrane protein 147 n=1 Tax=Chenopodium quin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165733contigH-elongata_contig165733:127..414 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score67.0
Seed ortholog evalue5.4e-09
Seed eggNOG ortholog6412.HelroP160342
EggNOG free text desc.hAT family C-terminal dimerisation region
EggNOG OGs2E3R9@1,2SARV@2759,3AEAR@33154,3BW16@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size288
Cds size288
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929970.5690632-CDS-H-elongata_contig165733:126..4141622929970.5690632-CDS-H-elongata_contig165733:126..414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165733 127..414 -
1691679229.0107634-CDS-H-elongata_contig165733:126..4141691679229.0107634-CDS-H-elongata_contig165733:126..414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165733 127..414 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165733.4143.1prot_H-elongata_contig165733.4143.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165733 127..414 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165733.4143.1

>prot_H-elongata_contig165733.4143.1 ID=prot_H-elongata_contig165733.4143.1|Name=mRNA_H-elongata_contig165733.4143.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
MAQFARFKAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLS
MVPAAAGCERNWSLMGAVTAGKHARMSSETMSKLVYVRTNLQLMYR
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mRNA from alignment at H-elongata_contig165733:127..414-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165733.4143.1 ID=mRNA_H-elongata_contig165733.4143.1|Name=mRNA_H-elongata_contig165733.4143.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=288bp|location=Sequence derived from alignment at H-elongata_contig165733:127..414- (Himanthalia elongata Himel1 dioecious)
ATGGCCCAGTTTGCGAGGTTCAAGGCAGGTGACTTTGCGGGTAAGGTTTT TCTCGAGCAAGCAAGGTCTCTTACGGGAGCGGCGTGGTGGGGTACACTAG GCAAGATGGGCTTGCCGGAGCTGGCGTACGTGGCTGTTCGTGTTCTCTCG ATGGTGCCAGCCGCTGCTGGGTGTGAGCGGAACTGGAGCCTGATGGGGGC TGTCACCGCCGGCAAGCACGCGCGCATGAGCTCTGAAACCATGTCGAAGC TGGTTTACGTGCGCACCAACCTTCAGCTGATGTACCGC
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Coding sequence (CDS) from alignment at H-elongata_contig165733:127..414-

>mRNA_H-elongata_contig165733.4143.1 ID=mRNA_H-elongata_contig165733.4143.1|Name=mRNA_H-elongata_contig165733.4143.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig165733:127..414- (Himanthalia elongata Himel1 dioecious)
ATGGCCCAGTTTGCGAGGTTCAAGGCAGGTGACTTTGCGGGTAAGGTTTT
TCTCGAGCAAGCAAGGTCTCTTACGGGAGCGGCGTGGTGGGGTACACTAG
GCAAGATGGGCTTGCCGGAGCTGGCGTACGTGGCTGTTCGTGTTCTCTCG
ATGGTGCCAGCCGCTGCTGGGTGTGAGCGGAACTGGAGCCTGATGGGGGC
TGTCACCGCCGGCAAGCACGCGCGCATGAGCTCTGAAACCATGTCGAAGC
TGGTTTACGTGCGCACCAACCTTCAGCTGATGTACCGCATGGCCCAGTTT
GCGAGGTTCAAGGCAGGTGACTTTGCGGGTAAGGTTTTTCTCGAGCAAGC
AAGGTCTCTTACGGGAGCGGCGTGGTGGGGTACACTAGGCAAGATGGGCT
TGCCGGAGCTGGCGTACGTGGCTGTTCGTGTTCTCTCGATGGTGCCAGCC
GCTGCTGGGTGTGAGCGGAACTGGAGCCTGATGGGGGCTGTCACCGCCGG
CAAGCACGCGCGCATGAGCTCTGAAACCATGTCGAAGCTGGTTTACGTGC
GCACCAACCTTCAGCTGATGTACCGC
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