mRNA_H-elongata_contig16568.4139.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16568.4139.1
Unique NamemRNA_H-elongata_contig16568.4139.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16568.4139.1 vs. uniprot
Match: D7G2H0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2H0_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.570e-34
Identity = 69/110 (62.73%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:    1 MDKAVDFLTQNWNYGPEVCLAAFSLFHSAR----------------------------VRKIEKAEGKPIFWAESLVLTFFMAFGGGILAPFLLGKPPVIFVNDLIVPLV 246
            M+ AVDFLTQNW YG EVCLAAF+LFHSAR                            VRKIEK  GK +FWAESLV+T+ MAFGGGILAPFLLGKPPV+FVNDLIVPLV
Sbjct:    1 MENAVDFLTQNWEYGAEVCLAAFALFHSAREIKQACDALRLACAGSGALTFKQKAKILVRKIEKDSGKQMFWAESLVMTYMMAFGGGILAPFLLGKPPVMFVNDLIVPLV 110
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BLAST of mRNA_H-elongata_contig16568.4139.1 vs. uniprot
Match: A0A835Z0I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0I7_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.060e-20
Identity = 46/79 (58.23%), Postives = 58/79 (73.42%), Query Frame = 1 
Query:    1 MDKAVDFLTQNWNYGPEVCLAAFSLFHSARVRKIEKAEGKPIFWAESLVLTFFMAFGGGILAPFLLGKPPVIFVNDLIV 237
            +D A DFL Q+  Y PEVCL  ++L  +ARV+       K ++WA+SLVLTF M FGGGI+APFLLGKPPVI +NDL+V
Sbjct:    7 LDTAHDFLLQDLPYMPEVCLFIYALVGAARVKS---GPAKNMYWAQSLVLTFLMCFGGGIVAPFLLGKPPVILINDLLV 82
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BLAST of mRNA_H-elongata_contig16568.4139.1 vs. uniprot
Match: A0A4D9CX56_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CX56_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.100e-8
Identity = 36/81 (44.44%), Postives = 43/81 (53.09%), Query Frame = 1 
Query:    4 DKAVDFLTQNWNYGPEVCLAAFSLFHSARVRKIEKAEGKPIFWAESLVLTFFMAFGGGILAPFLLGKPPVIFVNDLIVPLV 246
            + A  FL   + Y  EVCL AF L  S RVR   +       W   LVL F   F GG + P   G+ PV+FVNDL+VPLV
Sbjct:   16 EVARKFLLMQYPYEFEVCLFAFCLGASMRVRPSAQYS-----WLHHLVLVFLTGFAGGTIIPMFFGRTPVLFVNDLLVPLV 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16568.4139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2H0_ECTSI1.570e-3462.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0I7_9STRA4.060e-2058.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4D9CX56_9STRA1.100e-844.44Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16568contigH-elongata_contig16568:20..1139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.9
Seed ortholog evalue2.2e-27
Seed eggNOG ortholog2880.D7G2H0
EggNOG OGs2BW3U@1,2SEWS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005940.1
Exons2
Model size246
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.7413812-CDS-H-elongata_contig16568:19..1751622929969.7413812-CDS-H-elongata_contig16568:19..175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16568 20..175 -
1691679228.6272943-CDS-H-elongata_contig16568:19..1751691679228.6272943-CDS-H-elongata_contig16568:19..175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16568 20..175 -
1622929969.8081126-CDS-H-elongata_contig16568:1049..11391622929969.8081126-CDS-H-elongata_contig16568:1049..1139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16568 1050..1139 -
1691679228.637371-CDS-H-elongata_contig16568:1049..11391691679228.637371-CDS-H-elongata_contig16568:1049..1139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16568 1050..1139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16568.4139.1prot_H-elongata_contig16568.4139.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16568 20..1139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16568.4139.1

>prot_H-elongata_contig16568.4139.1 ID=prot_H-elongata_contig16568.4139.1|Name=mRNA_H-elongata_contig16568.4139.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MDKAVDFLTQNWNYGPEVCLAAFSLFHSARVRKIEKAEGKPIFWAESLVL
TFFMAFGGGILAPFLLGKPPVIFVNDLIVPLV
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mRNA from alignment at H-elongata_contig16568:20..1139-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16568.4139.1 ID=mRNA_H-elongata_contig16568.4139.1|Name=mRNA_H-elongata_contig16568.4139.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1120bp|location=Sequence derived from alignment at H-elongata_contig16568:20..1139- (Himanthalia elongata Himel1 dioecious)
ATGGACAAGGCAGTGGACTTCTTGACGCAGAATTGGAACTATGGTCCGGA
GGTCTGCCTGGCGGCGTTTTCCCTCTTCCACTCGGCGAGAGTGAGTTATC
TTATGTATGAAGCACCCTCCGGAACTTCTGTTTATAGACATGAACGTTGA
CTAAGAACGCACCTCAGCAACTCTAAGCAATGGCTTGTAGTCACTGTCGC
CGACGCCACCGACGTTGCTGCTTCTGAGCCTGCCTCTTCTACCTCACATG
TCTCTCGATTTGCGCCGGAAGATGCCCGCGCTATCGATCGAACTTCGTGA
GTAGCGAAAATCGATCTGTATTGCTTTGATGTTGTAGTAGGAATAATATA
TCTACTGAAGAGGGGACACCGAAGGAGCTGTGAGCAGCGGTCTTCGGTTA
CACAGCAGCCCCATCTCGAGAGCTGATCAGCTACTCTCTTTATTATCTTG
TGCCAACGTGGGTTGGAAGAGTCCCAGTCGTTCCTGGTGTCGGAATGGAG
ACAGACGAACCCGTCTCCGAAGTATTTTTGCATCAGATTGAGGAATGCCC
ATTTAATTTTAACGATCGCTAGAGCTACAGAGCCTACTCTCCTCCCTCTT
ACACATGACGCCGCACAAGACAGCCTCCAAGCGGAAGCTGATATATGAAA
CCTTCAACCGCGTGCGATACACGTGGTGAGCCCCCCTCCCCCTCCCGCCA
ACAACTTGACTCGATTCAAAAGCCTACACGCTCTACTTTACGTAACCGCT
GTAGCCACCTCCTGCAATATTCAGAGCGAAGGTGAACGTTACTTTTTTCT
ACAACGGCCCCAGGCGTTCGGGGGAGGCTCGTGTAATGACTCTCGCGGTG
CTATAGGAGAATTGCGTAGGGACAATAAGCCCTTTCTCGCATACTCGCGC
ACACGCGTCACCCAAAGGCACCAACCAAGCTCGAGCACGAAATCCTACAC
GTGCTCCGTGGCAGGTACGCAAAATAGAGAAGGCAGAGGGGAAACCGATT
TTCTGGGCGGAGTCGCTCGTGCTCACCTTCTTCATGGCGTTCGGCGGCGG
AATCTTGGCGCCGTTTCTGCTGGGCAAGCCGCCGGTCATCTTCGTCAACG
ACTTGATCGTTCCGCTCGTG
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Coding sequence (CDS) from alignment at H-elongata_contig16568:20..1139-

>mRNA_H-elongata_contig16568.4139.1 ID=mRNA_H-elongata_contig16568.4139.1|Name=mRNA_H-elongata_contig16568.4139.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig16568:20..1139- (Himanthalia elongata Himel1 dioecious)
ATGGACAAGGCAGTGGACTTCTTGACGCAGAATTGGAACTATGGTCCGGA
GGTCTGCCTGGCGGCGTTTTCCCTCTTCCACTCGGCGAGAATGGACAAGG
CAGTGGACTTCTTGACGCAGAATTGGAACTATGGTCCGGAGGTCTGCCTG
GCGGCGTTTTCCCTCTTCCACTCGGCGAGAGTACGCAAAATAGAGAAGGC
AGAGGGGAAACCGATTTTCTGGGCGGAGTCGCTCGTGCTCACCTTCTTCA
TGGCGTTCGGCGGCGGAATCTTGGCGCCGTTTCTGCTGGGCAAGCCGCCG
GTCATCTTCGTCAACGACTTGATCGTTCCGCTCGTGGTACGCAAAATAGA
GAAGGCAGAGGGGAAACCGATTTTCTGGGCGGAGTCGCTCGTGCTCACCT
TCTTCATGGCGTTCGGCGGCGGAATCTTGGCGCCGTTTCTGCTGGGCAAG
CCGCCGGTCATCTTCGTCAACGACTTGATCGTTCCGCTCGTG
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