mRNA_H-elongata_contig165671.4137.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165671.4137.1
Unique NamemRNA_H-elongata_contig165671.4137.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.770e-43
Identity = 81/111 (72.97%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
            EGVL WWKR E SYPLLAR ARVVF APAS  V ERD    GRMMTSSRS+ DAKYV+M+LFLHGN+DL+PE I ELPADGVNG Q+KIP RLSN + EL  L G FGPVD
Sbjct:  647 EGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVD 757          
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 1.160e-39
Identity = 78/111 (70.27%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
            EGVL WWK+W   YPLLARAARVVFGAPAS+AVLERDF D   MM SSRS+ DAKYV+M+LFLHGNLDLIPE I EL  + V   Q+KIP RLSN +PEL GL G  G VD
Sbjct:  545 EGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRLSNPIPELHGLDGTLGLVD 652          
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 4.970e-38
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
            E VL WWK W  +YPLLAR ARVVFGAPAS+AVLERDF + GRMMTSSRS+ D+KYV+MI+FLHGNLDLIPEDI +L       A++KIP RL+N +  L+ L G F PVD
Sbjct:  605 EDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAA---ARTKIPGRLANPVERLEQLDGVFAPVD 712          
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 6.580e-37
Identity = 72/99 (72.73%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPE-RLSNTLP 294
            + VL WWKRW SSYPLLARAARVVFGAPAS+AVLE DF D GR+MTSSRS+TDAKYV+MILFLHGNLDLIPEDI   PA      Q   P  RL+NT P
Sbjct:   35 DSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI---PA-----CQPTAPSARLTNTCP 125          
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 3.010e-36
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1
Query:    1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
            E VL WWK W  +YPLLAR ARVV GA AS+AVLE DF + GRMMTSSRS+ D+KYV+MILFLHGNLDLIPEDI +L  + V  A++KIP RL+N +  L+ L GAF PVD
Sbjct:  378 EDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRLANPVEGLEQLDGAFAPVD 485          
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.710e-35
Identity = 69/111 (62.16%), Postives = 84/111 (75.68%), Query Frame = 1
Query:    1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
            E VL WWK W  +YPLLAR ARVVFGAPAS+AVLE  F + GRM TSSRS+ D+ YV+MI+FLHGNL+LIPEDI +L  + V  A++K P RL+N +  L+ L GAF PVD
Sbjct:  141 EDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKL-TEVV--ARTKFPGRLANPVDGLEPLDGAFAPVD 248          
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 2.100e-34
Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   28 WESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAK-YVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
            W   YPLLAR ARVVFGAPAS+AVLERDF + GRMMTSSR + D+  YV+MILFLHGNLDLIPEDI +L  + V  A+SKIP RL+N +  L+ L GAF PVD
Sbjct:    2 WAHVYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEAV--ARSKIPGRLANPVEGLEQLDGAFAPVD 101          
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 6.410e-31
Identity = 63/112 (56.25%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSK-IPERLSNTLPELQGLAGAFGPVD 333
            E VL WWKRW SSYPLLARA RVVFGAPAS+A                       YV+MILFLHGNLDLIP+DI  LP DG + A +K +P RL N  P+L+ ++GAFGPVD
Sbjct:   35 ESVLKWWKRWMSSYPLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERISGAFGPVD 123          
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 8.880e-29
Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query:   37 SYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKY-VDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
            +Y LL   ARVVFGAPAS+A LERDF + GRMMTSSRS+ D+KY V+MILFLHGNLDLIPEDI  L  + V  A++  P RL+N +  L+ L GAF PVD
Sbjct:    5 AYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEAV--ARTMFPGRLANPVEGLKQLDGAFTPVD 101          
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.000e-26
Identity = 60/111 (54.05%), Postives = 70/111 (63.06%), Query Frame = 1
Query:    1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
            EGVL WW++WE SYPLLARAARV FGAPA+                      DAKYV+M+LFLHG LDL PE I EL  + ++   +KIP RLSN +PEL GL G  GPVD
Sbjct:  344 EGVLKWWEKWEGSYPLLARAARVDFGAPAAG---------------------DAKYVEMVLFLHGKLDLFPEQIPELRDEDIH---AKIPGRLSNPVPELHGLDGTLGPVD 430          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LFP4_ECTSI1.770e-4372.97Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
D8LBK4_ECTSI1.160e-3970.27Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JZ82_9PHAE4.970e-3865.77Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5L5L6_9PHAE6.580e-3772.73Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JNY1_9PHAE3.010e-3665.77Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JML0_9PHAE6.710e-3562.16Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KCJ3_9PHAE2.100e-3466.99Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KGU9_9PHAE6.410e-3156.25Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KW12_9PHAE8.880e-2963.00Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KEK6_9PHAE1.000e-2654.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165671contigH-elongata_contig165671:1074..1406 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size333
Cds size321
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.6245482-CDS-H-elongata_contig165671:1073..13941622929969.6245482-CDS-H-elongata_contig165671:1073..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165671 1074..1394 -
1691679228.596657-CDS-H-elongata_contig165671:1073..13941691679228.596657-CDS-H-elongata_contig165671:1073..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165671 1074..1394 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.6393578-UTR-H-elongata_contig165671:1394..14061622929969.6393578-UTR-H-elongata_contig165671:1394..1406Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165671 1395..1406 -
1691679228.6052659-UTR-H-elongata_contig165671:1394..14061691679228.6052659-UTR-H-elongata_contig165671:1394..1406Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165671 1395..1406 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165671.4137.1prot_H-elongata_contig165671.4137.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165671 1074..1394 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165671.4137.1

>prot_H-elongata_contig165671.4137.1 ID=prot_H-elongata_contig165671.4137.1|Name=mRNA_H-elongata_contig165671.4137.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
MWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDA
KYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLA
GAFGPVD
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mRNA from alignment at H-elongata_contig165671:1074..1406-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165671.4137.1 ID=mRNA_H-elongata_contig165671.4137.1|Name=mRNA_H-elongata_contig165671.4137.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig165671:1074..1406- (Himanthalia elongata Himel1 dioecious)
GAGGGTGTGCTCATGTGGTGGAAGAGATGGGAGAGCTCGTACCCACTCCT GGCCCGGGCAGCTCGTGTGGTGTTCGGAGCTCCAGCGTCGTCGGCGGTGC TCGAGCGCGATTTTAGGGATACTGGGCGCATGATGACGTCATCGAGAAGC TCCACCGATGCCAAGTACGTGGATATGATCCTTTTTCTGCACGGAAACCT GGACCTCATTCCCGAGGACATTGCAGAGCTGCCAGCCGACGGGGTCAACG GTGCGCAAAGCAAGATTCCCGAGCGGTTGTCCAACACCCTGCCGGAGCTG CAAGGGCTAGCCGGTGCATTCGGCCCAGTGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig165671:1074..1406-

>mRNA_H-elongata_contig165671.4137.1 ID=mRNA_H-elongata_contig165671.4137.1|Name=mRNA_H-elongata_contig165671.4137.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig165671:1074..1406- (Himanthalia elongata Himel1 dioecious)
ATGTGGTGGAAGAGATGGGAGAGCTCGTACCCACTCCTGGCCCGGGCAGC
TCGTGTGGTGTTCGGAGCTCCAGCGTCGTCGGCGGTGCTCGAGCGCGATT
TTAGGGATACTGGGCGCATGATGACGTCATCGAGAAGCTCCACCGATGCC
AAGTACGTGGATATGATCCTTTTTCTGCACGGAAACCTGGACCTCATTCC
CGAGGACATTGCAGAGCTGCCAGCCGACGGGGTCAACGGTGCGCAAAGCA
AGATTCCCGAGCGGTTGTCCAACACCCTGCCGGAGCTGCAAGGGCTAGCC
GGTGCATTCGGCCCAGTGGACATGTGGTGGAAGAGATGGGAGAGCTCGTA
CCCACTCCTGGCCCGGGCAGCTCGTGTGGTGTTCGGAGCTCCAGCGTCGT
CGGCGGTGCTCGAGCGCGATTTTAGGGATACTGGGCGCATGATGACGTCA
TCGAGAAGCTCCACCGATGCCAAGTACGTGGATATGATCCTTTTTCTGCA
CGGAAACCTGGACCTCATTCCCGAGGACATTGCAGAGCTGCCAGCCGACG
GGGTCAACGGTGCGCAAAGCAAGATTCCCGAGCGGTTGTCCAACACCCTG
CCGGAGCTGCAAGGGCTAGCCGGTGCATTCGGCCCAGTGGAC
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