mRNA_H-elongata_contig165671.4137.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: D8LFP4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFP4_ECTSI) HSP 1 Score: 160 bits (404), Expect = 1.770e-43 Identity = 81/111 (72.97%), Postives = 88/111 (79.28%), Query Frame = 1
Query: 1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
EGVL WWKR E SYPLLAR ARVVF APAS V ERD GRMMTSSRS+ DAKYV+M+LFLHGN+DL+PE I ELPADGVNG Q+KIP RLSN + EL L G FGPVD
Sbjct: 647 EGVLNWWKRKEHSYPLLARVARVVFAAPASVMVQERDLGSAGRMMTSSRSTGDAKYVEMVLFLHGNVDLLPEIIPELPADGVNGVQTKIPGRLSNPMLELHALDGEFGPVD 757
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: D8LBK4_ECTSI (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK4_ECTSI) HSP 1 Score: 149 bits (375), Expect = 1.160e-39 Identity = 78/111 (70.27%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
EGVL WWK+W YPLLARAARVVFGAPAS+AVLERDF D MM SSRS+ DAKYV+M+LFLHGNLDLIPE I EL + V Q+KIP RLSN +PEL GL G G VD
Sbjct: 545 EGVLEWWKKWGRLYPLLARAARVVFGAPASAAVLERDFTDAWCMMASSRSAGDAKYVEMVLFLHGNLDLIPEQIPELRDEDV---QAKIPGRLSNPIPELHGLDGTLGLVD 652
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5JZ82_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ82_9PHAE) HSP 1 Score: 144 bits (364), Expect = 4.970e-38 Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
E VL WWK W +YPLLAR ARVVFGAPAS+AVLERDF + GRMMTSSRS+ D+KYV+MI+FLHGNLDLIPEDI +L A++KIP RL+N + L+ L G F PVD
Sbjct: 605 EDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRSTMDSKYVEMIMFLHGNLDLIPEDITKLTEAA---ARTKIPGRLANPVERLEQLDGVFAPVD 712
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5L5L6_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L6_9PHAE) HSP 1 Score: 130 bits (327), Expect = 6.580e-37 Identity = 72/99 (72.73%), Postives = 78/99 (78.79%), Query Frame = 1
Query: 1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPE-RLSNTLP 294
+ VL WWKRW SSYPLLARAARVVFGAPAS+AVLE DF D GR+MTSSRS+TDAKYV+MILFLHGNLDLIPEDI PA Q P RL+NT P
Sbjct: 35 DSVLKWWKRWMSSYPLLARAARVVFGAPASAAVLEGDFGDAGRIMTSSRSTTDAKYVEMILFLHGNLDLIPEDI---PA-----CQPTAPSARLTNTCP 125
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5JNY1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY1_9PHAE) HSP 1 Score: 137 bits (346), Expect = 3.010e-36 Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
E VL WWK W +YPLLAR ARVV GA AS+AVLE DF + GRMMTSSRS+ D+KYV+MILFLHGNLDLIPEDI +L + V A++KIP RL+N + L+ L GAF PVD
Sbjct: 378 EDVLKWWKMWAHAYPLLARVARVVIGALASAAVLEHDFSNAGRMMTSSRSTMDSKYVEMILFLHGNLDLIPEDITKL-TEAV--ARTKIPGRLANPVEGLEQLDGAFAPVD 485
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5JML0_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML0_9PHAE) HSP 1 Score: 129 bits (324), Expect = 6.710e-35 Identity = 69/111 (62.16%), Postives = 84/111 (75.68%), Query Frame = 1
Query: 1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
E VL WWK W +YPLLAR ARVVFGAPAS+AVLE F + GRM TSSRS+ D+ YV+MI+FLHGNL+LIPEDI +L + V A++K P RL+N + L+ L GAF PVD
Sbjct: 141 EDVLKWWKMWAHAYPLLARVARVVFGAPASAAVLECYFSNAGRMTTSSRSTMDSTYVEMIMFLHGNLNLIPEDITKL-TEVV--ARTKFPGRLANPVDGLEPLDGAFAPVD 248
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5KCJ3_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCJ3_9PHAE) HSP 1 Score: 123 bits (309), Expect = 2.100e-34 Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = 1
Query: 28 WESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAK-YVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
W YPLLAR ARVVFGAPAS+AVLERDF + GRMMTSSR + D+ YV+MILFLHGNLDLIPEDI +L + V A+SKIP RL+N + L+ L GAF PVD
Sbjct: 2 WAHVYPLLARVARVVFGAPASAAVLERDFSNAGRMMTSSRRTMDSTTYVEMILFLHGNLDLIPEDITKL-TEAV--ARSKIPGRLANPVEGLEQLDGAFAPVD 101
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5KGU9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGU9_9PHAE) HSP 1 Score: 115 bits (289), Expect = 6.410e-31 Identity = 63/112 (56.25%), Postives = 73/112 (65.18%), Query Frame = 1
Query: 1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSK-IPERLSNTLPELQGLAGAFGPVD 333
E VL WWKRW SSYPLLARA RVVFGAPAS+A YV+MILFLHGNLDLIP+DI LP DG + A +K +P RL N P+L+ ++GAFGPVD
Sbjct: 35 ESVLKWWKRWMSSYPLLARATRVVFGAPASAA-----------------------YVEMILFLHGNLDLIPDDIPALPTDGPDSATNKHMPGRLKNPNPKLERISGAFGPVD 123
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5KW12_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW12_9PHAE) HSP 1 Score: 109 bits (272), Expect = 8.880e-29 Identity = 63/100 (63.00%), Postives = 75/100 (75.00%), Query Frame = 1
Query: 37 SYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKY-VDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
+Y LL ARVVFGAPAS+A LERDF + GRMMTSSRS+ D+KY V+MILFLHGNLDLIPEDI L + V A++ P RL+N + L+ L GAF PVD
Sbjct: 5 AYLLLTGVARVVFGAPASAAALERDFSNAGRMMTSSRSAMDSKYYVEMILFLHGNLDLIPEDITTL-TEAV--ARTMFPGRLANPVEGLKQLDGAFTPVD 101
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Match: A0A6H5KEK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK6_9PHAE) HSP 1 Score: 111 bits (278), Expect = 1.000e-26 Identity = 60/111 (54.05%), Postives = 70/111 (63.06%), Query Frame = 1
Query: 1 EGVLMWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAKYVDMILFLHGNLDLIPEDIAELPADGVNGAQSKIPERLSNTLPELQGLAGAFGPVD 333
EGVL WW++WE SYPLLARAARV FGAPA+ DAKYV+M+LFLHG LDL PE I EL + ++ +KIP RLSN +PEL GL G GPVD
Sbjct: 344 EGVLKWWEKWEGSYPLLARAARVDFGAPAAG---------------------DAKYVEMVLFLHGKLDLFPEQIPELRDEDIH---AKIPGRLSNPVPELHGLDGTLGPVD 430 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165671.4137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig165671.4137.1 >prot_H-elongata_contig165671.4137.1 ID=prot_H-elongata_contig165671.4137.1|Name=mRNA_H-elongata_contig165671.4137.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp MWWKRWESSYPLLARAARVVFGAPASSAVLERDFRDTGRMMTSSRSSTDAback to top mRNA from alignment at H-elongata_contig165671:1074..1406- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig165671.4137.1 ID=mRNA_H-elongata_contig165671.4137.1|Name=mRNA_H-elongata_contig165671.4137.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig165671:1074..1406- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig165671:1074..1406- >mRNA_H-elongata_contig165671.4137.1 ID=mRNA_H-elongata_contig165671.4137.1|Name=mRNA_H-elongata_contig165671.4137.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig165671:1074..1406- (Himanthalia elongata Himel1 dioecious)back to top |