mRNA_H-elongata_contig165595.4130.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165595.4130.1
Unique NamemRNA_H-elongata_contig165595.4130.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A6H5JWM7_9PHAE (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM7_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 4.130e-30
Identity = 65/123 (52.85%), Postives = 79/123 (64.23%), Query Frame = 1
Query:   25 QILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGM-----------QGSG---------------EAFSWSIDVHC 315
            Q+LDA++LPFE  SFDLVVDKG VDA++CD  G  NAR+     LEAARV+APGGWLVVVSHV+P+T EG  LLSEVL+P +           +G G               E +SWS+DVHC
Sbjct:  174 QVLDARDLPFEDGSFDLVVDKGAVDAMLCDDAGQDNARK---ICLEAARVVAPGGWLVVVSHVHPSTPEGMVLLSEVLVPALRESSSSLSSAGEGGGREGKEGEYEEAYEYEEVYSWSVDVHC 293          
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: D7G665_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G665_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.900e-29
Identity = 59/122 (48.36%), Postives = 76/122 (62.30%), Query Frame = 1
Query:   25 QILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEA-------------------------FSWSIDVHC 315
            Q+LDA++LPFE  SFDLVVDKG VDA++CD  G  NAR+     LEAARV+APGGW VVVSH++P+T EG +LL E L+P ++ S  +                         +SWS+DVHC
Sbjct:   55 QVLDARDLPFEDGSFDLVVDKGAVDAMLCDDAGQENARE---ICLEAARVVAPGGWFVVVSHIHPSTPEGMALLEEALVPALRESSSSLSAGEGGEREDREGEYEEVYEXXXVYSWSVDVHC 173          
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: D8LLU3_ECTSI (Methyltransf_11 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU3_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 1.160e-28
Identity = 59/122 (48.36%), Postives = 75/122 (61.48%), Query Frame = 1
Query:   25 QILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFS-------------------------WSIDVHC 315
            Q+LDA++LPFE  SFDLVVDKG VDA++CD  G  NAR+     LEAARV+APGGW VVVSH++P+T EG +LL E L+P ++ S  + S                         WS+DVHC
Sbjct:   92 QVLDARDLPFEDGSFDLVVDKGAVDAMLCDDAGQENARE---ICLEAARVVAPGGWFVVVSHIHPSTPEGMALLEEALVPALRESSSSLSAGEGGEREDREGEYEEVYEXXXXXSWSVDVHC 210          
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A1E7FRC1_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FRC1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.720e-16
Identity = 36/98 (36.73%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   25 QILDAKELPFEASSFDLVVDKGTVDALMCD--GTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVH 312
            +++DA++LP+   SF+++++KGT+DA++ D  G G  N R     + E ARVLA GG+++++SH+N   D G   L++V++PG++  G+   + ++VH
Sbjct:  216 EVVDARQLPYGDESFEMILEKGTLDAMLSDEDGNGPKNCRM---IVSECARVLAIGGYIIIISHLNARVDSGIQWLNDVVVPGLREGGKNCDFQVEVH 310          
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A7S4ER94_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ER94_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.120e-15
Identity = 33/96 (34.38%), Postives = 65/96 (67.71%), Query Frame = 1
Query:   25 QILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVH 312
            ++ DA++L +E  SF+++++KGT+DA++ D  G       R  + E ARVL  GG+++++SH+N   + G   L++V++PG++ +G+ + W ++VH
Sbjct:  309 EVADARQLSYENESFEMILEKGTLDAMLSDSDG-GGQENCRKIVSECARVLKVGGYIIIISHLNARVESGLQWLNDVIVPGVRAAGK-YQWLVEVH 402          
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A448ZBT7_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZBT7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.810e-14
Identity = 32/96 (33.33%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   25 QILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVH 312
            ++ DA++L +   SF+++++KGT+DA++ D  G       R  + E ARVL   G+++++SH+N   + G   L+ V++PG++ +G+ F W ++VH
Sbjct:  279 EVADARQLSYPDGSFEMILEKGTLDAMLSDSEG-GGQENCRXIVAECARVLKVSGYIIIISHLNARVESGLQWLNNVIVPGLRAAGD-FHWLVEVH 372          
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A1Z5KEM9_FISSO (Methyltransf_11 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KEM9_FISSO)

HSP 1 Score: 73.2 bits (178), Expect = 1.050e-12
Identity = 42/107 (39.25%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   25 QILDAKELPFEASSFDLVVDKGTVDALMCDG-TGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVHCRGEDDAEEG 342
            Q +DA+++P+   SF LV++KGT+DA++ D   G+AN ++    + E+ARVL  GG +V+VSH+N     G   + +V+  G++ S E  SW+I+VH     DA+ G
Sbjct:  278 QKVDARDMPYSDESFHLVLEKGTLDAMLSDREAGSANCQK---IIRESARVLKTGGIIVLVSHLNAFDTSGIDWMEDVVFGGLR-SLETSSWAIEVHGNDGGDAQPG 380          
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: B7FYD0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FYD0_PHATC)

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-12
Identity = 37/102 (36.27%), Postives = 62/102 (60.78%), Query Frame = 1
Query:   34 DAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVHCRGEDDAEE 339
            DA+ LP+E  +F+LV++KGT+DA++ D       R     + E+ RVL  GG++V++SH+N  T +G   L +V+  G++ +    +W I+VH   E  AE+
Sbjct:  285 DARNLPYEDGTFELVLEKGTLDAMLSDKD--EGVRNCISIVKESGRVLKVGGYIVLISHLNAHTSKGLGWLQDVVFEGLKRADTEATWEIEVHGNDEAVAED 384          
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A1Z5KDZ3_FISSO (Methyltransf_11 domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDZ3_FISSO)

HSP 1 Score: 72.0 bits (175), Expect = 2.680e-12
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 1
Query:   31 LDAKELPFEASSFDLVVDKGTVDALMCDG-TGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWSIDVHCRGEDDAEEG 342
            +DA+  PF   SF LV++KGT+DA++ D   G+AN ++    + E+ARVL  GG +V+VSH+N     G   + +V+  G++ S E  SW+I+VH     DA+ G
Sbjct:  275 VDARNTPFSDESFHLVLEKGTLDAMLSDREAGSANCQK---IIRESARVLKTGGIIVLVSHLNAFDTSGIDWMEDVVFGGLR-SFETSSWAIEVHGNDGGDAQPG 375          
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Match: A0A7R9WWQ1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWQ1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 5.160e-12
Identity = 35/98 (35.71%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   64 SFDLVVDKGTVDALMCDGTGTANARQARGFLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQ------GSGEAFSWSIDVHCRGEDDAEE 339
            +FDL+++KGT+DA++ + +  A  +  R  + E +R+L PGG ++VVSH+N    +G   L  V+LPG++       +    S+ I+VH  G D+A E
Sbjct:   33 TFDLILEKGTLDAMLSNDSEDAGVQNCREIMAECSRLLKPGGVMLVVSHLNAHVQKGLDWLERVVLPGLRRKIGKNATESTGSFEIEVHGNGPDEASE 130          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165595.4130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWM7_9PHAE4.130e-3052.85Methyltransf_11 domain-containing protein n=1 Tax=... [more]
D7G665_ECTSI1.900e-2948.36Methyltransf_11 domain-containing protein n=1 Tax=... [more]
D8LLU3_ECTSI1.160e-2848.36Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A1E7FRC1_9STRA5.720e-1636.73Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A7S4ER94_9STRA4.120e-1534.38Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A448ZBT7_9STRA4.810e-1433.33Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A1Z5KEM9_FISSO1.050e-1239.25Methyltransf_11 domain-containing protein n=1 Tax=... [more]
B7FYD0_PHATC1.100e-1236.27Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A1Z5KDZ3_FISSO2.680e-1240.00Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A7R9WWQ1_9STRA5.160e-1235.71Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165595contigH-elongata_contig165595:96..898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue9.9e-24
Seed eggNOG ortholog2880.D8LLU3
EggNOG free text desc.methyltransferase activity
EggNOG OGsKOG2352@1,KOG2352@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size366
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929969.0468175-CDS-H-elongata_contig165595:95..3031622929969.0468175-CDS-H-elongata_contig165595:95..303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165595 96..303 -
1691679228.3078437-CDS-H-elongata_contig165595:95..3031691679228.3078437-CDS-H-elongata_contig165595:95..303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165595 96..303 -
1622929969.0670662-CDS-H-elongata_contig165595:740..8981622929969.0670662-CDS-H-elongata_contig165595:740..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165595 741..898 -
1691679228.3185883-CDS-H-elongata_contig165595:740..8981691679228.3185883-CDS-H-elongata_contig165595:740..898Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165595 741..898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165595.4130.1prot_H-elongata_contig165595.4130.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165595 96..898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165595.4130.1

>prot_H-elongata_contig165595.4130.1 ID=prot_H-elongata_contig165595.4130.1|Name=mRNA_H-elongata_contig165595.4130.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=122bp
MHRLRRASQILDAKELPFEASSFDLVVDKGTVDALMCDGTGTANARQARG
FLLEAARVLAPGGWLVVVSHVNPATDEGASLLSEVLLPGMQGSGEAFSWS
IDVHCRGEDDAEEGDGPHGQDG
back to top

mRNA from alignment at H-elongata_contig165595:96..898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165595.4130.1 ID=mRNA_H-elongata_contig165595.4130.1|Name=mRNA_H-elongata_contig165595.4130.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=803bp|location=Sequence derived from alignment at H-elongata_contig165595:96..898- (Himanthalia elongata Himel1 dioecious)
ATGCACCGCTTACGCCGCGCATCACAGATTCTTGACGCAAAAGAGCTCCC CTTCGAGGCAAGCTCGTTCGACCTCGTGGTGGACAAGGGCACAGTCGATG CTCTTATGTGCGACGGAACTGGCACCGCCAATGCGAGGCAAGCTCGGGGC TTTCTGCTGTCAGATAAACGGGGGTTTCAGAATGTTCAGCCAAGTTATCT TGCGAGCGCGCCCTCGAAGTCGTGGCAAGGGAAATGATAAATCTCTCGTG CGCAAATATTTGTACACGAGCGAGCGCCACGCCATAGTTTTCCGGGCGTT TTTTGTTTGGTGTTAATTTTTTGCCTTCGTTTCAGCGCCGCGGTTTGGAA GAGAGAGAGAAATAGAGAGAGAGCAAGATGAGGTATTGTGTCTTCCCCTG TGTCTTGCGGCTAAACGCCACACCTCATGATATTATGTATTTTTTTTATC GAAGCGCCCGGCTGCGGCGACGAAGCAAGACCAGCGCTAACCCTCCCTCC CTCCCTCCCTTCTTCCCACATTTGCGACCTCCGCGATTGATGATACCGCG GCAAAAATGGGGGCCTCGGCGATCCGATCCCAGGGCGACGTGCAGCGAGG CGGCGCGAGTACTGGCGCCGGGGGGATGGCTCGTGGTGGTTTCGCACGTG AACCCGGCAACGGACGAGGGTGCCTCGCTACTGTCGGAGGTTTTGCTGCC CGGGATGCAGGGATCCGGGGAGGCGTTCTCGTGGTCGATCGATGTGCACT GCCGCGGAGAGGATGACGCCGAAGAAGGGGACGGTCCTCATGGGCAAGAT GGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig165595:96..898-

>mRNA_H-elongata_contig165595.4130.1 ID=mRNA_H-elongata_contig165595.4130.1|Name=mRNA_H-elongata_contig165595.4130.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=732bp|location=Sequence derived from alignment at H-elongata_contig165595:96..898- (Himanthalia elongata Himel1 dioecious)
ATGCACCGCTTACGCCGCGCATCACAGATTCTTGACGCAAAAGAGCTCCC
CTTCGAGGCAAGCTCGTTCGACCTCGTGGTGGACAAGGGCACAGTCGATG
CTCTTATGTGCGACGGAACTGGCACCGCCAATGCGAGGCAAGCTCGGGGC
TTTCTGCTATGCACCGCTTACGCCGCGCATCACAGATTCTTGACGCAAAA
GAGCTCCCCTTCGAGGCAAGCTCGTTCGACCTCGTGGTGGACAAGGGCAC
AGTCGATGCTCTTATGTGCGACGGAACTGGCACCGCCAATGCGAGGCAAG
CTCGGGGCTTTCTGCTCGAGGCGGCGCGAGTACTGGCGCCGGGGGGATGG
CTCGTGGTGGTTTCGCACGTGAACCCGGCAACGGACGAGGGTGCCTCGCT
ACTGTCGGAGGTTTTGCTGCCCGGGATGCAGGGATCCGGGGAGGCGTTCT
CGTGGTCGATCGATGTGCACTGCCGCGGAGAGGATGACGCCGAAGAAGGG
GACGGTCCTCATGGGCAAGATGGACGAGGCGGCGCGAGTACTGGCGCCGG
GGGGATGGCTCGTGGTGGTTTCGCACGTGAACCCGGCAACGGACGAGGGT
GCCTCGCTACTGTCGGAGGTTTTGCTGCCCGGGATGCAGGGATCCGGGGA
GGCGTTCTCGTGGTCGATCGATGTGCACTGCCGCGGAGAGGATGACGCCG
AAGAAGGGGACGGTCCTCATGGGCAAGATGGA
back to top