mRNA_H-elongata_contig165561.4128.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165561.4128.1
Unique NamemRNA_H-elongata_contig165561.4128.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig165561.4128.1 vs. uniprot
Match: D7G7T3_ECTSI (GDSL-lilke lipase/acylhydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7T3_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.330e-39
Identity = 65/93 (69.89%), Postives = 76/93 (81.72%), Query Frame = 1 
Query:   19 LKVALIGDSVLDDHFWLDRPAEDVRTQVDKSLRHAYPSRNIEVLKFAVDESTVSCVLRGRVPAGIYRRGRKKANMEPYPMDEDGVVRPLSLLR 297
            L VAL+GDSVLDDH+WLD P  DVR Q +++L+ AYP R+I V  FAVDEST+SCVLRGR PA  YR GR+KA MEPYP++EDGVVRPL LLR
Sbjct:    6 LNVALVGDSVLDDHYWLDHPPNDVRAQTERTLKIAYPDRSIRVDNFAVDESTISCVLRGRAPAAHYRNGRRKAKMEPYPVEEDGVVRPLKLLR 98
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BLAST of mRNA_H-elongata_contig165561.4128.1 vs. uniprot
Match: A0A7S2TYU9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TYU9_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 6.240e-15
Identity = 42/91 (46.15%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:   25 VALIGDSVLDDHFWLDRPAEDVRTQVDKSLRHAYPSRNIEVLKFAVDESTVSCVLRGRVPAGIYRRGRKKANMEPYPMDEDGVVRPLSLLR 297
            V L+GDSVLD  +WL    +DVR ++++ L+    +++ +   +AVDES +  VL G  P   Y R R+   MEPYPMD+ GVVRPL LLR
Sbjct:   22 VVLMGDSVLDTFYWLRDKKKDVRYEMERLLKE--DNKDSKCTNYAVDESQIDHVLVGICPNPGYVRSRRWNKMEPYPMDQRGVVRPLVLLR 110
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BLAST of mRNA_H-elongata_contig165561.4128.1 vs. uniprot
Match: X6P0L7_RETFI (Uncharacterized protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6P0L7_RETFI)

HSP 1 Score: 74.7 bits (182), Expect = 8.590e-15
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:   16 YLKVALIGDSVLDDHFWLDRPAEDVRTQVDKSLRHAYPSRNIEVLKFAVDESTVSCVLRGRVPAGIYRRGRKKANMEPYPMDEDGVVRPLSLLR 297
            Y  + L+GDSVLD+ FWLD  + D+   +DK+          ++L  AVDEST+  VL+GR PA  Y  GRK+  ++ YP    G V PL  ++
Sbjct:   34 YPLLVLMGDSVLDNFFWLDDKSTDLEKVLDKTFEE-----KADILNLAVDESTIKSVLKGRKPAIQYVNGRKENKLKAYPTQSSGKVEPLKNIK 122
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BLAST of mRNA_H-elongata_contig165561.4128.1 vs. uniprot
Match: A0A1Q9EC56_SYMMI (Uncharacterized protein n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9EC56_SYMMI)

HSP 1 Score: 53.1 bits (126), Expect = 5.520e-6
Identity = 30/98 (30.61%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:   34 IGDSVLDDHFWLDRPAEDVRTQVDKSLRHAYPS--RNIEVLKFAVDESTVSCVLRGRVPAG---IYRRGRKKANMEP-----YPMDEDGVVRPLSLLR 297
            +GDSVLD+ FWL+ P+  +R Q+ ++L  +  +  R ++V+  AVD+ T          A    +Y + R+K + E      Y +D+DG++R +  L+
Sbjct:    1 MGDSVLDNFFWLETPSRPLRVQLQETLGKSRDAKVRQLQVVNLAVDQMTTFDFEERSASANPWDVYAQAREKVDFEAEEDKKYMVDQDGIIRSVKNLK 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165561.4128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G7T3_ECTSI1.330e-3969.89GDSL-lilke lipase/acylhydrolase family protein n=2... [more]
A0A7S2TYU9_9EUKA6.240e-1546.15Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
X6P0L7_RETFI8.590e-1540.43Uncharacterized protein (Fragment) n=1 Tax=Reticul... [more]
A0A1Q9EC56_SYMMI5.520e-630.61Uncharacterized protein n=3 Tax=Symbiodinium TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165561contigH-elongata_contig165561:268..564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.0
Seed ortholog evalue3.1e-31
Seed eggNOG ortholog2880.D7G7T3
EggNOG OGs2CBI1@1,2SQ5S@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929968.9306455-CDS-H-elongata_contig165561:267..5641622929968.9306455-CDS-H-elongata_contig165561:267..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165561 268..564 -
1691679228.2825487-CDS-H-elongata_contig165561:267..5641691679228.2825487-CDS-H-elongata_contig165561:267..564Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165561 268..564 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165561.4128.1prot_H-elongata_contig165561.4128.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165561 268..564 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165561.4128.1

>prot_H-elongata_contig165561.4128.1 ID=prot_H-elongata_contig165561.4128.1|Name=mRNA_H-elongata_contig165561.4128.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
MASSTYLKVALIGDSVLDDHFWLDRPAEDVRTQVDKSLRHAYPSRNIEVL
KFAVDESTVSCVLRGRVPAGIYRRGRKKANMEPYPMDEDGVVRPLSLLR
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mRNA from alignment at H-elongata_contig165561:268..564-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165561.4128.1 ID=mRNA_H-elongata_contig165561.4128.1|Name=mRNA_H-elongata_contig165561.4128.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=297bp|location=Sequence derived from alignment at H-elongata_contig165561:268..564- (Himanthalia elongata Himel1 dioecious)
ATGGCTTCTTCCACATACCTCAAGGTGGCGCTCATCGGAGATAGCGTCCT
TGACGATCACTTTTGGCTCGATCGACCAGCGGAAGACGTTAGGACGCAAG
TGGATAAATCTTTGAGACACGCCTACCCGTCCCGAAACATTGAGGTGCTG
AAATTCGCCGTAGATGAGTCTACAGTATCATGTGTCCTCCGTGGTCGAGT
TCCGGCAGGTATTTACCGACGTGGGCGCAAGAAGGCGAACATGGAGCCTT
ACCCCATGGACGAAGATGGTGTGGTAAGACCACTGTCCCTGCTTCGG
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Coding sequence (CDS) from alignment at H-elongata_contig165561:268..564-

>mRNA_H-elongata_contig165561.4128.1 ID=mRNA_H-elongata_contig165561.4128.1|Name=mRNA_H-elongata_contig165561.4128.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig165561:268..564- (Himanthalia elongata Himel1 dioecious)
ATGGCTTCTTCCACATACCTCAAGGTGGCGCTCATCGGAGATAGCGTCCT
TGACGATCACTTTTGGCTCGATCGACCAGCGGAAGACGTTAGGACGCAAG
TGGATAAATCTTTGAGACACGCCTACCCGTCCCGAAACATTGAGGTGCTG
AAATTCGCCGTAGATGAGTCTACAGTATCATGTGTCCTCCGTGGTCGAGT
TCCGGCAGGTATTTACCGACGTGGGCGCAAGAAGGCGAACATGGAGCCTT
ACCCCATGGACGAAGATGGTGTGGTAAGACCACTGTCCCTGCTTCGGATG
GCTTCTTCCACATACCTCAAGGTGGCGCTCATCGGAGATAGCGTCCTTGA
CGATCACTTTTGGCTCGATCGACCAGCGGAAGACGTTAGGACGCAAGTGG
ATAAATCTTTGAGACACGCCTACCCGTCCCGAAACATTGAGGTGCTGAAA
TTCGCCGTAGATGAGTCTACAGTATCATGTGTCCTCCGTGGTCGAGTTCC
GGCAGGTATTTACCGACGTGGGCGCAAGAAGGCGAACATGGAGCCTTACC
CCATGGACGAAGATGGTGTGGTAAGACCACTGTCCCTGCTTCGG
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