mRNA_H-elongata_contig16546.4122.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16546.4122.1
Unique NamemRNA_H-elongata_contig16546.4122.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16546.4122.1 vs. uniprot
Match: A0A6H5K108_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K108_9PHAE)

HSP 1 Score: 442 bits (1136), Expect = 7.450e-143
Identity = 278/591 (47.04%), Postives = 350/591 (59.22%), Query Frame = 2 
Query:  554 TPKAASERTG----AIKDNDITLEAMEAWLDEAGVDRRG------STRLRRFAGRGIGLEASRELERDSTVASIPLRSCFSSDPVDSPHGTLRALAHVVLEGLSTTATVIHPASSVTEVALDKDVMSVTLQVLLECMAGACSEFAPWMAMLPRGGDLNLPALWRDDDLRGLEGTLVSREVRQCLTTAETERRHVEALIVSVVGRQVGDNG-EGRGGALLREVLATGDGTLAGRPTLVEWLNARCIVQSRAYRVGERYILIPLVDFANHDDNVAFSVCPGDGVFTELDEVVLVADRNYQPGQEVCASYGSRMDNAKRLYSFGFVSLSEPCCS-----LLGDKIRLPNEAFCDVDVPVDPSDPLCTFKEGVLRRLLHAED-GAARVEAVFPLQPCCPYVRQLVDGPAMSYLHVLLPLFRFVALTSHECLSNGIVVDVSGAKDGSSDIGVVSGEITINNSRGTIDHSDRLAQEGAAFPGAWWSPYLVSNEDHTVFAHVRRFVSWDNERLALRLLSEHCVNRLNAIGLRPSDLEALREAANHGGAEKLNTA-EPRGLLIAAARVGEAVAWHALLGAVNDSVE------KDQTWVS 2254
            T  AA+E T     + + +  +L+ ME WLDE GVDRRG      + RL   +G+GIGL A+ ELERDSTVASIP + CFSSD  D+P GTLRA AH +   + ++A     A S   ++ ++DV  VTLQV LE  AGA S  APWMAML R G LNLPALW D DL GL+GTLV ++V  CL  A++ER  V + +V+ +    G  G EG       E        + GRPT  EWL+ARC VQSRAYRVG RY+LIPLVDFANHDD+VAF+VCPGDGVFT  DEVV VADR Y+PG+EVC +YG  MDNAKRL+SFGFV+L +         L G+ + LP EAFCDV++ +  +D L   KE V R     +D  +  + AVFPL P   +V QLVDGPA  ++  +LP+ R VALT  E        D   A D  S +G      TI  S  T   SDR              P L + +   V AH+   +S  NE+ ALRLL+E C  RL ++ L  SD+EAL   A+     K   A  PR LL A  RVGEA+AW+ALL A ++ +E      ++QTW S
Sbjct:   47 TNVAAAEETNGRCESPRSSKSSLKEMELWLDEIGVDRRGGGCGPPAARLTWVSGKGIGLTAAVELERDSTVASIPRKICFSSDAADAPAGTLRAWAHDLFASIPSSAAA---ACSEKHLSFERDVAVVTLQVFLERAAGASSTCAPWMAMLNRKGHLNLPALWPDSDLEGLKGTLVLQDVEACLARAKSERVAVASAMVTGLRGDFGAGGREGGEAGGFPECTWLDPSNMEGRPTFAEWLHARCTVQSRAYRVGRRYLLIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVFVADRTYRPGEEVCTTYGD-MDNAKRLFSFGFVTLKQHAAQPFQRRLTGNMLALPTEAFCDVELTIAATDALRVVKETVFRERRAGDDLSSPSLSAVFPLTP---FVSQLVDGPARLFVESVLPVLRLVALTPDELTGGEAFGD---AFDTRSALG------TIFESMVTDTSSDRC-------------PVLAAGKGRQVLAHLGSRLSLQNEQQALRLLAEQCRTRLGSLNLTTSDVEALSAVADDSHESKAFAACGPRSLLCATVRVGEAIAWYALLKACDEKMEGCTGVREEQTWAS 608
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BLAST of mRNA_H-elongata_contig16546.4122.1 vs. uniprot
Match: D7G231_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G231_ECTSI)

HSP 1 Score: 435 bits (1118), Expect = 3.630e-140
Identity = 283/632 (44.78%), Postives = 359/632 (56.80%), Query Frame = 2 
Query:  437 RYLLFT-VPIVMAMRPMAVT-LPRSGWSITLRHERMKYCNITPKAASERTG----AIKDNDITLEAMEAWLDEAGVDRRG------STRLRRFAGRGIGLEASRELERDSTVASIPLRSCFSSDPVDSPHGTLRALAHVVLEGLSTTATVIHPASSVTEVALDKDVMSVTLQVLLECMAGACSEFAPWMAMLPRGGDLNLPALWRDDDLRGLEGTLVSREVRQCLTTAETERRHVEALIVSVVGRQVGDNGEGRG-GALLREVLATGDGTLAGRPTLVEWLNARCIVQSRAYRVGERYILIPLVDFANHDDNVAFSVCPGDGVFTELDEVVLVADRNYQPGQEVCASYGSRMDNAKRLYSFGFVSLSEPCCSL-----LGDKIRLPNEAFCDVDVPVDPSDPLCTFKEGVLRRLLHAEDGAA-RVEAVFPLQPCCPYVRQLVDGPAMSYLHVLLPLFRFVALTSHECLSNGIVVDVSGAKDGSSDIGVVSGEITINNSRGTIDHSDRLAQEGAAFPGAWWSPYLVSNEDHTVFAHVRRFVSWDNERLALRLLSEHCVNRLNAIGLRPSDLEALREAANHGGAEKLNTA-EPRGLLIAAARVGEAVAWHALLGAVNDSVE------KDQTWVS 2254
            R+LL+  V +V+   P   T L R  W  +    R      T  A +E T     + + +  +L+ +E WLDE GVDRRG      + RL   +G+GIGL AS ELERDSTVASIP R CFSSD  D+P GTLRA AH +   + ++A     A S   ++ + DV  VTLQV LE  AG  S  APWMAML R G LNLPALW D DL GL+GTLV ++V  CL  A++ER  V A +V  +  ++G  G   G G    E        + GRPT  EWL+ARC VQSRAYRV  RY+LIPLVDFANHDD+VAF+VCPGDGVFT  DEVV VADR Y+PG+EVC +YG  MDNAKRL+SFGFV+L +           G+ + LP EAFCDV++ +  +D L  FKE VLR     ED  +  + A+FPL P   +V QLV+GPA  ++  +LP+ R VALT  E        D    +        V G  T  +SR T   SD+              P L +     V AH+   +S  NE+ ALRLL+E C  RL ++     D+E LR  A+     K   A  PR LL A  RVGEA+AW+ALL A  + +E      ++QTW S
Sbjct:    6 RWLLYCRVALVLLQLPSPATALVRYSWCRSALLAREGAIGCTNVATAEETDGRCESPRSSKSSLKEIELWLDEVGVDRRGGGCGPPAARLTSVSGKGIGLTASVELERDSTVASIPRRICFSSDAADAPAGTLRAWAHDLFASIPSSAAA---ACSEKHLSFEGDVAVVTLQVFLESAAGERSTCAPWMAMLNRKGSLNLPALWPDSDLEGLKGTLVLQDVEACLARAKSERVAVAAAMVKGLRGELGGGGRAGGEGGGFPECPWLDTSNMEGRPTFAEWLHARCTVQSRAYRVRRRYLLIPLVDFANHDDDVAFAVCPGDGVFTGSDEVVFVADRTYRPGEEVCTTYGD-MDNAKRLFSFGFVTLKQHAAQPSQRRPAGNMLPLPTEAFCDVELTIAATDELRVFKEAVLRERQAGEDLVSPNLGAMFPLTP---FVSQLVEGPARLFVESVLPVMRLVALTPEELTGGDAFGDACDTRS-------VFG--TSFDSRMTDTSSDKC-------------PVLAAGTGRQVLAHLGSRLSLQNEQQALRLLAEQCRTRLGSLNPTFGDVETLRAVADDSHESKTFAACGPRSLLCATVRVGEAIAWYALLKACAEKMEGGTGVREEQTWAS 608
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BLAST of mRNA_H-elongata_contig16546.4122.1 vs. uniprot
Match: D7G230_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G230_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 8.910e-39
Identity = 69/91 (75.82%), Postives = 79/91 (86.81%), Query Frame = 3 
Query:    3 AEARFLLVQDAWEHLRDIDLRQDYDSRLDLQGRNVVVSEEVNLTEMAFDESDGGTFSHDCRCGDAYVVTADELREGFEVLDCGGCSLYIRV 275
            A  RFLL+Q AWE LRD DLRQ+YD RLDLQ RN+VVS+EVN+ +M FDE+DGG+FSH+CRCG+AYVVT DEL EGFEVLDC GCSLYIRV
Sbjct:   46 ASQRFLLIQAAWETLRDEDLRQEYDCRLDLQARNIVVSDEVNVDDMHFDEADGGSFSHECRCGEAYVVTRDELNEGFEVLDCPGCSLYIRV 136
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BLAST of mRNA_H-elongata_contig16546.4122.1 vs. uniprot
Match: A0A836CL58_9STRA (Heat shock protein 40 like protein/ DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL58_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.250e-20
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 3 
Query:   15 FLLVQDAWEHLRDIDLRQDYDSRLDLQGRNVVVSEEVNLTEMAFDESDGGTFSHDCRCGDAYVVTADELREGFEVLDCGGCSLYIRV 275
            F  VQ+AWE LRD + R DYD RL+   ++  +SE+VN ++M   E   G   H CRCG+AY VT DELREG  V+ C GCSL +RV
Sbjct:   51 FRAVQEAWETLRDPERRADYDERLEAASKHATISEDVNASDMQLCED--GVLMHPCRCGEAYEVTQDELREGLNVVPCSGCSLNVRV 135
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BLAST of mRNA_H-elongata_contig16546.4122.1 vs. uniprot
Match: A0A3M6VA91_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VA91_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 7.540e-16
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3 
Query:    6 EARFLLVQDAWEHLRDIDLRQDYDSRLDL-------QGRNVVVSEEVNLTEMAFD----ESDGGTFSHDCRCGDAYVVTADELREGFEVLDCGGCSLYIRV 275
            E +FL VQ A+E LR+ +LRQ YD +L         +   VVVS+EV+L +M  +    E D   ++H CRCGD Y +T DEL +G +V+ C GCSL+IRV
Sbjct:   53 EQQFLSVQAAYETLRNAELRQQYDDKLQQDKLVRKREQEVVVVSDEVSLADMQREVLQAEDDEVIYTHQCRCGDLYEITEDELHDGVDVVSCIGCSLHIRV 153
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BLAST of mRNA_H-elongata_contig16546.4122.1 vs. uniprot
Match: A0A225W9C9_9STRA (Heat shock protein 40 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W9C9_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.860e-15
Identity = 46/111 (41.44%), Postives = 68/111 (61.26%), Query Frame = 3 
Query:    6 EARFLLVQDAWEHLRDIDLRQDYDSRL-------DLQGRNVVVSEEVNLTEMAFD-------ESDGGTFSHDCRCGDAYVVTADELREGFEVLDCGGCSLYIRVRTTPGGK 296
            E +FL VQ+A+E LR  +LR+ YD+++         +   VV+S+EV+L EM  +       + D   F+H CRCGD Y +T +EL++G +V+ C GCSL+IRV   PG K
Sbjct:   49 EQQFLRVQEAYETLRSAELRRQYDAKILHDELVHKREQEVVVISDEVSLDEMQREVLQGEDGDEDEVIFTHQCRCGDMYEITKEELKDGVDVVPCTGCSLHIRV--LPGSK 157
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BLAST of mRNA_H-elongata_contig16546.4122.1 vs. uniprot
Match: H3H5A6_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H5A6_PHYRM)

HSP 1 Score: 84.0 bits (206), Expect = 2.950e-15
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 3 
Query:    6 EARFLLVQDAWEHLRDIDLRQDYDSRL---DLQGRN----VVVSEEVNLTEMAF-----DESDGGTFSHDCRCGDAYVVTADELREGFEVLDCGGCSLYIRV 275
            E RFL VQ+A+E LR  + R+ YD++L   +L  R     V+VS+EV L +M       D+ D   F+H CRCGD Y +T DEL++G +V+ C GCSL+IRV
Sbjct:   45 EQRFLRVQEAYETLRTEEQRRQYDAKLLQDELVRRREQELVMVSDEVPLADMKREILPGDDDDEVLFTHQCRCGDLYEITEDELQDGVDVVPCTGCSLHIRV 146
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BLAST of mRNA_H-elongata_contig16546.4122.1 vs. uniprot
Match: A0A6A3K4X2_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3K4X2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.570e-15
Identity = 44/104 (42.31%), Postives = 65/104 (62.50%), Query Frame = 3 
Query:    6 EARFLLVQDAWEHLRDIDLRQDYDSRLDL-------QGRNVVVSEEVNLTEMAFD-------ESDGGTFSHDCRCGDAYVVTADELREGFEVLDCGGCSLYIRV 275
            E +FL VQ+A+E LR+ +LR+ YD++L         +   VVVS++V L +M  +       + D   F+H CRCGD Y +T DEL++G +V+ C GCSL+IRV
Sbjct:   46 EQQFLRVQEAYETLRNAELRRQYDAKLQQSELVRKREQEVVVVSDDVPLADMQREVLPGEGSDEDEVFFTHQCRCGDVYEITEDELQDGVDVVPCTGCSLHIRV 149
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BLAST of mRNA_H-elongata_contig16546.4122.1 vs. uniprot
Match: A0A2P4YPH2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YPH2_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.060e-15
Identity = 45/104 (43.27%), Postives = 68/104 (65.38%), Query Frame = 3 
Query:    6 EARFLLVQDAWEHLRDIDLRQDYDSRL---DLQGRN----VVVSEEVNLTEMAFD-------ESDGGTFSHDCRCGDAYVVTADELREGFEVLDCGGCSLYIRV 275
            E +FL VQ+A+E LR  +LR+ YD++L   +L  +     VVVS+EV L++M  +       + D   F+H CRCGD Y +T++EL++G +V+ C GCSL+IRV
Sbjct:   53 EQQFLRVQEAYETLRSSELRRQYDAKLLQDELMRKREQEVVVVSDEVPLSDMLREVLQGEDGDEDEVIFTHQCRCGDLYEITSEELQDGVDVVPCTGCSLHIRV 156
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BLAST of mRNA_H-elongata_contig16546.4122.1 vs. uniprot
Match: G4YGH6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YGH6_PHYSP)

HSP 1 Score: 82.8 bits (203), Expect = 8.060e-15
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 3 
Query:    6 EARFLLVQDAWEHLRDIDLRQDYDSRLDL-------QGRNVVVSEEVNLTEMAFD-------ESDGGTFSHDCRCGDAYVVTADELREGFEVLDCGGCSLYIRV 275
            E +FL VQ+A+E LR  +LR+ YD++L         +   VVVS+EV L +M  +       + D   F+H CRCGD Y +T +EL++G +V+ C GCSL+IRV
Sbjct:   47 EQQFLRVQEAYETLRSAELRRQYDAKLQQDELVRKREEEVVVVSDEVPLADMQREVLPGEGGDEDEVLFTHQCRCGDLYEITEEELQDGVDVVPCTGCSLHIRV 150
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16546.4122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K108_9PHAE7.450e-14347.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G231_ECTSI3.630e-14044.78SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G230_ECTSI8.910e-3975.82Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A836CL58_9STRA5.250e-2051.72Heat shock protein 40 like protein/ DnaJ domain-co... [more]
A0A3M6VA91_9STRA7.540e-1645.54Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A225W9C9_9STRA1.860e-1541.44Heat shock protein 40 n=1 Tax=Phytophthora megakar... [more]
H3H5A6_PHYRM2.950e-1546.08Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3K4X2_9STRA4.570e-1542.31Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2P4YPH2_9STRA5.060e-1543.27Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
G4YGH6_PHYSP8.060e-1542.31Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16546contigH-elongata_contig16546:1184..7169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score434.5
Seed ortholog evalue8.3e-119
Seed eggNOG ortholog2880.D7G231
EggNOG OGs2D17T@1,2SH13@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionSET domain and Rubisco LSMT substrate-binding domain protein
Ec32 orthologEc-11_003630.1
Exons5
Model size2257
Cds size1848
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16546.4122.1prot_H-elongata_contig16546.4122.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16546 3579..7169 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929968.2804875-UTR-H-elongata_contig16546:1183..13051622929968.2804875-UTR-H-elongata_contig16546:1183..1305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16546 1184..1305 +
1691679228.025901-UTR-H-elongata_contig16546:1183..13051691679228.025901-UTR-H-elongata_contig16546:1183..1305Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16546 1184..1305 +
1622929968.296966-UTR-H-elongata_contig16546:3291..35781622929968.296966-UTR-H-elongata_contig16546:3291..3578Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16546 3292..3578 +
1691679228.0373814-UTR-H-elongata_contig16546:3291..35781691679228.0373814-UTR-H-elongata_contig16546:3291..3578Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16546 3292..3578 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929968.320224-CDS-H-elongata_contig16546:3578..39021622929968.320224-CDS-H-elongata_contig16546:3578..3902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16546 3579..3902 +
1691679228.046804-CDS-H-elongata_contig16546:3578..39021691679228.046804-CDS-H-elongata_contig16546:3578..3902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16546 3579..3902 +
1622929968.3383985-CDS-H-elongata_contig16546:4793..53471622929968.3383985-CDS-H-elongata_contig16546:4793..5347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16546 4794..5347 +
1691679228.0613313-CDS-H-elongata_contig16546:4793..53471691679228.0613313-CDS-H-elongata_contig16546:4793..5347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16546 4794..5347 +
1622929968.3584883-CDS-H-elongata_contig16546:5933..60301622929968.3584883-CDS-H-elongata_contig16546:5933..6030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16546 5934..6030 +
1691679228.0700235-CDS-H-elongata_contig16546:5933..60301691679228.0700235-CDS-H-elongata_contig16546:5933..6030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16546 5934..6030 +
1622929968.3811538-CDS-H-elongata_contig16546:6296..71691622929968.3811538-CDS-H-elongata_contig16546:6296..7169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16546 6297..7169 +
1691679228.0784798-CDS-H-elongata_contig16546:6296..71691691679228.0784798-CDS-H-elongata_contig16546:6296..7169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16546 6297..7169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16546.4122.1

>prot_H-elongata_contig16546.4122.1 ID=prot_H-elongata_contig16546.4122.1|Name=mRNA_H-elongata_contig16546.4122.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=616bp
MRPIRLYLGRYLLFTVPIVMAMRPMAVTLPRSGWSITLRHERMKYCNITP
KAASERTGAIKDNDITLEAMEAWLDEAGVDRRGSTRLRRFAGRGIGLEAS
RELERDSTVASIPLRSCFSSDPVDSPHGTLRALAHVVLEGLSTTATVIHP
ASSVTEVALDKDVMSVTLQVLLECMAGACSEFAPWMAMLPRGGDLNLPAL
WRDDDLRGLEGTLVSREVRQCLTTAETERRHVEALIVSVVGRQVGDNGEG
RGGALLREVLATGDGTLAGRPTLVEWLNARCIVQSRAYRVGERYILIPLV
DFANHDDNVAFSVCPGDGVFTELDEVVLVADRNYQPGQEVCASYGSRMDN
AKRLYSFGFVSLSEPCCSLLGDKIRLPNEAFCDVDVPVDPSDPLCTFKEG
VLRRLLHAEDGAARVEAVFPLQPCCPYVRQLVDGPAMSYLHVLLPLFRFV
ALTSHECLSNGIVVDVSGAKDGSSDIGVVSGEITINNSRGTIDHSDRLAQ
EGAAFPGAWWSPYLVSNEDHTVFAHVRRFVSWDNERLALRLLSEHCVNRL
NAIGLRPSDLEALREAANHGGAEKLNTAEPRGLLIAAARVGEAVAWHALL
GAVNDSVEKDQTWVS*
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mRNA from alignment at H-elongata_contig16546:1184..7169+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16546.4122.1 ID=mRNA_H-elongata_contig16546.4122.1|Name=mRNA_H-elongata_contig16546.4122.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5986bp|location=Sequence derived from alignment at H-elongata_contig16546:1184..7169+ (Himanthalia elongata Himel1 dioecious)
AGGCAGAGGCCAGGTTCTTGCTGGTTCAAGACGCGTGGGAGCACCTGCGG
GACATTGATCTGCGACAGGATTACGACTCTCGTTTGGATCTGCAAGGGAG
GAATGTGGTCGTTTCAGAAGAGGTATGTGTGCAATCATCAACGTAATGCG
CTTCTACATGGAAAACCGAGAGGAATCGAGTATGCTGGATACAAAATCAG
GTTATGTACCATCGCGTCGATGACTTACTGTGATCAAGGGGTAATTGGTC
CTCACAAAACCCTCCACTCACATCATTTGACTTGACTTGACTTGCCGATG
CTGGCCCGATTCATTAAGGTTTAAGACGATTAGCGTTTTAAGTCAAAATA
GGTTTATGGAGCTTTTAAACTTTCCAGAAGCATAGTCTAACTCTAAAGGT
TTTTTGGGCTCAAAAACATATTTTGGTTCTTTATTATTGTATCATTTCCC
CTTTTTATTAAGTTGCATCACCTCTTCAAACCGTCATGCCCACTCTACCC
ATAGCGAGTGTGGGAAAATAGAGGCGTCCAATAATTGGTCCATGGGGTTA
CCTCAATAGGCTGCACCCGTTACTCAAGCTACCTTGAGGATTATTGGCTC
AGTGCCGGCGGACACTTGGTAGTAAACGCCATCGGTACGCAATCGCGTGG
CCTGATGAAATCGGGATTGACCCGATGGTGGTTGACGGTAGAGATGGATG
CCGTCGAGGAAAACTGGAGGATCGAGAGGATCCCGAGAGTAAGCACCAGA
TTCAGCCTGGGTTAAGAGAATCAGCAGGCTGACGCGGGACGGGACTGCTG
AACCCGTCCCGGGAGACCAAATTTTCAGACGCGAACGGGGATAAAATAAA
GTTATATTCCCTTTTTATCAATTTGCATTAGACCGCACAAGACACGTAAG
GGGGCGCCACGCCGGTTTGCGAATGCTCCCCCATTATGGGAAGACCTGTT
CAGCTGACCATGAAGAGAAGGCAAGAAAATCCGGTTGATCTTATTCACCT
AAATGTGATGACCATATATTATACATATATACATTATTAGATCTAGCCCG
TGCAACCAGTGTGATACGCAAGAGGGCGCGGCATCGTTTTATAACCCCCC
CCCCCCATAGGCTCTATCCCTGAAGACGTTGGTTTGTCCATGTTCAGCAG
ACCACCAACCGGATTAGCAACGAACAAACACAGACCAACCGGCATTCCAT
TTATAGGCTCTGGCGATGGGGCATTGTCCTTCGGCGTGCTAGCTAGGTCA
CCACAATTCCACCCAACGCAACGTTTCCCATCCCATCCCATCCCATCCCA
TCTGTGGTCCTAGGTTTGATCAACCCATATATATATATATATATATATAT
ATCACGGAGTAATTCACGCCCACGCTTTTACAGCACTCCTAGAGCTCGTC
GACTATTAGCGGTTGAATTTCTCTTGTACTACTATTAAGAAGGCGGGGGA
GGGAAGCCGTGAAACGGCGAAAGGAGTTGCCCTCACGAGCCCATCCCTCA
GGTCTGAAGTGCCCTTACCCGTGTAGTCCTCGATGGTGTCAGTGTTCACG
TTGTAGAAGAGCGAGTTCATTGTCAGATCCCTTTTGGCAGAAATACGACC
AGGAGAGAGGGAAGGTTAAATTATAGGAAATATTTAGACTAAAATATATG
GTATGTACCGGTATATTTTAATTTACTACATCGTCACTTTGTGGCTGGCG
ATGGGAACGTTGCCCATCATATCTCACCCCATCCTATCTATGGTCATAAG
CGATCAACCCATATCTCACGGGGTAATTCACGCCTACGGTGCTATTTTTT
ATCGCTATCGATATATGTTCAGAATTCCTACACGCGATATGTACGGAAAA
AAAACGAGGCTGGGTCACCTCAATCCTAAGCCAGTCCTACCGTCGACGCC
AATATTATGGGGAATGCCTACGAAAACACTTGGTCACGGTGGGAAAGTCC
AATGTCAATCACCACATGATGAATATTCCTCATAAGTTTGCACTATCCCT
CAGATCGTTATTAATGGCGCTGTAAACCAAACACTTTCCTTGCTCGCGGA
ATCGTCCTGCTGATCGATGACGTACGCACCATGCACTACTCAACACGCAA
CACGGAAGGTGAACCTCACCGAGATGGCTTTCGATGAGTCAGACGGCGGT
ACATTCTCCCATGATTGCCGTTGCGGTGACGCTTACGTTGTGACCGCTGA
CGAGCTTCGCGAAGGTTTCGAAGTTCTGGATTGCGGGGGTTGCAGCCTCT
ACATAAGGGTACGTACGACACCCGGAGGCAAGACCCCGACGCCACCAGCT
GAAGACCCTGGCAAACCCTAAAGCCTCCTCCGACCGAGCACTGGAGGAGG
TAGTGTTGATTGTCTTTCTTTCTTTCTTGGGGTTGGACGTAGAAAATGAG
GCCGATCCGGCTCTATCTGGGGCGATATTTGTTGTTTACCGTCCCCATTG
TAATGGCTATGCGTCCCATGGCGGTCACCTTACCCCGCTCGGGCTGGAGT
ATAACTTTACGACACGAGCGCATGAAGTATTGTAATATAACACCGAAGGC
GGCTTCCGAAAGAACTGGTGCGATCAAAGACAACGATATCACACTGGAAG
CGATGGAGGCGTGGCTGGACGAAGCTGGAGTCGACCGGCGTGGCTCAACG
AGATTGAGGCGTTTTGCCGGGAGGGGGATCGGCCTGGAAGCTTCCCGGGA
GCTCGAGCGTGATTCTACGGTGTGTACCCACATTCTTGCCATGCCAAGTG
TGACTCTCTGCTGGAGGAACACGATACTAGCTTGACGGAACTCCCAAGAT
CTGCACGGTCTCTCGTGCATGCGTGTATGAAATCGTCAGTTCACCTCAAA
CGACTTGAAAGTATAACGACCATCTTTGCTACTAATGTATGATAGGGCTT
TTGTACGCTGCGTTCCCGAAAATGATTAAATATTACCGTTGAAATGAATC
GATTTGCCCATTTACCGTCCGGCCCTGGTCCAGCCCCGCCATCTCGTAGT
GAATAGTGCCGCAAAGATAGCGGATCAAACAAAAAATCAGACGATTTCCA
CAAGTTTACATGTGTGACAAAATGAGGTGGAGAGAGAGAGAAAATCACAA
ACACACACACACACACACACGTGGCAAATATACGATTTATCATGTGTGAA
GATTTTGTACTCAATGTTAGTATTGTACACATTCTAACCTGACGATAGTT
GGTCCCCTGGATTGCACCTCTCATGGTGCTAAGAAGGCGTGAATGTTCGG
AGGGTTGGAATGAGTTGAATTAAAAAAATAAAGTAAAATATAATTGAATC
CCCCATTGGGAGGATCAATGCGAGAGTAGCCTAGAAGAGCTAGCATGACA
GAGCCGGATTGCGCGGTTATGTGCAATTTAATAATTACACACACGACTAC
GGCAAGAGCACCTGGTTCATGAAGTTAATATCGAAGAACGTGCATCCGTA
AAGTTCGTAAGAGTATTTGGAGGGAGTAGTCAACATTTTGTGAGCACAAC
ATTAATCCGTCAATTTATACGGTGCTAGTGCTTGTAGTTGAGCTATCATC
GTGGGCATGCCATGACTCTGATGGTATTTTCCCAGCCTTTTTTTTCTTCT
TGCGCCGTAGGTGGCCAGCATCCCACTTCGTTCGTGTTTCTCGTCGGACC
CCGTCGACTCCCCTCATGGAACTCTGAGAGCACTCGCACACGTTGTCCTT
GAAGGACTTTCTACCACAGCCACCGTGATTCATCCGGCTTCGTCCGTGAC
CGAAGTCGCGCTTGATAAGGACGTCATGTCGGTGACTCTTCAGGTGCTCC
TCGAGTGCATGGCAGGCGCCTGCTCTGAGTTCGCCCCTTGGATGGCCATG
CTGCCTCGTGGTGGAGATCTAAACCTGCCCGCGTTGTGGCGAGACGATGA
CCTCAGAGGCCTTGAGGGAACGCTTGTGTCCCGGGAGGTGAGGCAGTGTT
TGACAACGGCCGAGACGGAGCGCCGACACGTCGAAGCTTTGATTGTAAGC
GTCGTCGGACGACAAGTTGGTGATAACGGAGAGGGTAGAGGGGGCGCACT
CCTACGCGAAGTGCTAGCAACCGGCGATGGAACGTTGGCAGGGAGGCCGA
CGTTGGTGGAGTGGCTGAACGCAAGGTGTATCGTCCAGTCGAGGGCGTAC
CGTGTTGGGGAAAGGTAAGGTGCTATAAGCCAGCCTTGACCAGAACATAG
GATGCTGGAGGCAGCTCATCAGGATCATTTCTAGCGCACGACGAATTGTA
AAGTTTATACGAAGGCGTTTTGAACAGTTTTAAATTTTAGCTTTGTGAAC
GGTGGTTCCAAACATCACTCCCCAGCGATTCAATCCCTTCGTAGATAGCA
AGCATCGCAACGTACCATGTAGCTCTTGCCAAGAGCAAAGCGCTGATTGC
TCTATCAATGATAGCAATCATCACAGCAGCAGTAGAAGAAAAAGTTCACC
GAGTTTTTGTGATCTGACCAGCCGACGACGACTGCCTCTCATCGCTGGAT
CGACGCAGAGCCCTTCGAGGGCCTCGGTTTTACTTTTGCTCGAACTGTTT
CCAACACATTTAAGAATGTCTTTGAAAAGCGATTTTCTGCAGATCAAATT
TTGTGATGCATCATGAACTAACTACCTTCAGTTTCTCGTATCCACGTATG
TATCGCGAAACACACGACTGCACTTCCATGGTACATTTGTAGTGTTTTCC
GTCTCTGCAGCCGGCATCCATGACATCGCCCCTCTCCCCTATCCCTGCAG
ATACATTCTCATTCCACTGGTGGACTTCGCGAATCACGATGACAACGTTG
CATTTTCGGTATGTCCAGGCGACGGCGTTTTCACCGAGCTTGATGAGGTA
AGGTGATCAAAGCGAAGCCGAGATTGTGCACTTCATCCTCTCGTATTGCA
GACGGGGGGCGTTTATCTCGAGTAACATCCAATCTCTTTAAGCTTGCGGA
TGCAGTTGCCTCTTGCCAACTCCACCAACCCATATTCCCATTCATATATT
ATGAGTAAGGTTGGTAAGTAAACCATATTTTTCCGCACAATCTCCTGGTG
GCGGCACGGTTTGACCCGTTACTGTCGGGCGCGACTGCTGCTGCTGCCAT
GCTACACGTGCAGGTGGTACTGGTGGCAGATAGGAACTACCAACCCGGAC
AAGAAGTGTGCGCGTCGTACGGGAGTAGGATGGACAACGCAAAGCGCCTT
TATTCATTCGGCTTCGTAAGTCTCTCCGAGCCTTGCTGTTCACTCCTTGG
CGATAAAATTCGCCTTCCGAACGAAGCGTTTTGTGACGTCGATGTTCCCG
TCGATCCCTCGGACCCCTTGTGTACCTTCAAGGAGGGTGTTCTACGAAGG
CTTCTCCACGCGGAGGACGGGGCAGCGCGCGTCGAAGCTGTGTTCCCTTT
GCAACCTTGTTGCCCGTATGTTCGTCAGCTGGTCGACGGCCCCGCGATGT
CGTACCTTCATGTTCTATTACCGTTGTTTCGCTTTGTCGCTTTAACGTCG
CACGAATGCCTTAGCAACGGGATTGTGGTGGATGTGTCCGGGGCGAAGGA
TGGAAGTTCTGATATCGGGGTGGTGTCTGGGGAGATCACTATCAATAATA
GTCGAGGTACCATTGATCATAGCGACAGACTCGCCCAAGAGGGCGCTGCT
TTTCCAGGAGCGTGGTGGTCACCCTACCTAGTCTCGAACGAAGACCACAC
GGTCTTTGCACACGTCCGACGCTTCGTCTCGTGGGATAACGAGCGACTAG
CACTACGTCTCTTGTCGGAGCATTGCGTTAATCGGCTGAACGCTATTGGT
CTGCGCCCCAGCGATCTCGAGGCGCTCCGGGAAGCTGCAAACCACGGCGG
GGCGGAGAAGCTTAATACAGCCGAGCCACGGGGCTTGCTCATTGCAGCGG
CGCGAGTCGGGGAGGCGGTGGCTTGGCATGCTCTGTTAGGAGCTGTTAAC
GACTCAGTCGAAAAGGATCAAACTTGGGTATCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig16546:1184..7169+

>mRNA_H-elongata_contig16546.4122.1 ID=mRNA_H-elongata_contig16546.4122.1|Name=mRNA_H-elongata_contig16546.4122.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3696bp|location=Sequence derived from alignment at H-elongata_contig16546:1184..7169+ (Himanthalia elongata Himel1 dioecious)
ATGAGGCCGATCCGGCTCTATCTGGGGCGATATTTGTTGTTTACCGTCCC
CATTGTAATGGCTATGCGTCCCATGGCGGTCACCTTACCCCGCTCGGGCT
GGAGTATAACTTTACGACACGAGCGCATGAAGTATTGTAATATAACACCG
AAGGCGGCTTCCGAAAGAACTGGTGCGATCAAAGACAACGATATCACACT
GGAAGCGATGGAGGCGTGGCTGGACGAAGCTGGAGTCGACCGGCGTGGCT
CAACGAGATTGAGGCGTTTTGCCGGGAGGGGGATCGGCCTGGAAGCTTCC
CGGGAGCTCGAGCGTGATTCTACGATGAGGCCGATCCGGCTCTATCTGGG
GCGATATTTGTTGTTTACCGTCCCCATTGTAATGGCTATGCGTCCCATGG
CGGTCACCTTACCCCGCTCGGGCTGGAGTATAACTTTACGACACGAGCGC
ATGAAGTATTGTAATATAACACCGAAGGCGGCTTCCGAAAGAACTGGTGC
GATCAAAGACAACGATATCACACTGGAAGCGATGGAGGCGTGGCTGGACG
AAGCTGGAGTCGACCGGCGTGGCTCAACGAGATTGAGGCGTTTTGCCGGG
AGGGGGATCGGCCTGGAAGCTTCCCGGGAGCTCGAGCGTGATTCTACGGT
GGCCAGCATCCCACTTCGTTCGTGTTTCTCGTCGGACCCCGTCGACTCCC
CTCATGGAACTCTGAGAGCACTCGCACACGTTGTCCTTGAAGGACTTTCT
ACCACAGCCACCGTGATTCATCCGGCTTCGTCCGTGACCGAAGTCGCGCT
TGATAAGGACGTCATGTCGGTGACTCTTCAGGTGCTCCTCGAGTGCATGG
CAGGCGCCTGCTCTGAGTTCGCCCCTTGGATGGCCATGCTGCCTCGTGGT
GGAGATCTAAACCTGCCCGCGTTGTGGCGAGACGATGACCTCAGAGGCCT
TGAGGGAACGCTTGTGTCCCGGGAGGTGAGGCAGTGTTTGACAACGGCCG
AGACGGAGCGCCGACACGTCGAAGCTTTGATTGTAAGCGTCGTCGGACGA
CAAGTTGGTGATAACGGAGAGGGTAGAGGGGGCGCACTCCTACGCGAAGT
GCTAGCAACCGGCGATGGAACGTTGGCAGGGAGGCCGACGTTGGTGGAGT
GGCTGAACGCAAGGTGTATCGTCCAGTCGAGGGCGTACCGTGTTGGGGAA
AGGTGGCCAGCATCCCACTTCGTTCGTGTTTCTCGTCGGACCCCGTCGAC
TCCCCTCATGGAACTCTGAGAGCACTCGCACACGTTGTCCTTGAAGGACT
TTCTACCACAGCCACCGTGATTCATCCGGCTTCGTCCGTGACCGAAGTCG
CGCTTGATAAGGACGTCATGTCGGTGACTCTTCAGGTGCTCCTCGAGTGC
ATGGCAGGCGCCTGCTCTGAGTTCGCCCCTTGGATGGCCATGCTGCCTCG
TGGTGGAGATCTAAACCTGCCCGCGTTGTGGCGAGACGATGACCTCAGAG
GCCTTGAGGGAACGCTTGTGTCCCGGGAGGTGAGGCAGTGTTTGACAACG
GCCGAGACGGAGCGCCGACACGTCGAAGCTTTGATTGTAAGCGTCGTCGG
ACGACAAGTTGGTGATAACGGAGAGGGTAGAGGGGGCGCACTCCTACGCG
AAGTGCTAGCAACCGGCGATGGAACGTTGGCAGGGAGGCCGACGTTGGTG
GAGTGGCTGAACGCAAGGTGTATCGTCCAGTCGAGGGCGTACCGTGTTGG
GGAAAGATACATTCTCATTCCACTGGTGGACTTCGCGAATCACGATGACA
ACGTTGCATTTTCGGTATGTCCAGGCGACGGCGTTTTCACCGAGCTTGAT
GAGATACATTCTCATTCCACTGGTGGACTTCGCGAATCACGATGACAACG
TTGCATTTTCGGTATGTCCAGGCGACGGCGTTTTCACCGAGCTTGATGAG
GTGGTACTGGTGGCAGATAGGAACTACCAACCCGGACAAGAAGTGTGCGC
GTCGTACGGGAGTAGGATGGACAACGCAAAGCGCCTTTATTCATTCGGCT
TCGTAAGTCTCTCCGAGCCTTGCTGTTCACTCCTTGGCGATAAAATTCGC
CTTCCGAACGAAGCGTTTTGTGACGTCGATGTTCCCGTCGATCCCTCGGA
CCCCTTGTGTACCTTCAAGGAGGGTGTTCTACGAAGGCTTCTCCACGCGG
AGGACGGGGCAGCGCGCGTCGAAGCTGTGTTCCCTTTGCAACCTTGTTGC
CCGTATGTTCGTCAGCTGGTCGACGGCCCCGCGATGTCGTACCTTCATGT
TCTATTACCGTTGTTTCGCTTTGTCGCTTTAACGTCGCACGAATGCCTTA
GCAACGGGATTGTGGTGGATGTGTCCGGGGCGAAGGATGGAAGTTCTGAT
ATCGGGGTGGTGTCTGGGGAGATCACTATCAATAATAGTCGAGGTACCAT
TGATCATAGCGACAGACTCGCCCAAGAGGGCGCTGCTTTTCCAGGAGCGT
GGTGGTCACCCTACCTAGTCTCGAACGAAGACCACACGGTCTTTGCACAC
GTCCGACGCTTCGTCTCGTGGGATAACGAGCGACTAGCACTACGTCTCTT
GTCGGAGCATTGCGTTAATCGGCTGAACGCTATTGGTCTGCGCCCCAGCG
ATCTCGAGGCGCTCCGGGAAGCTGCAAACCACGGCGGGGCGGAGAAGCTT
AATACAGCCGAGCCACGGGGCTTGCTCATTGCAGCGGCGCGAGTCGGGGA
GGCGGTGGCTTGGCATGCTCTGTTAGGAGCTGTTAACGACTCAGTCGAAA
AGGATCAAACTTGGGTATCGTGAGTGGTACTGGTGGCAGATAGGAACTAC
CAACCCGGACAAGAAGTGTGCGCGTCGTACGGGAGTAGGATGGACAACGC
AAAGCGCCTTTATTCATTCGGCTTCGTAAGTCTCTCCGAGCCTTGCTGTT
CACTCCTTGGCGATAAAATTCGCCTTCCGAACGAAGCGTTTTGTGACGTC
GATGTTCCCGTCGATCCCTCGGACCCCTTGTGTACCTTCAAGGAGGGTGT
TCTACGAAGGCTTCTCCACGCGGAGGACGGGGCAGCGCGCGTCGAAGCTG
TGTTCCCTTTGCAACCTTGTTGCCCGTATGTTCGTCAGCTGGTCGACGGC
CCCGCGATGTCGTACCTTCATGTTCTATTACCGTTGTTTCGCTTTGTCGC
TTTAACGTCGCACGAATGCCTTAGCAACGGGATTGTGGTGGATGTGTCCG
GGGCGAAGGATGGAAGTTCTGATATCGGGGTGGTGTCTGGGGAGATCACT
ATCAATAATAGTCGAGGTACCATTGATCATAGCGACAGACTCGCCCAAGA
GGGCGCTGCTTTTCCAGGAGCGTGGTGGTCACCCTACCTAGTCTCGAACG
AAGACCACACGGTCTTTGCACACGTCCGACGCTTCGTCTCGTGGGATAAC
GAGCGACTAGCACTACGTCTCTTGTCGGAGCATTGCGTTAATCGGCTGAA
CGCTATTGGTCTGCGCCCCAGCGATCTCGAGGCGCTCCGGGAAGCTGCAA
ACCACGGCGGGGCGGAGAAGCTTAATACAGCCGAGCCACGGGGCTTGCTC
ATTGCAGCGGCGCGAGTCGGGGAGGCGGTGGCTTGGCATGCTCTGTTAGG
AGCTGTTAACGACTCAGTCGAAAAGGATCAAACTTGGGTATCGTGA
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