mRNA_H-elongata_contig165455.4121.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165455.4121.1
Unique NamemRNA_H-elongata_contig165455.4121.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165455.4121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165455contigH-elongata_contig165455:302..922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size623
Cds size621
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929968.2302477-CDS-H-elongata_contig165455:301..9221622929968.2302477-CDS-H-elongata_contig165455:301..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165455 302..922 +
1691679228.015921-CDS-H-elongata_contig165455:301..9221691679228.015921-CDS-H-elongata_contig165455:301..922Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165455 302..922 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165455.4121.1prot_H-elongata_contig165455.4121.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165455 302..922 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165455.4121.1

>prot_H-elongata_contig165455.4121.1 ID=prot_H-elongata_contig165455.4121.1|Name=mRNA_H-elongata_contig165455.4121.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
MGSISSLKNKTLRGRTYPNEALSRDGKKKQKKNEVKEARTTAITERLANA
IERSCQDACEKEAIAAVKEVGAELRTANKLRGRSVAYAERDKKIGWMRDE
IQVLKDMGEDENAKAVQRRLLELMRAPVHVETPSGRAGRDSDDRALLTRN
NSSVGCSANVSFHPSAVGDRLLDMDGGPQGEGSCGSSNGSRDPHFGCRAA
IQEIHDD
back to top

mRNA from alignment at H-elongata_contig165455:302..922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165455.4121.1 ID=mRNA_H-elongata_contig165455.4121.1|Name=mRNA_H-elongata_contig165455.4121.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at H-elongata_contig165455:302..922+ (Himanthalia elongata Himel1 dioecious)
ATGGGCTCGATTTCGTCGCTAAAAAACAAAACCCTCCGGGGAAGAACCTA
CCCGAACGAGGCCCTCAGCAGGGATGGCAAAAAAAAACAAAAAAAGAATG
AAGTGAAGGAGGCACGCACAACCGCGATAACGGAGCGCTTGGCGAATGCG
ATCGAGCGCAGCTGTCAAGATGCGTGCGAGAAGGAGGCGATAGCTGCTGT
AAAAGAAGTCGGTGCGGAACTTCGAACCGCAAACAAGCTACGCGGGCGCT
CCGTTGCGTACGCAGAAAGAGACAAGAAGATCGGATGGATGCGCGACGAA
ATTCAAGTGCTTAAAGATATGGGAGAGGATGAAAACGCCAAGGCGGTGCA
GAGACGGCTACTTGAGCTCATGCGAGCCCCTGTCCACGTCGAGACTCCGT
CGGGACGCGCCGGTCGCGATAGCGATGATAGAGCACTTTTGACGAGAAAT
AATTCTAGTGTGGGCTGCTCCGCCAACGTCTCCTTCCACCCAAGCGCCGT
TGGGGACCGCCTTCTGGACATGGACGGTGGACCTCAGGGTGAGGGCTCCT
GCGGGAGTAGTAACGGGTCACGAGACCCGCATTTCGGCTGTAGAGCAGCA
ATTCAAGAGATTCACGACGAC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig165455:302..922+

>mRNA_H-elongata_contig165455.4121.1 ID=mRNA_H-elongata_contig165455.4121.1|Name=mRNA_H-elongata_contig165455.4121.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig165455:302..922+ (Himanthalia elongata Himel1 dioecious)
ATGGGCTCGATTTCGTCGCTAAAAAACAAAACCCTCCGGGGAAGAACCTA
CCCGAACGAGGCCCTCAGCAGGGATGGCAAAAAAAAACAAAAAAAGAATG
AAGTGAAGGAGGCACGCACAACCGCGATAACGGAGCGCTTGGCGAATGCG
ATCGAGCGCAGCTGTCAAGATGCGTGCGAGAAGGAGGCGATAGCTGCTGT
AAAAGAAGTCGGTGCGGAACTTCGAACCGCAAACAAGCTACGCGGGCGCT
CCGTTGCGTACGCAGAAAGAGACAAGAAGATCGGATGGATGCGCGACGAA
ATTCAAGTGCTTAAAGATATGGGAGAGGATGAAAACGCCAAGGCGGTGCA
GAGACGGCTACTTGAGCTCATGCGAGCCCCTGTCCACGTCGAGACTCCGT
CGGGACGCGCCGGTCGCGATAGCGATGATAGAGCACTTTTGACGAGAAAT
AATTCTAGTGTGGGCTGCTCCGCCAACGTCTCCTTCCACCCAAGCGCCGT
TGGGGACCGCCTTCTGGACATGGACGGTGGACCTCAGGGTGAGGGCTCCT
GCGGGAGTAGTAACGGGTCACGAGACCCGCATTTCGGCTGTAGAGCAGCA
ATTCAAGAGATTCACGACGACATGGGCTCGATTTCGTCGCTAAAAAACAA
AACCCTCCGGGGAAGAACCTACCCGAACGAGGCCCTCAGCAGGGATGGCA
AAAAAAAACAAAAAAAGAATGAAGTGAAGGAGGCACGCACAACCGCGATA
ACGGAGCGCTTGGCGAATGCGATCGAGCGCAGCTGTCAAGATGCGTGCGA
GAAGGAGGCGATAGCTGCTGTAAAAGAAGTCGGTGCGGAACTTCGAACCG
CAAACAAGCTACGCGGGCGCTCCGTTGCGTACGCAGAAAGAGACAAGAAG
ATCGGATGGATGCGCGACGAAATTCAAGTGCTTAAAGATATGGGAGAGGA
TGAAAACGCCAAGGCGGTGCAGAGACGGCTACTTGAGCTCATGCGAGCCC
CTGTCCACGTCGAGACTCCGTCGGGACGCGCCGGTCGCGATAGCGATGAT
AGAGCACTTTTGACGAGAAATAATTCTAGTGTGGGCTGCTCCGCCAACGT
CTCCTTCCACCCAAGCGCCGTTGGGGACCGCCTTCTGGACATGGACGGTG
GACCTCAGGGTGAGGGCTCCTGCGGGAGTAGTAACGGGTCACGAGACCCG
CATTTCGGCTGTAGAGCAGCAATTCAAGAGATTCACGACGAC
back to top