mRNA_H-elongata_contig165430.4119.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165430.4119.1
Unique NamemRNA_H-elongata_contig165430.4119.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A6H5L0N9_9PHAE (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0N9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.600e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   22 ASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 153
            A LS+MDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR
Sbjct: 2230 ACLSIMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 2273
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BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: D7G846_ECTSI (DNA polymerase zeta catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G846_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.600e-17
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:   22 ASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 153
            A LS+MDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR
Sbjct: 2335 ACLSIMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 2378
[Close]
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: W7T133_9STRA (Dna polymerase zeta subunit n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T133_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.830e-15
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:   16 TQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLRYN 159
            ++ +L V+D+LDLLGRTSEMAR+FGIDFFSVL+RGSQYRVEAV+ R +
Sbjct:   55 SRLNLEVLDRLDLLGRTSEMARVFGIDFFSVLNRGSQYRVEAVLGRVS 102
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BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A7S0NZV1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NZV1_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.810e-13
Identity = 32/46 (69.57%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 TQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 153
            TQ SL V D L+L+ RTSE+AR+FGIDF+SVL+RGSQYRVE+++LR
Sbjct:   16 TQLSLEVADALELISRTSELARVFGIDFYSVLTRGSQYRVESMLLR 61
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BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A1W0A9K2_9STRA (DNA polymerase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9K2_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-13
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 TQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 153
            T+ +L VMD++ L+ RTSEMARLFGIDFFSVLSRGSQYRVEAV +R
Sbjct:  829 TELNLKVMDRMQLITRTSEMARLFGIDFFSVLSRGSQYRVEAVNIR 874
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BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A067D8T0_SAPPC (DNA polymerase n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067D8T0_SAPPC)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-13
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 TQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 153
            T+ +L +MD+L L+ RTSEMARLFGIDFFSVLSRGSQYRVEAV +R
Sbjct:  844 TEVTLKLMDRLQLITRTSEMARLFGIDFFSVLSRGSQYRVEAVNIR 889
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BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: T0R4D0_SAPDV (DNA polymerase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R4D0_SAPDV)

HSP 1 Score: 72.4 bits (176), Expect = 2.200e-13
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:   16 TQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 153
            T+ +L +MD+L L+ RTSEMARLFGIDFFSVLSRGSQYRVEAV +R
Sbjct:  848 TEVTLKLMDRLQLITRTSEMARLFGIDFFSVLSRGSQYRVEAVNIR 893
[Close]
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A1D1ZNX4_AUXPR (DNA polymerase (Fragment) n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZNX4_AUXPR)

HSP 1 Score: 72.0 bits (175), Expect = 2.990e-13
Identity = 33/43 (76.74%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:   25 SLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 153
            +LS++D+LD++GRTSE+AR FGIDFFSVLSRGSQYRVE++MLR
Sbjct:   99 NLSLLDRLDVVGRTSELARAFGIDFFSVLSRGSQYRVESMMLR 141
[Close]
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A1D2AAG3_AUXPR (DNA polymerase zeta catalytic subunit n=3 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AAG3_AUXPR)

HSP 1 Score: 72.0 bits (175), Expect = 3.020e-13
Identity = 33/43 (76.74%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:   25 SLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLR 153
            +LS++D+LD++GRTSE+AR FGIDFFSVLSRGSQYRVE++MLR
Sbjct: 1618 NLSLLDRLDVVGRTSELARAFGIDFFSVLSRGSQYRVESMMLR 1660
[Close]
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Match: A0A7S3VKE1_DUNTE (DNA polymerase (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VKE1_DUNTE)

HSP 1 Score: 71.6 bits (174), Expect = 4.100e-13
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:   25 SLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVMLRYNILYCNIL 180
            SL +MD LDL+GRT+E+AR FGIDFFSVL+RGSQYRVE++MLR +   CN L
Sbjct:  461 SLLMMDSLDLIGRTAELARTFGIDFFSVLTRGSQYRVESLMLRLSHA-CNYL 511
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165430.4119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0N9_9PHAE2.600e-1795.45DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
D7G846_ECTSI2.600e-1795.45DNA polymerase zeta catalytic subunit n=1 Tax=Ecto... [more]
W7T133_9STRA1.830e-1572.92Dna polymerase zeta subunit n=1 Tax=Nannochloropsi... [more]
A0A7S0NZV1_9EUKA1.810e-1369.57Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A1W0A9K2_9STRA2.200e-1376.09DNA polymerase n=1 Tax=Thraustotheca clavata TaxID... [more]
A0A067D8T0_SAPPC2.200e-1376.09DNA polymerase n=1 Tax=Saprolegnia parasitica (str... [more]
T0R4D0_SAPDV2.200e-1376.09DNA polymerase n=1 Tax=Saprolegnia diclina (strain... [more]
A0A1D1ZNX4_AUXPR2.990e-1376.74DNA polymerase (Fragment) n=2 Tax=Auxenochlorella ... [more]
A0A1D2AAG3_AUXPR3.020e-1376.74DNA polymerase zeta catalytic subunit n=3 Tax=Auxe... [more]
A0A7S3VKE1_DUNTE4.100e-1369.23DNA polymerase (Fragment) n=1 Tax=Dunaliella terti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165430contigH-elongata_contig165430:941..1123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue9.4e-15
Seed eggNOG ortholog2880.D7G846
Preferred nameAHDC1
KEGG koko:K02350
KEGG Pathwayko01100,ko01524,ko03460,map01100,map01524,map03460
KEGG ModuleM00293
GOsGO:0000002,GO:0000228,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016035,GO:0016043,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042276,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0043596,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA polymerase activity
EggNOG OGsCOG0417@1,KOG0968@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size183
Cds size183
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.9942362-CDS-H-elongata_contig165430:940..11231622929967.9942362-CDS-H-elongata_contig165430:940..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165430 941..1123 +
1691679227.891971-CDS-H-elongata_contig165430:940..11231691679227.891971-CDS-H-elongata_contig165430:940..1123Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165430 941..1123 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165430.4119.1prot_H-elongata_contig165430.4119.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165430 941..1123 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165430.4119.1

>prot_H-elongata_contig165430.4119.1 ID=prot_H-elongata_contig165430.4119.1|Name=mRNA_H-elongata_contig165430.4119.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
FSFWWTQASLSVMDKLDLLGRTSEMARLFGIDFFSVLSRGSQYRVEAVML
RYNILYCNIL*
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mRNA from alignment at H-elongata_contig165430:941..1123+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165430.4119.1 ID=mRNA_H-elongata_contig165430.4119.1|Name=mRNA_H-elongata_contig165430.4119.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=183bp|location=Sequence derived from alignment at H-elongata_contig165430:941..1123+ (Himanthalia elongata Himel1 dioecious)
TTCTCGTTCTGGTGGACGCAGGCTAGCCTGTCCGTCATGGACAAGCTGGA
TCTGCTGGGAAGGACGTCGGAGATGGCGAGGCTGTTCGGCATCGATTTCT
TTAGCGTGCTCTCGAGGGGGTCCCAGTACCGCGTCGAGGCCGTCATGCTC
CGGTATAATATACTATACTGTAATATACTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig165430:941..1123+

>mRNA_H-elongata_contig165430.4119.1 ID=mRNA_H-elongata_contig165430.4119.1|Name=mRNA_H-elongata_contig165430.4119.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig165430:941..1123+ (Himanthalia elongata Himel1 dioecious)
TTCTCGTTCTGGTGGACGCAGGCTAGCCTGTCCGTCATGGACAAGCTGGA
TCTGCTGGGAAGGACGTCGGAGATGGCGAGGCTGTTCGGCATCGATTTCT
TTAGCGTGCTCTCGAGGGGGTCCCAGTACCGCGTCGAGGCCGTCATGCTC
CGGTATAATATACTATACTGTAATATACTGTAATTCTCGTTCTGGTGGAC
GCAGGCTAGCCTGTCCGTCATGGACAAGCTGGATCTGCTGGGAAGGACGT
CGGAGATGGCGAGGCTGTTCGGCATCGATTTCTTTAGCGTGCTCTCGAGG
GGGTCCCAGTACCGCGTCGAGGCCGTCATGCTCCGGTATAATATACTATA
CTGTAATATACTGTAA
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