mRNA_H-elongata_contig16539.4118.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16539.4118.1
Unique NamemRNA_H-elongata_contig16539.4118.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16539.4118.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.670e-21
Identity = 51/104 (49.04%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 SQVADRLAQFVRTYLGIEKKRVIQDVVTRWSSTCTMVERLLKLGEPIKKHEEADKVETLLTAADWAVLEMVLPVLQPFMQTQKLLEGRKYITGSLVVPFTHGLR 312
            SQ++ RLA F+   L +    V+QDV TRW S+  M+ERLL L + IK HE  D +  +L+  DW VL ++ P+L+PFMQ QK LEG KY+TGS+ VP    LR
Sbjct:  207 SQMSGRLAVFIGI-LKLSPLSVLQDVETRWWSSWAMIERLLYLMKAIKLHESTDNIAPVLSETDWEVLRLIEPILRPFMQAQKDLEGAKYVTGSMTVPKIGELR 309          
BLAST of mRNA_H-elongata_contig16539.4118.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.670e-19
Identity = 48/104 (46.15%), Postives = 67/104 (64.42%), Query Frame = 1
Query:    1 SQVADRLAQFVRTYLGIEKKRVIQDVVTRWSSTCTMVERLLKLGEPIKKHEEADKVETLLTAADWAVLEMVLPVLQPFMQTQKLLEGRKYITGSLVVPFTHGLR 312
            SQ +DRL Q +R  + +E+K+V+QDV TRW ST   + RLL L  PI +HE  D +  LL   DW VL++V P+ +PF+ +QK  E  K +T SLV+P+   LR
Sbjct:  180 SQASDRLEQ-MRDIVQVERKKVVQDVETRWWSTYASICRLLSLRRPITEHERIDSIPPLLKEKDWEVLQVVEPLSKPFILSQKHREASKDVTVSLVIPYIADLR 282          
BLAST of mRNA_H-elongata_contig16539.4118.1 vs. uniprot
Match: A0A6G0VPN6_APHCR (Zinc finger BED domain-containing protein 1-like (Fragment) n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0VPN6_APHCR)

HSP 1 Score: 71.6 bits (174), Expect = 2.350e-12
Identity = 42/107 (39.25%), Postives = 60/107 (56.07%), Query Frame = 1
Query:    1 SQVADRLAQFVRTYLGIEKKRVIQDVVTRWSSTCTMVERLLKLGEPIKKHEEADKV-ETLLTAADWAVLEMVLPVLQPFMQTQKLLEGRKYITGSLVVPFTHGLRTS 318
            S+VA R        LG  K ++ QDV TRW+S+  M+ERL+KL EP+     + K    +L A +W V+E V+P+L+PF      L G  Y T ++V+P   GL  S
Sbjct:  260 SEVASRKLAEKLIQLGASKLKLKQDVSTRWNSSLLMLERLVKLKEPLTYAMLSLKDGPVMLNAQEWEVIEYVIPILKPFEVMTTELSGENYPTLAMVIPLVRGLHIS 366          
BLAST of mRNA_H-elongata_contig16539.4118.1 vs. uniprot
Match: UPI001A9D9B41 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001A9D9B41)

HSP 1 Score: 69.7 bits (169), Expect = 1.000e-11
Identity = 35/88 (39.77%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   43 LGIEKKRVIQDVVTRWSSTCTMVERLLKLGEPIKKH-EEADKVETL---LTAADWAVLEMVLPVLQPFMQTQKLLEGRKYITGSLVVP 294
            LG  KK++ QD+ TRW+ST  M+  LL+L EP+++  E++  +++    LT  DW +LE +  VL+P +   +LL G KY+T S+++P
Sbjct:  112 LGAPKKKLQQDIATRWNSTYIMITSLLELKEPLRRSMEDSSTIKSSIPHLTDVDWDMLEQLREVLKPLLDITELLGGDKYVTRSVLIP 199          
BLAST of mRNA_H-elongata_contig16539.4118.1 vs. uniprot
Match: UPI001AD6D62A (E3 SUMO-protein ligase ZBED1 n=1 Tax=Ixodes scapularis TaxID=6945 RepID=UPI001AD6D62A)

HSP 1 Score: 69.7 bits (169), Expect = 1.130e-11
Identity = 35/88 (39.77%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   43 LGIEKKRVIQDVVTRWSSTCTMVERLLKLGEPIKKH-EEADKVETL---LTAADWAVLEMVLPVLQPFMQTQKLLEGRKYITGSLVVP 294
            LG  KK++ QD+ TRW+ST  M+  LL+L EP+++  E++  +++    LT  DW +LE +  VL+P +   +LL G KY+T S+++P
Sbjct:  317 LGAPKKKLQQDIATRWNSTYIMITSLLELKEPLRRSMEDSSTIKSSIPHLTDVDWDMLEQLREVLKPLLDITELLGGDKYVTRSVLIP 404          
BLAST of mRNA_H-elongata_contig16539.4118.1 vs. uniprot
Match: UPI001EE9F9CC (uncharacterized protein LOC124373333 n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EE9F9CC)

HSP 1 Score: 67.0 bits (162), Expect = 4.690e-11
Identity = 32/90 (35.56%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   43 LGIEKKRVIQDVVTRWSSTCTMVERLLKLGEPIKKHEEA-DKVETLLTAADWAVLEMVLPVLQPFMQTQKLLEGRKYITGSLVVPFTHGL 309
            +G+E K++IQ+V TRW+ST  MV R ++L + +K      +K   +L+  +W + + +  +L+PF +    + G +Y+TGS V+P T GL
Sbjct:    1 MGLEPKKLIQEVSTRWNSTFYMVSRFVELQDAVKTTIALINKNLPVLSEEEWGLCKELSTILRPFEEVTSQISGERYVTGSQVIPLTRGL 90          
BLAST of mRNA_H-elongata_contig16539.4118.1 vs. uniprot
Match: UPI001EEB5596 (zinc finger BED domain-containing protein 4-like n=6 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EEB5596)

HSP 1 Score: 67.0 bits (162), Expect = 7.790e-11
Identity = 32/90 (35.56%), Postives = 56/90 (62.22%), Query Frame = 1
Query:   43 LGIEKKRVIQDVVTRWSSTCTMVERLLKLGEPIKKHEEA-DKVETLLTAADWAVLEMVLPVLQPFMQTQKLLEGRKYITGSLVVPFTHGL 309
            +G+E K++IQ+V TRW+ST  MV R ++L + +K      +K   +L+  +W + + +  +L+PF +    + G +Y+TGS V+P T GL
Sbjct:   30 MGLEPKKLIQEVSTRWNSTFYMVSRFVELQDAVKTTIALINKNLPVLSEEEWGLCKELSTILRPFEEVTSQISGERYVTGSQVIPLTRGL 119          
BLAST of mRNA_H-elongata_contig16539.4118.1 vs. uniprot
Match: A0A2S2QZ19_9HEMI (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2QZ19_9HEMI)

HSP 1 Score: 64.7 bits (156), Expect = 1.290e-10
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 1
Query:    1 SQVADRLAQFVRTYLGIEKK-RVIQDVVTRWSSTCTMVERLLKLGEPIKKHEEADK-VETLLTAADWAVLEMVLPVLQPFMQTQKLLEGRKYITGSLVVPFTHGLRTS 318
            S+V +R+    +  LG  +  ++ QDV TRW+ST  M+ERL+KL EP+     + K   + LT  +W ++E ++P+L PF      L   +Y T S VVP   GL+TS
Sbjct:   52 SEVGNRILGEKQRQLGFTQLLKLKQDVRTRWNSTLIMLERLVKLKEPLTVTMISVKEAPSNLTLEEWVIIEDIVPLLGPFNSLTIELSAEQYPTISKVVPLLRGLQTS 159          
BLAST of mRNA_H-elongata_contig16539.4118.1 vs. uniprot
Match: A0A2S2N9F7_SCHGA (Zinc finger BED domain-containing protein 1 n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2N9F7_SCHGA)

HSP 1 Score: 64.3 bits (155), Expect = 1.470e-10
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 SQVADRLAQFVRTYLGIEKK-RVIQDVVTRWSSTCTMVERLLKLGEPIKKHEEADKVETL-LTAADWAVLEMVLPVLQPFMQTQKLLEGRKYITGSLVVPFTHGLRTS 318
            S+VA+R+    +  LG E   ++ QDV TRW+ST  M+ERL+KL EP+       K  +  L + +W ++E V+P+L+PF +    L   +Y T S V+P   GL+ S
Sbjct:   44 SEVANRMLMDKQKQLGFETVLKLNQDVHTRWNSTFFMLERLIKLKEPLTIVMITLKDASCHLNSHEWNIIEDVVPLLRPFDRVTVELSAEQYPTISTVIPLIRGLQVS 151          
BLAST of mRNA_H-elongata_contig16539.4118.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 2.330e-10
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1
Query:    1 SQVADRLAQFVRTYLGIEKKRVIQDVVTRWSSTCTMVERLLKLGEPIKKHEEADKVETLLTAADWAVLEMVLPVLQPFMQTQKLLEGRKYITGSLVVPFTHGLR 312
            SQ ++RL Q     + +E+K+V+QDV TRW ST                  E D +  LL   DW VL++V P+L PFM  QK LE  K +T SLV  +   LR
Sbjct:  124 SQASNRLEQMC-DIVQVERKKVVQDVETRWWST----------------PREIDSIPPLLNEKDWEVLQLVEPLLHPFMTAQKHLEASKGVTVSLVTAYIADLR 210          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16539.4118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE2.670e-2149.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE3.670e-1946.15Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6G0VPN6_APHCR2.350e-1239.25Zinc finger BED domain-containing protein 1-like (... [more]
UPI001A9D9B411.000e-1139.77E3 SUMO-protein ligase ZBED1-like n=1 Tax=Ixodes s... [more]
UPI001AD6D62A1.130e-1139.77E3 SUMO-protein ligase ZBED1 n=1 Tax=Ixodes scapul... [more]
UPI001EE9F9CC4.690e-1135.56uncharacterized protein LOC124373333 n=1 Tax=Homal... [more]
UPI001EEB55967.790e-1135.56zinc finger BED domain-containing protein 4-like n... [more]
A0A2S2QZ19_9HEMI1.290e-1037.96Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A2S2N9F7_SCHGA1.470e-1037.96Zinc finger BED domain-containing protein 1 n=1 Ta... [more]
A0A6H5KVI1_9PHAE2.330e-1039.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16539contigH-elongata_contig16539:4273..4590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.9302223-CDS-H-elongata_contig16539:4272..45901622929967.9302223-CDS-H-elongata_contig16539:4272..4590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16539 4273..4590 +
1691679227.8788805-CDS-H-elongata_contig16539:4272..45901691679227.8788805-CDS-H-elongata_contig16539:4272..4590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16539 4273..4590 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16539.4118.1prot_H-elongata_contig16539.4118.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16539 4273..4590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16539.4118.1

>prot_H-elongata_contig16539.4118.1 ID=prot_H-elongata_contig16539.4118.1|Name=mRNA_H-elongata_contig16539.4118.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
SQVADRLAQFVRTYLGIEKKRVIQDVVTRWSSTCTMVERLLKLGEPIKKH
EEADKVETLLTAADWAVLEMVLPVLQPFMQTQKLLEGRKYITGSLVVPFT
HGLRTS
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mRNA from alignment at H-elongata_contig16539:4273..4590+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16539.4118.1 ID=mRNA_H-elongata_contig16539.4118.1|Name=mRNA_H-elongata_contig16539.4118.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig16539:4273..4590+ (Himanthalia elongata Himel1 dioecious)
AGCCAGGTGGCCGACCGGCTTGCGCAGTTCGTCCGAACCTACCTTGGTAT CGAGAAAAAGAGGGTGATCCAAGACGTGGTAACTAGGTGGTCGTCCACGT GCACTATGGTGGAGCGGCTGCTGAAGTTGGGGGAACCCATCAAGAAGCAC GAGGAGGCGGACAAGGTTGAGACGCTACTGACGGCCGCAGACTGGGCGGT GCTTGAGATGGTACTTCCTGTGCTGCAGCCGTTCATGCAAACGCAGAAAT TGCTGGAGGGCCGCAAATACATAACGGGAAGCTTGGTGGTACCCTTCACC CACGGCCTCCGCACCAGC
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Coding sequence (CDS) from alignment at H-elongata_contig16539:4273..4590+

>mRNA_H-elongata_contig16539.4118.1 ID=mRNA_H-elongata_contig16539.4118.1|Name=mRNA_H-elongata_contig16539.4118.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig16539:4273..4590+ (Himanthalia elongata Himel1 dioecious)
AGCCAGGTGGCCGACCGGCTTGCGCAGTTCGTCCGAACCTACCTTGGTAT
CGAGAAAAAGAGGGTGATCCAAGACGTGGTAACTAGGTGGTCGTCCACGT
GCACTATGGTGGAGCGGCTGCTGAAGTTGGGGGAACCCATCAAGAAGCAC
GAGGAGGCGGACAAGGTTGAGACGCTACTGACGGCCGCAGACTGGGCGGT
GCTTGAGATGGTACTTCCTGTGCTGCAGCCGTTCATGCAAACGCAGAAAT
TGCTGGAGGGCCGCAAATACATAACGGGAAGCTTGGTGGTACCCTTCACC
CACGGCCTCCGCACCAGCAGCCAGGTGGCCGACCGGCTTGCGCAGTTCGT
CCGAACCTACCTTGGTATCGAGAAAAAGAGGGTGATCCAAGACGTGGTAA
CTAGGTGGTCGTCCACGTGCACTATGGTGGAGCGGCTGCTGAAGTTGGGG
GAACCCATCAAGAAGCACGAGGAGGCGGACAAGGTTGAGACGCTACTGAC
GGCCGCAGACTGGGCGGTGCTTGAGATGGTACTTCCTGTGCTGCAGCCGT
TCATGCAAACGCAGAAATTGCTGGAGGGCCGCAAATACATAACGGGAAGC
TTGGTGGTACCCTTCACCCACGGCCTCCGCACCAGC
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