mRNA_H-elongata_contig165363.4116.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE) HSP 1 Score: 140 bits (352), Expect = 4.730e-36 Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 537
KADPCVFRK+V+ +++ ++VDDIL D+ ++ A L +KF K++G+ +++ GC I R+ +A L+I Q Y++SMVE+FDVK S IPAT G G E EE ++P REA+G++MW T +RPD + AV AVAR P H A+ KI+ YL T+D GI
Sbjct: 199 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-------GPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 369
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6A4DAE2_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4DAE2_9STRA) HSP 1 Score: 134 bits (337), Expect = 7.500e-36 Identity = 75/180 (41.67%), Postives = 112/180 (62.22%), Query Frame = 1
Query: 4 ADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDI--PATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 537
ADPCV+ + GE E +V ++VDD+L ++ KA + A + +KF++KD+G AR+ +G I + + R L I Q+ Y ES+++KF + P V L+KADEP E+K +M+ PYR VG+LM+ TRPD + AV+ ++RF ENPG H A +K+++YLL TKD GI
Sbjct: 8 ADPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPPEPAV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGI 185
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE) HSP 1 Score: 138 bits (348), Expect = 1.010e-35 Identity = 76/179 (42.46%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 537
KADPCVFRK+V+ +++ ++VDDIL D+ ++ A L +KF K++G+ +++ GC I R+ +A L+I Q Y++SMVE+FDV+ S IPAT G G E EE ++P REA+G++MW T +RPD + AV AVAR P H A+ KI+ YL T+D GI
Sbjct: 135 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADL-------GPQREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 305
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6A3G781_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3G781_9STRA) HSP 1 Score: 132 bits (332), Expect = 2.640e-35 Identity = 76/180 (42.22%), Postives = 112/180 (62.22%), Query Frame = 1
Query: 4 ADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVK--KGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 537
ADPC + + GE E +V ++VDD+L ++ KA + A + +KF+ KD+G AR+ +G I + + R L I Q+ Y ES+++KF + K P GV L+KADEP E+K +M+ PYR VG+LM+ TRPD + AV+ ++RF ENPG H A +K+++YLL TKD GI
Sbjct: 34 ADPCDYTRG-EGEDECIVCLYVDDMLIASRQKAAIVSVKAGIAEKFRTKDLGRARFILGIEIDYDMERRTLDISQKAYTESIIKKFGQENTKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGI 211
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6A4F359_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4F359_9STRA) HSP 1 Score: 136 bits (343), Expect = 2.750e-35 Identity = 77/180 (42.78%), Postives = 113/180 (62.78%), Query Frame = 1
Query: 4 ADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDI--PATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 537
ADPCV+ + GE E +V ++VDD+L ++ KA + A + +KF++KDMG AR+ +G I + + R L I Q+ Y ES+++KF + P GV L+KADEP E+K +M+ PYR VG+LM+ TRPD + AV+ ++RF ENPG H A +K+++YLL TKD GI
Sbjct: 58 ADPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQIEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGI 235
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 140 bits (352), Expect = 3.800e-35 Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 537
KADPCVFRK+V+ +++ ++VDDIL D+ ++ A L +KF K++G+ +++ GC I R+ +A L+I Q Y++SMVE+FDVK S IPAT G G E EE ++P REA+G++MW T +RPD + AV AVAR P H A+ KI+ YL T+D GI
Sbjct: 912 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-------GPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 1082
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 140 bits (352), Expect = 3.890e-35 Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 537
KADPCVFRK+V+ +++ ++VDDIL D+ ++ A L +KF K++G+ +++ GC I R+ +A L+I Q Y++SMVE+FDVK S IPAT G G E EE ++P REA+G++MW T +RPD + AV AVAR P H A+ KI+ YL T+D GI
Sbjct: 1291 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-------GPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 1461
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 140 bits (352), Expect = 3.910e-35 Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 537
KADPCVFRK+V+ +++ ++VDDIL D+ ++ A L +KF K++G+ +++ GC I R+ +A L+I Q Y++SMVE+FDVK S IPAT G G E EE ++P REA+G++MW T +RPD + AV AVAR P H A+ KI+ YL T+D GI
Sbjct: 1311 KADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-------GPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 1481
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 140 bits (352), Expect = 3.920e-35 Identity = 77/179 (43.02%), Postives = 110/179 (61.45%), Query Frame = 1
Query: 1 KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSDIPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 537
KADPCVFRK+V+ +++ ++VDDIL D+ ++ A L +KF K++G+ +++ GC I R+ +A L+I Q Y++SMVE+FDVK S IPAT G G E EE ++P REA+G++MW T +RPD + AV AVAR P H A+ KI+ YL T+D GI
Sbjct: 1454 KADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADL-------GPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGI 1624
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA) HSP 1 Score: 136 bits (342), Expect = 6.360e-35 Identity = 76/180 (42.22%), Postives = 113/180 (62.78%), Query Frame = 1
Query: 4 ADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKDMGDARYYMGCHITRNRKARELKIEQRLYVESMVEKFDVKKGSD--IPATSGVPTLSKADEPGNPEEKEEMRKFPYREAVGALMWTVTMTRPDSASAVSAVARFCENPGPAHKKAVMKIMQYLLHTKDWGI 537
ADPCV+ + GE E +V ++VDD+L ++ KA + A + +KF++KD+G AR+ +G I + + R L I Q+ Y ES+++KF + P GV L+KADEP E+K +M+ PYR VG+LM+ TRPD + AV+ ++RF ENPG H A +K+++YLL TKD GI
Sbjct: 89 ADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGI 266 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165363.4116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig165363.4116.1 >prot_H-elongata_contig165363.4116.1 ID=prot_H-elongata_contig165363.4116.1|Name=mRNA_H-elongata_contig165363.4116.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp KADPCVFRKVVNGETEVVVAVHVDDILAHTKDKATMDKFAAELGQKFKLKback to top mRNA from alignment at H-elongata_contig165363:5..541- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig165363.4116.1 ID=mRNA_H-elongata_contig165363.4116.1|Name=mRNA_H-elongata_contig165363.4116.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=537bp|location=Sequence derived from alignment at H-elongata_contig165363:5..541- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig165363:5..541- >mRNA_H-elongata_contig165363.4116.1 ID=mRNA_H-elongata_contig165363.4116.1|Name=mRNA_H-elongata_contig165363.4116.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig165363:5..541- (Himanthalia elongata Himel1 dioecious)back to top |