mRNA_H-elongata_contig165344.4114.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: A0A6H5KAW1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW1_9PHAE) HSP 1 Score: 188 bits (478), Expect = 1.480e-57 Identity = 103/187 (55.08%), Postives = 121/187 (64.71%), Query Frame = 1
Query: 1 MSDTLQPDLSGEAHTNAV--RSTERLGSHGSFAPGVKILFGGVAHNVPLETNYDHGEVLFESKTLQPDLSGEAHTNAVRNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFVRPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLF--VSSKSKPDL 549
M+ +PDLSG N R ER G+ GSF GV I+ GG A +VPLE DHG+VLF S +PDLS EA TNAVR ERLG G F G + + GG PR+VPLE + +HGKVLFVS +P+LS EA TN VRP+ERLGSRG FT GVR W GG P DVP+ D G VLF S +S+P L
Sbjct: 19 MTSVHKPDLSGLPAFNVAGGRPDERFGTRGSFTRGVHIMSGGHARDVPLEAEVDHGKVLFVSAIHKPDLSAEARTNAVRPMERLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSL 205
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: D7FZE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE3_ECTSI) HSP 1 Score: 181 bits (460), Expect = 3.500e-51 Identity = 100/187 (53.48%), Postives = 119/187 (63.64%), Query Frame = 1
Query: 1 MSDTLQPDLSGEAHTNAV--RSTERLGSHGSFAPGVKILFGGVAHNVPLETNYDHGEVLFESKTLQPDLSGEAHTNAVRNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFVRPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLF--VSSKSKPDL 549
M+ +PDLSG N R ER G+ GSF GV+I+ GG A +VPLE DHG+VLF S +PDLS EA TNAVR ERLG G F G + + GG PR+VPLE + +HGKVL VS +P+LS EA N RP+ERLGSRG FT GVR W GG P DVP+ D G VLF S +S+P L
Sbjct: 290 MTSVHKPDLSGLPTFNVAGGRPDERFGTRGSFTRGVRIMSGGHARDVPLEAEVDHGKVLFVSAIHKPDLSTEARTNAVRPMERLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLLVSAVHKPDLSAEARINATRPTERLGSRGRFTAGVRRWGGGEPRDVPLPRVRDPGTVLFESASERSRPSL 476
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: D7G1I1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G1I1_ECTSI) HSP 1 Score: 134 bits (337), Expect = 1.420e-35 Identity = 68/126 (53.97%), Postives = 84/126 (66.67%), Query Frame = 1
Query: 178 SKTLQPDLSGEAHTNAV--RNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFVRPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLFVSSKSKPDL 549
+ + DLSG N R ER G G+F GV+ GG R+VP E + +HGKVLFVS +P+LS EA TN VRP+ERLG+RG FTPG R W+GG P DVP++ E DHG+VLFVS+ KPDL
Sbjct: 2 TSVCKSDLSGLPTFNVAGGRPDERFGTRGSFTRGVRIMSGGHTRDVPREAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGTRGRFTPGGRRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDL 127
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: A0A6H5KBU2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU2_9PHAE) HSP 1 Score: 122 bits (306), Expect = 1.410e-31 Identity = 67/124 (54.03%), Postives = 78/124 (62.90%), Query Frame = 1
Query: 190 QPDLSGEAHTNAV--RNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFVRPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLF--VSSKSKPDL 549
+PDLSG N R ER G G+F GV GG R+VPLE + +HGKVLFVS +P+LS EA TN VRP+ERLGSRG FT GVR W GG P DVP+ D G VLF S +S+P L
Sbjct: 6 KPDLSGLPAFNVAGGRPDERFGTRGSFTRGVHIMSGGHARDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSL 129
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: A0A835YKS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS3_9STRA) HSP 1 Score: 110 bits (275), Expect = 1.490e-26 Identity = 70/181 (38.67%), Postives = 94/181 (51.93%), Query Frame = 1
Query: 13 LQPDLSGEAHTNAVRSTERLGSHGSFAPGVKILFGGVAHNVPLETNY-DHGEVLFESKTLQPDLSGEAHTNAVRNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFV--RPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLFVSSKSKPD 546
+ DL G HT ER G + ++A GV + GGV H+VP+ + +HG VL+ S TL PD+ GE ER G+ G ++ P + + + HG VL LQPN++ TN RP+ERLG RGGFTPGV GG DVP+ E HG VL+ S+ +PD
Sbjct: 1 MYKDLDG--HTKPGHPLEREG-YSAWAHGVTVFAGGVPHDVPVPHDQANHGTVLYTSATLAPDMRGELRLKTGAVDERQGVSGAQPHWIR------PAHDAVAPELNHGTVLATFPHLQPNMAYSYRTNIAGGRPTERLGVRGGFTPGVVICAGGAARDVPIAAERHHGTVLYTSAALRPD 172
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: A0A835YLE4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE4_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 6.190e-19 Identity = 71/182 (39.01%), Postives = 88/182 (48.35%), Query Frame = 1
Query: 13 LQPDLSGEAHTNAVRSTERLGSHGSFAPGVKILFGGVAHNVPLETNYD-HGEVLFESKTLQPDLSGEAHTNAVRNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFV--RPSERLGSRGGFTPGVRHWLGGFPHDVPVKTE-TDHGEVLFVSSKSKPD 546
L+PDLS T + ERL F V G H VPL N + HG VLF S TL+PDLS T + ERLG F + + VP ++ + G VL LQPN++ TN R +ERLG RGGFTPGV GG DVPV + G VL+ S+ +PD
Sbjct: 39 LKPDLSELPLTKPGTAGERLARSALFRSRV----GPPIHYVPLSRNNENHGTVLFTSSTLKPDLSEVPLTKPGTDGERLGRSALFRSRARRPLRDVPVDL---AEPNRGTVLCTCPHLQPNMAYSYRTNVAGGRSTERLGVRGGFTPGVVTRAGGPACDVPVAAAPVNRGTVLYTSAALRPD 213
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: A0A6H5KZP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP0_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 2.700e-13 Identity = 54/155 (34.84%), Postives = 67/155 (43.23%), Query Frame = 1
Query: 178 SKTLQPDLSGEAHTNAV--RNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKV---------------------------LFVSETLQPNLSGEASTNFVRPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLF--VSSKSKPDL 549
+ +PDLSG N R R G G+F GV+ GG R VP E + +HG V L T +S T +RP+ERLGSRG FT G+R W GG P DV + D G VLF S +S+P L
Sbjct: 2 TSVYKPDLSGLPTFNVAGGRPDGRFGTRGSFTLGVRIMSGGHARGVPREAEVDHGNVRRAQAGPLRRGPHLRHPPHGAPRNPGPLHAGRTSLGRISPPWPTA-IRPTERLGSRGRFTSGIRGWAGGKPPDVTLPRVRDPGTVLFESASERSRPSL 155 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig165344.4114.1 >prot_H-elongata_contig165344.4114.1 ID=prot_H-elongata_contig165344.4114.1|Name=mRNA_H-elongata_contig165344.4114.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp MVKCCLNQKPSSPTYQVRPTQTQCVTLSAWVYTEPSKRESRPSSGECPVTback to top mRNA from alignment at H-elongata_contig165344:60..609+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig165344.4114.1 ID=mRNA_H-elongata_contig165344.4114.1|Name=mRNA_H-elongata_contig165344.4114.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=550bp|location=Sequence derived from alignment at H-elongata_contig165344:60..609+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig165344:60..609+ >mRNA_H-elongata_contig165344.4114.1 ID=mRNA_H-elongata_contig165344.4114.1|Name=mRNA_H-elongata_contig165344.4114.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig165344:60..609+ (Himanthalia elongata Himel1 dioecious)back to top |