mRNA_H-elongata_contig165344.4114.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165344.4114.1
Unique NamemRNA_H-elongata_contig165344.4114.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: A0A6H5KAW1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAW1_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.480e-57
Identity = 103/187 (55.08%), Postives = 121/187 (64.71%), Query Frame = 1
Query:    1 MSDTLQPDLSGEAHTNAV--RSTERLGSHGSFAPGVKILFGGVAHNVPLETNYDHGEVLFESKTLQPDLSGEAHTNAVRNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFVRPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLF--VSSKSKPDL 549
            M+   +PDLSG    N    R  ER G+ GSF  GV I+ GG A +VPLE   DHG+VLF S   +PDLS EA TNAVR  ERLG  G F  G + + GG PR+VPLE + +HGKVLFVS   +P+LS EA TN VRP+ERLGSRG FT GVR W GG P DVP+    D G VLF   S +S+P L
Sbjct:   19 MTSVHKPDLSGLPAFNVAGGRPDERFGTRGSFTRGVHIMSGGHARDVPLEAEVDHGKVLFVSAIHKPDLSAEARTNAVRPMERLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSL 205          
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: D7FZE3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZE3_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 3.500e-51
Identity = 100/187 (53.48%), Postives = 119/187 (63.64%), Query Frame = 1
Query:    1 MSDTLQPDLSGEAHTNAV--RSTERLGSHGSFAPGVKILFGGVAHNVPLETNYDHGEVLFESKTLQPDLSGEAHTNAVRNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFVRPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLF--VSSKSKPDL 549
            M+   +PDLSG    N    R  ER G+ GSF  GV+I+ GG A +VPLE   DHG+VLF S   +PDLS EA TNAVR  ERLG  G F  G + + GG PR+VPLE + +HGKVL VS   +P+LS EA  N  RP+ERLGSRG FT GVR W GG P DVP+    D G VLF   S +S+P L
Sbjct:  290 MTSVHKPDLSGLPTFNVAGGRPDERFGTRGSFTRGVRIMSGGHARDVPLEAEVDHGKVLFVSAIHKPDLSTEARTNAVRPMERLGARGRFTPGGRRWAGGKPRDVPLEAEVDHGKVLLVSAVHKPDLSAEARINATRPTERLGSRGRFTAGVRRWGGGEPRDVPLPRVRDPGTVLFESASERSRPSL 476          
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: D7G1I1_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7G1I1_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.420e-35
Identity = 68/126 (53.97%), Postives = 84/126 (66.67%), Query Frame = 1
Query:  178 SKTLQPDLSGEAHTNAV--RNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFVRPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLFVSSKSKPDL 549
            +   + DLSG    N    R  ER G  G+F  GV+   GG  R+VP E + +HGKVLFVS   +P+LS EA TN VRP+ERLG+RG FTPG R W+GG P DVP++ E DHG+VLFVS+  KPDL
Sbjct:    2 TSVCKSDLSGLPTFNVAGGRPDERFGTRGSFTRGVRIMSGGHTRDVPREAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGTRGRFTPGGRRWVGGKPRDVPLEAEVDHGKVLFVSAVHKPDL 127          
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: A0A6H5KBU2_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU2_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.410e-31
Identity = 67/124 (54.03%), Postives = 78/124 (62.90%), Query Frame = 1
Query:  190 QPDLSGEAHTNAV--RNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFVRPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLF--VSSKSKPDL 549
            +PDLSG    N    R  ER G  G+F  GV    GG  R+VPLE + +HGKVLFVS   +P+LS EA TN VRP+ERLGSRG FT GVR W GG P DVP+    D G VLF   S +S+P L
Sbjct:    6 KPDLSGLPAFNVAGGRPDERFGTRGSFTRGVHIMSGGHARDVPLEAEVDHGKVLFVSAVHKPDLSAEARTNAVRPTERLGSRGRFTAGVRRWAGGEPRDVPLPRVCDPGTVLFESASERSRPSL 129          
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: A0A835YKS3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS3_9STRA)

HSP 1 Score: 110 bits (275), Expect = 1.490e-26
Identity = 70/181 (38.67%), Postives = 94/181 (51.93%), Query Frame = 1
Query:   13 LQPDLSGEAHTNAVRSTERLGSHGSFAPGVKILFGGVAHNVPLETNY-DHGEVLFESKTLQPDLSGEAHTNAVRNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFV--RPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLFVSSKSKPD 546
            +  DL G  HT      ER G + ++A GV +  GGV H+VP+  +  +HG VL+ S TL PD+ GE         ER G+ G     ++      P +  +  +  HG VL     LQPN++    TN    RP+ERLG RGGFTPGV    GG   DVP+  E  HG VL+ S+  +PD
Sbjct:    1 MYKDLDG--HTKPGHPLEREG-YSAWAHGVTVFAGGVPHDVPVPHDQANHGTVLYTSATLAPDMRGELRLKTGAVDERQGVSGAQPHWIR------PAHDAVAPELNHGTVLATFPHLQPNMAYSYRTNIAGGRPTERLGVRGGFTPGVVICAGGAARDVPIAAERHHGTVLYTSAALRPD 172          
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: A0A835YLE4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE4_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 6.190e-19
Identity = 71/182 (39.01%), Postives = 88/182 (48.35%), Query Frame = 1
Query:   13 LQPDLSGEAHTNAVRSTERLGSHGSFAPGVKILFGGVAHNVPLETNYD-HGEVLFESKTLQPDLSGEAHTNAVRNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKVLFVSETLQPNLSGEASTNFV--RPSERLGSRGGFTPGVRHWLGGFPHDVPVKTE-TDHGEVLFVSSKSKPD 546
            L+PDLS    T    + ERL     F   V    G   H VPL  N + HG VLF S TL+PDLS    T    + ERLG    F +  +     VP ++    +   G VL     LQPN++    TN    R +ERLG RGGFTPGV    GG   DVPV     + G VL+ S+  +PD
Sbjct:   39 LKPDLSELPLTKPGTAGERLARSALFRSRV----GPPIHYVPLSRNNENHGTVLFTSSTLKPDLSEVPLTKPGTDGERLGRSALFRSRARRPLRDVPVDL---AEPNRGTVLCTCPHLQPNMAYSYRTNVAGGRSTERLGVRGGFTPGVVTRAGGPACDVPVAAAPVNRGTVLYTSAALRPD 213          
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Match: A0A6H5KZP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZP0_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.700e-13
Identity = 54/155 (34.84%), Postives = 67/155 (43.23%), Query Frame = 1
Query:  178 SKTLQPDLSGEAHTNAV--RNTERLGLHGTFETGVKTFFGGVPRNVPLETKYEHGKV---------------------------LFVSETLQPNLSGEASTNFVRPSERLGSRGGFTPGVRHWLGGFPHDVPVKTETDHGEVLF--VSSKSKPDL 549
            +   +PDLSG    N    R   R G  G+F  GV+   GG  R VP E + +HG V                           L    T    +S    T  +RP+ERLGSRG FT G+R W GG P DV +    D G VLF   S +S+P L
Sbjct:    2 TSVYKPDLSGLPTFNVAGGRPDGRFGTRGSFTLGVRIMSGGHARGVPREAEVDHGNVRRAQAGPLRRGPHLRHPPHGAPRNPGPLHAGRTSLGRISPPWPTA-IRPTERLGSRGRFTSGIRGWAGGKPPDVTLPRVRDPGTVLFESASERSRPSL 155          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165344.4114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KAW1_9PHAE1.480e-5755.08Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FZE3_ECTSI3.500e-5153.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1I1_ECTSI1.420e-3553.97Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KBU2_9PHAE1.410e-3154.03Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A835YKS3_9STRA1.490e-2638.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YLE4_9STRA6.190e-1939.01Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A6H5KZP0_9PHAE2.700e-1334.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165344contigH-elongata_contig165344:60..609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size393
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.577506-UTR-H-elongata_contig165344:59..2161622929967.577506-UTR-H-elongata_contig165344:59..216Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165344 60..216 +
1691679227.785269-UTR-H-elongata_contig165344:59..2161691679227.785269-UTR-H-elongata_contig165344:59..216Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig165344 60..216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.5997436-CDS-H-elongata_contig165344:216..6091622929967.5997436-CDS-H-elongata_contig165344:216..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165344 217..609 +
1691679227.797193-CDS-H-elongata_contig165344:216..6091691679227.797193-CDS-H-elongata_contig165344:216..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165344 217..609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165344.4114.1prot_H-elongata_contig165344.4114.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165344 217..609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165344.4114.1

>prot_H-elongata_contig165344.4114.1 ID=prot_H-elongata_contig165344.4114.1|Name=mRNA_H-elongata_contig165344.4114.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=131bp
MVKCCLNQKPSSPTYQVRPTQTQCVTLSAWVYTEPSKRESRPSSGECPVT
FRSRPSTNMVKCCLYQKPSSPTCRVRPARILYAPPSAWDLAVDSRQVYAT
GWEASLTTFRSKQKPTMARCFSCRRRANPTC
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mRNA from alignment at H-elongata_contig165344:60..609+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165344.4114.1 ID=mRNA_H-elongata_contig165344.4114.1|Name=mRNA_H-elongata_contig165344.4114.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=550bp|location=Sequence derived from alignment at H-elongata_contig165344:60..609+ (Himanthalia elongata Himel1 dioecious)
ATGTCTGATACGCTTCAGCCCGACCTATCGGGTGAAGCCCACACTAACGC CGTGCGCAGCACTGAACGCCTTGGTTCACACGGAAGCTTCGCACCGGGGG TGAAAATATTATTCGGGGGGGTGGCCCATAACGTTCCGCTCGAGACCAAC TACGACCATGGTGAAGTGCTGTTTGAATCAAAAACCCTCCAGCCCGACCT ATCAGGTGAGGCCCACACAAACGCAGTGCGTAACACTGAGCGCCTGGGTT TACACGGAACCTTCGAAACGGGAGTCAAGACCTTCTTCGGGGGAGTGCCC CGTAACGTTCCGCTCGAGACCAAGTACGAACATGGTAAAGTGCTGTTTGT ATCAGAAACCCTCCAGCCCAACCTGTCGGGTGAGGCCAGCACGAATTTTG TACGCCCCTCCGAGCGCTTGGGATCTCGCGGTGGATTCACGCCAGGTGTA CGCCACTGGTTGGGAGGCTTCCCTCACGACGTTCCGGTCAAAACAGAAAC CGACCATGGCGAGGTGCTTTTCGTGTCGTCGAAGAGCAAACCCGACCTGT
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Coding sequence (CDS) from alignment at H-elongata_contig165344:60..609+

>mRNA_H-elongata_contig165344.4114.1 ID=mRNA_H-elongata_contig165344.4114.1|Name=mRNA_H-elongata_contig165344.4114.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=786bp|location=Sequence derived from alignment at H-elongata_contig165344:60..609+ (Himanthalia elongata Himel1 dioecious)
ATGGTGAAGTGCTGTTTGAATCAAAAACCCTCCAGCCCGACCTATCAGGT
GAGGCCCACACAAACGCAGTGCGTAACACTGAGCGCCTGGGTTTACACGG
AACCTTCGAAACGGGAGTCAAGACCTTCTTCGGGGGAGTGCCCCGTAACG
TTCCGCTCGAGACCAAGTACGAACATGGTAAAGTGCTGTTTGTATCAGAA
ACCCTCCAGCCCAACCTGTCGGGTGAGGCCAGCACGAATTTTGTACGCCC
CTCCGAGCGCTTGGGATCTCGCGGTGGATTCACGCCAGGTGTACGCCACT
GGTTGGGAGGCTTCCCTCACGACGTTCCGGTCAAAACAGAAACCGACCAT
GGCGAGGTGCTTTTCGTGTCGTCGAAGAGCAAACCCGACCTGTATGGTGA
AGTGCTGTTTGAATCAAAAACCCTCCAGCCCGACCTATCAGGTGAGGCCC
ACACAAACGCAGTGCGTAACACTGAGCGCCTGGGTTTACACGGAACCTTC
GAAACGGGAGTCAAGACCTTCTTCGGGGGAGTGCCCCGTAACGTTCCGCT
CGAGACCAAGTACGAACATGGTAAAGTGCTGTTTGTATCAGAAACCCTCC
AGCCCAACCTGTCGGGTGAGGCCAGCACGAATTTTGTACGCCCCTCCGAG
CGCTTGGGATCTCGCGGTGGATTCACGCCAGGTGTACGCCACTGGTTGGG
AGGCTTCCCTCACGACGTTCCGGTCAAAACAGAAACCGACCATGGCGAGG
TGCTTTTCGTGTCGTCGAAGAGCAAACCCGACCTGT
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