mRNA_H-elongata_contig165337.4112.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig165337.4112.1
Unique NamemRNA_H-elongata_contig165337.4112.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig165337.4112.1 vs. uniprot
Match: D8LIZ2_ECTSI (Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ2_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 3.350e-41
Identity = 80/109 (73.39%), Postives = 89/109 (81.65%), Query Frame = 1 
Query:    1 LQH-KAAGFESATPDDGPWRFTLDMPSYLPSMQHLRKREIREKMYRAFTTRASSLSPGEGGTSLDNEPYIARVLRLKKQMAGLLGYSTYAEVSLASK-AGVVAGCRDLT 321
            L+H KAAG E ATP++GPWR TLDMPSYLP MQHL+ RE+REK+YRAFTTRASS+S GE G SLDNEP+IARVL LKK MA LLGY +YAEVSLASK A  V    DLT
Sbjct:  239 LEHSKAAGEEGATPEEGPWRLTLDMPSYLPCMQHLKNREVREKVYRAFTTRASSVSVGEDGKSLDNEPHIARVLELKKTMASLLGYGSYAEVSLASKMADSVEAVDDLT 347
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BLAST of mRNA_H-elongata_contig165337.4112.1 vs. uniprot
Match: UPI001682D4C3 (M3 family metallopeptidase n=1 Tax=unclassified Leptolyngbya TaxID=2650499 RepID=UPI001682D4C3)

HSP 1 Score: 117 bits (293), Expect = 2.150e-28
Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:   10 KAAGFESATPDDGPWRFTLDMPSYLPSMQHLRKREIREKMYRAFTTRASSLSPGEGGTSLDNEPYIARVLRLKKQMAGLLGYSTYAEVSLASK 288
            + AG + ATP+ GPWRFTLDMPS+LP MQH R+R++REKMYRA  TRA+S   GE     DN+P I R+L L+K+MAGLLGY +YAE+SLASK
Sbjct:  209 RVAGADDATPEHGPWRFTLDMPSFLPFMQHSRRRDLREKMYRAHVTRAAS---GE----YDNQPLIERILTLRKEMAGLLGYDSYAELSLASK 294
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BLAST of mRNA_H-elongata_contig165337.4112.1 vs. uniprot
Match: A0A6M8BET0_9CYAN (Oligopeptidase A n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A6M8BET0_9CYAN)

HSP 1 Score: 115 bits (288), Expect = 1.020e-27
Identity = 58/93 (62.37%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:   10 KAAGFESATPDDGPWRFTLDMPSYLPSMQHLRKREIREKMYRAFTTRASSLSPGEGGTSLDNEPYIARVLRLKKQMAGLLGYSTYAEVSLASK 288
            +AAG E+ATP+ GPWR TLDMPSYLP MQH R+R++RE +YRA+ TRASS   GE     DN+P I R+L L+K+MAG+LG+ +YAE+SLASK
Sbjct:  206 RAAGAEAATPEAGPWRITLDMPSYLPFMQHSRRRDLRETLYRAYITRASS---GEH----DNQPIIERILTLRKEMAGILGFGSYAELSLASK 291
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BLAST of mRNA_H-elongata_contig165337.4112.1 vs. uniprot
Match: UPI00145CC8FE (M3 family metallopeptidase n=1 Tax=Brasilonema sp. UFV-L1 TaxID=2234130 RepID=UPI00145CC8FE)

HSP 1 Score: 112 bits (279), Expect = 1.700e-26
Identity = 57/93 (61.29%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:   10 KAAGFESATPDDGPWRFTLDMPSYLPSMQHLRKREIREKMYRAFTTRASSLSPGEGGTSLDNEPYIARVLRLKKQMAGLLGYSTYAEVSLASK 288
            +AAG E+ATP++GPWR TLD+PSY P MQH  +R++REKMYRAF +RASS   GE    LDN P I R+L L++++A LLG+ TYAE+SLASK
Sbjct:  209 RAAGEENATPENGPWRITLDVPSYAPFMQHSTRRDLREKMYRAFISRASS---GE----LDNNPLIERILELRQELAELLGFKTYAELSLASK 294
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BLAST of mRNA_H-elongata_contig165337.4112.1 vs. uniprot
Match: UPI000B49D010 (M3 family metallopeptidase n=1 Tax=Calothrix rhizosoleniae TaxID=888997 RepID=UPI000B49D010)

HSP 1 Score: 110 bits (274), Expect = 8.060e-26
Identity = 54/90 (60.00%), Postives = 71/90 (78.89%), Query Frame = 1 
Query:   19 GFESATPDDGPWRFTLDMPSYLPSMQHLRKREIREKMYRAFTTRASSLSPGEGGTSLDNEPYIARVLRLKKQMAGLLGYSTYAEVSLASK 288
            G E+ATP++GPWR TLD PSY+P MQH  +R++REK+Y+AF +RA++   GE    LDN P I R+L L+++MAGLLGY TYAE+SLASK
Sbjct:  212 GAENATPENGPWRITLDYPSYVPFMQHSSRRDLREKLYKAFISRAAA---GE----LDNSPLIERILSLRQEMAGLLGYQTYAEISLASK 294
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BLAST of mRNA_H-elongata_contig165337.4112.1 vs. uniprot
Match: A0A7S2Y2V4_9STRA (Oligopeptidase A n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y2V4_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.540e-25
Identity = 56/104 (53.85%), Postives = 73/104 (70.19%), Query Frame = 1 
Query:    4 QHKAAGFESATPDDGPWRFTLDMPSYLPSMQHLRKREIREKMYRAFTTRASSLSPGEGGTSLDNEPYIARVLRLKKQMAGLLGYSTYAEVSLASKAGVVAGCRD 315
            Q  A G E ATP++GPW  TLD+PSY+P+MQHL+ R+IREK+YRAF TRASS   GE     DNEP I  +L+L+K+ + +LG+  +AE+SLASK     G  D
Sbjct:  365 QAAAKGNEGATPEEGPWLITLDIPSYMPAMQHLKSRQIREKLYRAFITRASS---GE----TDNEPIIQEILKLRKEKSKMLGFENFAEMSLASKMAPNVGAVD 461
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BLAST of mRNA_H-elongata_contig165337.4112.1 vs. uniprot
Match: A0A0M4SI72_9NOSO (Oligopeptidase A n=16 Tax=Nostocales TaxID=1161 RepID=A0A0M4SI72_9NOSO)

HSP 1 Score: 108 bits (269), Expect = 3.830e-25
Identity = 54/93 (58.06%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:   10 KAAGFESATPDDGPWRFTLDMPSYLPSMQHLRKREIREKMYRAFTTRASSLSPGEGGTSLDNEPYIARVLRLKKQMAGLLGYSTYAEVSLASK 288
            +AAG E+ATP++GPWR TLD PSY P MQH  +R++RE++Y+A+ TRASS   GE    LDN P IAR+L L++++A LLGY  +AE+SLASK
Sbjct:  208 RAAGEENATPENGPWRITLDFPSYGPFMQHSTRRDLREQLYKAYVTRASS---GE----LDNNPLIARILELRQELANLLGYKNFAELSLASK 293
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BLAST of mRNA_H-elongata_contig165337.4112.1 vs. uniprot
Match: A0A7S4FQW2_9EUGL (Oligopeptidase A n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FQW2_9EUGL)

HSP 1 Score: 108 bits (269), Expect = 3.930e-25
Identity = 60/105 (57.14%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:   10 KAAGFESATPDDGPWRFTLDMPSYLPSMQHLRKREIREKMYRAFTTRASSLSPGEGGTSLDNEPYIARVLRLKKQMAGLLGYSTYAEVSLASK-AGVVAGCRDLT 321
            KA G ESAT + GPW  TLD+PSYLP+MQHL+ R++RE++YRA+ TRAS+     G T  DN P I R L+LKKQ A +LGY T+AE SLASK AG V    +L+
Sbjct:  398 KAKGHESATAEAGPWVLTLDIPSYLPAMQHLKNRDLREQLYRAYVTRASA-----GDT--DNSPIITRTLQLKKQRAQMLGYKTHAEYSLASKMAGSVEEVDELS 495
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BLAST of mRNA_H-elongata_contig165337.4112.1 vs. uniprot
Match: A0A836CFP0_9STRA (Oligopeptidase A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFP0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.140e-25
Identity = 56/92 (60.87%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:   13 AAGFESATPDDGPWRFTLDMPSYLPSMQHLRKREIREKMYRAFTTRASSLSPGEGGTSLDNEPYIARVLRLKKQMAGLLGYSTYAEVSLASK 288
            AAG E ATP+ GPWR TLDMP+YLP MQH +   +REK+YRA+  RAS+     G +S  NEP I R+L LK+++A LLG+STYAEVSLASK
Sbjct:  185 AAGEEGATPETGPWRVTLDMPAYLPVMQHAKSSALREKLYRAYIARAST-----GDSS--NEPIIKRILTLKRELASLLGFSTYAEVSLASK 269
[Close]
BLAST of mRNA_H-elongata_contig165337.4112.1 vs. uniprot
Match: UPI0019F46826 (M3 family metallopeptidase n=1 Tax=Chroococcidiopsidales cyanobacterium LEGE 13417 TaxID=1828829 RepID=UPI0019F46826)

HSP 1 Score: 107 bits (267), Expect = 5.850e-25
Identity = 53/93 (56.99%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:   10 KAAGFESATPDDGPWRFTLDMPSYLPSMQHLRKREIREKMYRAFTTRASSLSPGEGGTSLDNEPYIARVLRLKKQMAGLLGYSTYAEVSLASK 288
            +AAG E ATP+ GPWR TLD PSYLP MQH ++R++REK+YRAF +RASS         LDN P I ++L+L+++ A LLG+++YAE+SLASK
Sbjct:   64 RAAGEEKATPEIGPWRVTLDFPSYLPFMQHGKRRDLREKLYRAFISRASS-------GDLDNTPLIEKILQLRREKANLLGFNSYAELSLASK 149
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig165337.4112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIZ2_ECTSI3.350e-4173.39Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus sil... [more]
UPI001682D4C32.150e-2863.44M3 family metallopeptidase n=1 Tax=unclassified Le... [more]
A0A6M8BET0_9CYAN1.020e-2762.37Oligopeptidase A n=3 Tax=Cyanobacteria TaxID=1117 ... [more]
UPI00145CC8FE1.700e-2661.29M3 family metallopeptidase n=1 Tax=Brasilonema sp.... [more]
UPI000B49D0108.060e-2660.00M3 family metallopeptidase n=1 Tax=Calothrix rhizo... [more]
A0A7S2Y2V4_9STRA1.540e-2553.85Oligopeptidase A n=1 Tax=Fibrocapsa japonica TaxID... [more]
A0A0M4SI72_9NOSO3.830e-2558.06Oligopeptidase A n=16 Tax=Nostocales TaxID=1161 Re... [more]
A0A7S4FQW2_9EUGL3.930e-2557.14Oligopeptidase A n=1 Tax=Eutreptiella gymnastica T... [more]
A0A836CFP0_9STRA5.140e-2560.87Oligopeptidase A n=1 Tax=Tribonema minus TaxID=303... [more]
UPI0019F468265.850e-2556.99M3 family metallopeptidase n=1 Tax=Chroococcidiops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig165337contigH-elongata_contig165337:787..1110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.5
Seed ortholog evalue2.9e-35
Seed eggNOG ortholog2880.D8LIZ2
Preferred namePRD1
KEGG koko:K01392,ko:K01405,ko:K01414,ko:K13726
KEGG Pathwayko04614,ko05143,map04614,map05143
GOsGO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005773,GO:0005794,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009987,GO:0012505,GO:0016787,GO:0019538,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070011,GO:0070013,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.metalloendopeptidase activity
EggNOG OGsCOG0339@1,KOG2089@2759
EC3.4.24.15,3.4.24.37,3.4.24.70
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size324
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.4629154-CDS-H-elongata_contig165337:786..11101622929967.4629154-CDS-H-elongata_contig165337:786..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165337 787..1110 -
1691679227.7383811-CDS-H-elongata_contig165337:786..11101691679227.7383811-CDS-H-elongata_contig165337:786..1110Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig165337 787..1110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig165337.4112.1prot_H-elongata_contig165337.4112.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig165337 787..1110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig165337.4112.1

>prot_H-elongata_contig165337.4112.1 ID=prot_H-elongata_contig165337.4112.1|Name=mRNA_H-elongata_contig165337.4112.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
LQHKAAGFESATPDDGPWRFTLDMPSYLPSMQHLRKREIREKMYRAFTTR
ASSLSPGEGGTSLDNEPYIARVLRLKKQMAGLLGYSTYAEVSLASKAGVV
AGCRDLT*
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mRNA from alignment at H-elongata_contig165337:787..1110-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig165337.4112.1 ID=mRNA_H-elongata_contig165337.4112.1|Name=mRNA_H-elongata_contig165337.4112.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=324bp|location=Sequence derived from alignment at H-elongata_contig165337:787..1110- (Himanthalia elongata Himel1 dioecious)
CTGCAACATAAGGCTGCTGGCTTTGAGAGTGCAACTCCCGACGATGGACC
CTGGCGTTTCACCCTGGACATGCCGAGCTATCTTCCTAGCATGCAGCACC
TTAGGAAGCGCGAAATACGAGAGAAGATGTACCGGGCCTTCACGACGAGG
GCCAGCAGCTTGAGTCCCGGAGAGGGTGGCACTTCTCTGGACAACGAGCC
GTACATCGCGAGAGTCTTGCGGCTGAAGAAGCAGATGGCCGGGCTGCTGG
GTTATAGCACGTACGCCGAGGTTTCCTTGGCGTCGAAGGCGGGTGTGGTG
GCCGGCTGCCGTGACTTAACTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig165337:787..1110-

>mRNA_H-elongata_contig165337.4112.1 ID=mRNA_H-elongata_contig165337.4112.1|Name=mRNA_H-elongata_contig165337.4112.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig165337:787..1110- (Himanthalia elongata Himel1 dioecious)
CTGCAACATAAGGCTGCTGGCTTTGAGAGTGCAACTCCCGACGATGGACC
CTGGCGTTTCACCCTGGACATGCCGAGCTATCTTCCTAGCATGCAGCACC
TTAGGAAGCGCGAAATACGAGAGAAGATGTACCGGGCCTTCACGACGAGG
GCCAGCAGCTTGAGTCCCGGAGAGGGTGGCACTTCTCTGGACAACGAGCC
GTACATCGCGAGAGTCTTGCGGCTGAAGAAGCAGATGGCCGGGCTGCTGG
GTTATAGCACGTACGCCGAGGTTTCCTTGGCGTCGAAGGCGGGTGTGGTG
GCCGGCTGCCGTGACTTAACTTGACTGCAACATAAGGCTGCTGGCTTTGA
GAGTGCAACTCCCGACGATGGACCCTGGCGTTTCACCCTGGACATGCCGA
GCTATCTTCCTAGCATGCAGCACCTTAGGAAGCGCGAAATACGAGAGAAG
ATGTACCGGGCCTTCACGACGAGGGCCAGCAGCTTGAGTCCCGGAGAGGG
TGGCACTTCTCTGGACAACGAGCCGTACATCGCGAGAGTCTTGCGGCTGA
AGAAGCAGATGGCCGGGCTGCTGGGTTATAGCACGTACGCCGAGGTTTCC
TTGGCGTCGAAGGCGGGTGTGGTGGCCGGCTGCCGTGACTTAACTTGA
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