mRNA_H-elongata_contig16533.4111.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16533.4111.1
Unique NamemRNA_H-elongata_contig16533.4111.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: D8LJ08_ECTSI (Carotenoid oxygenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ08_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 8.110e-121
Identity = 173/262 (66.03%), Postives = 203/262 (77.48%), Query Frame = 1
Query:   13 RNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQNRFVDTKCWDSGAPEGQGSAGTPRAWTPRPGGWLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEEDLGGIQAFYSAHPTADPSTGETFGIATGGKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAVTVLVCQ 798
            RN +G+R YGHWFDGDG ISK+VFKDGRVYAQNRFV T  WD  APEG+ +AGT R WTPRPGGW KNV +  GN  NT+VM+ GGKLYAL E GKP EIDPVTLETL E DLGGIQAFYSAHPT D  TGETF I  GG  GALEIT++SPDG L KS  +TPP    WHD+ +TDE+VVAV+SPF A+   I  +++GF  +G AF+W++ +KSEA FFSRETLELV RVELP A SSYH++N FQEE KG  V+V++ +
Sbjct:  113 RNWEGERMYGHWFDGDGMISKVVFKDGRVYAQNRFVSTDSWDPNAPEGKRAAGTRRPWTPRPGGWRKNVLKQTGNLANTSVMVKGGKLYALYEGGKPTEIDPVTLETLGERDLGGIQAFYSAHPTTDRDTGETFNIGIGGAKGALEITKLSPDGVLQKSTTYTPPASLFWHDNTITDEFVVAVSSPFAASLKSIFASMLGFGQLGDAFRWNDNMKSEAFFFSRETLELVKRVELPGAPSSYHIVNGFQEEGKGSNVSVIIAK 374          
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A1X9NLA8_9GAMM (Dioxygenase n=1 Tax=Oceanicoccus sagamiensis TaxID=716816 RepID=A0A1X9NLA8_9GAMM)

HSP 1 Score: 144 bits (364), Expect = 1.620e-36
Identity = 94/256 (36.72%), Postives = 142/256 (55.47%), Query Frame = 1
Query:   10 GRNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQNRFVDT-KCWDSGAPEGQGSAGTPRAWTPRPGGWLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEEDLGGIQAF---YSAHPTADPSTGETFGIATGG-KNGALEITRMSPDGTL-DKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQE 759
            GRN+ G++ +GHWFDGDG I+ + FK G+V+ +NR+V T K     A +     G     T  PGG+LKN+FR PGN  NTNV++ GGKL AL E GKP E+DP TL+T+ E +  G+ +    +SAH   DP TG  +     G     L   +++P+G + DK + +     ++ HD A+T  + V V  P  A      K L GF++I  + ++D   K++ +     TL ++   E  D+   +HL NA ++
Sbjct:   58 GRNKIGEQQFGHWFDGDGMINAVTFKAGQVHFKNRYVRTPKYMHETAQQRILYRGV---GTQIPGGFLKNIFRTPGNAANTNVILHGGKLLALWEGGKPYELDPATLQTVGEYNFDGMLSTGQPFSAHSRHDPRTGFLYNFGVFGIPKPKLHFYKINPEGEMVDKKSHYVGD-YSMCHDFAITKNHAVFVLCP--AFMRSPFKFLFGFNSIMQSIEFDPSEKTKVVVIDLNTLHIIREFEF-DSFFGFHLGNAHEQ 306          
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A812TMX6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812TMX6_9DINO)

HSP 1 Score: 145 bits (366), Expect = 6.340e-36
Identity = 105/279 (37.63%), Postives = 141/279 (50.54%), Query Frame = 1
Query:    1 SGGGRNRDGDRAYGHWFDGDGHISKIVF--KDGRVYAQNRFVDTKCWDSGA-PE-------GQGSAGTPRAWTPRPGG-WLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEE-------DLGGIQAFYSAHPTADPSTGETFGIATG-GKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAV 780
            +G GR R G+  YGHWFDGDG ++ +    K       +RFV T  +++   PE       G G A    AWTP   G  L N+FR+P NP NTNV+  G +L ALCE G P  +DP TLETL +E          G+Q F+SAHP  DP +GE F I    G   +LE+ + S D  L +        I   HD A+T EYVV +  P+  +   +  +L     +G  F+W E   +  L   R  L  V    L  AVS YH +NA+ +++ G AV
Sbjct:  187 NGPGRIRIGESQYGHWFDGDGFVTALTVDGKQQEAAFTSRFVKTNRFEAQQKPEAFFKTERGSGMA-LMGAWTPSANGDLLSNIFRLPTNPANTNVLWWGDRLLALCEGGTPYALDPGTLETLGQELFRHPSLQQSGVQ-FFSAHPKQDPESGELFNIGLKIGLEPSLEVYKCSADRLLLERTGIPLADITFVHDFAITREYVVLIIPPWSCSTSGLATSLWK-GALGQFFEWKEDAGTRLLVLRRSDLSTVFDKSLKPAVSLYHTVNAY-DDDAGAAV 461          
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A7S3Z609_9EUKA (Hypothetical protein n=3 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z609_9EUKA)

HSP 1 Score: 144 bits (362), Expect = 8.700e-36
Identity = 99/280 (35.36%), Postives = 145/280 (51.79%), Query Frame = 1
Query:    1 SGGGRNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQN--RFVDTKCWD--SGAPEGQG--SAGTPRAWTPRPGGWLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEEDLGGIQ--AFYSAHP-----TADPSTGETF---GIATGGKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAVTVLV 792
            +G GR R G   YGHWFDGDG +S++     R  A    R+V T  +    GAP+  G  S G   AWT R GG L N+ R P NP NT+ +   GKL ALCE G P+E+DP +LET+ E  +  +   AF+SAHP     T D   G+T    G+  G     L + R +    +  S       ++  HD ALT+ Y V   +P+  +   +L+ L+G   +G+ +KW    K+  + F +ETLE++     P A++  H+IN +  +E    V +L+
Sbjct:  126 NGAGRIRVGSNQYGHWFDGDGFVSRLSLDPTRNQASLTCRYVRTDRYQRQEGAPDEAGFRSRG---AWTQREGGALGNMGRSPTNPANTSPLSWNGKLLALCEGGPPIELDPESLETIGEYRMENLPKGAFFSAHPKEDHFTTDKGQGKTIFNNGLVIGPPM-TLRLLRATEKEGVTNSRTLPMSALSFVHDFALTERYGVIFLNPYTVSYQDLLQGLVGTKALGMLYKWRPEDKTRIVVFDKETLEVIRDFRAP-AMTFDHVINGYDLDEDRIRVQLLL 400          
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A1Q9D885_SYMMI (Apocarotenoid-15,15'-oxygenase n=3 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9D885_SYMMI)

HSP 1 Score: 136 bits (343), Expect = 1.310e-33
Identity = 98/274 (35.77%), Postives = 139/274 (50.73%), Query Frame = 1
Query:    1 SGGGRNRDGDRAYGHWFDGDGHISKIVFKDGR---VYAQNRFVDTKCWD----SG----APEGQGSAGTPRAWTPRPGG-WLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEE-------DLGGIQAFYSAHPTADPSTGETFGIATG-GKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEE 762
            +G GR R G+  Y HWFDGDG ++ +   DGR       +RFV T+ ++    SG       G G A    AWTP   G +L NVFR+P NP NTNV+    +L ALCE G P  +DP  LETL EE          G+Q F+SAHP  DP +GE F I    G    LE+ + S + +L K  +     +   HD A+T ++V+ +  P+  +   + K+L     +   F+W E   +  +   R  L +V    L  AVS YH +NA+ ++
Sbjct:   65 NGPGRIRIGESKYDHWFDGDGFVTSLSV-DGRNQEAAFTSRFVKTQRYEVQQKSGELVRTERGSGMASM-GAWTPASNGDFLSNVFRLPTNPANTNVLWWDDRLLALCEGGIPYALDPGNLETLGEELFRDPPLTQSGVQ-FFSAHPKRDPDSGELFNIGLKIGLEPTLEVYKCSANRSLMKRTVLALTDLAFVHDFAITRKHVILIIPPWSCSTTGLAKSLWK-GAMAQFFEWKEDAGTRLIVLKRSDLSVVFDSTLQPAVSLYHTVNAYDDD 334          
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A812P1W5_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812P1W5_SYMPI)

HSP 1 Score: 137 bits (345), Expect = 5.210e-33
Identity = 91/275 (33.09%), Postives = 138/275 (50.18%), Query Frame = 1
Query:    1 SGGGRNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQ--NRFVDTKCWD----------SGAPEGQGSAGTPRAWTPRPGG-WLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEE-------DLGGIQAFYSAHPTADPSTGETFGIATG-GKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEE 762
            +G GR R GD  YGHWFDGDG ++ +     +  A   +RF+ T+ ++          + A  G    G   AWTP   G  L N+FR+P NP NTN++    +L ALCE G P  +DP TLET+  E          G+Q F+SAHP  DP +G+ F +    G   ALE+ + S D  L+         +   HD A+T ++VV +  P+  +   + K+L     +G  F+W + + +  +   R  L +V    L  A+S YH +NA+ ++
Sbjct:  119 NGPGRIRVGDSQYGHWFDGDGFVTALALDGSQQEAAFTSRFIRTQRFEVQQKPDALFKTKAGSGMALMG---AWTPAANGDLLANIFRLPTNPANTNILQWDDRLLALCEGGLPYALDPGTLETMGPELFRDPSLSQSGVQ-FFSAHPKRDPESGDLFNVGLKIGLQPALEVYKCSADRVLEMRTDIHLADLAFVHDFAITRKHVVLIIPPWCCSTTGLAKSLWQ-GALGRFFEWKDSVGTRLIVLQRSDLSVVFDQTLMPAISLYHTVNAYDDD 388          
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A7S4K0C9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K0C9_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.510e-32
Identity = 97/313 (30.99%), Postives = 143/313 (45.69%), Query Frame = 1
Query:    1 SGGGRNRDGDRAYGHWFDGDGHISKIVFKD--------GRVYAQNRFVDTK--CWDSGAPEG---QGSAGTPRAWTPRP------------GGWLKNVFRMPGNPVNTNVM------------IMGGKLYALCEAGKPVEIDPVTLETLQEE-------DLGG--IQAFYSAHPTADPSTGETFG----IATGGKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAVTVL 789
            +G GR R G R YGHWFDGDG+++ +            GR     RF D +      G  EG   +   G      P P            G W +N+FR+P NP NT  M            +M  +LYALCE G P+++DP TL+ + +E        +GG  +Q+F+SAH +  P TG+ +     I  G     + + R+S DG L++  L   P     HD+ L+   +V V  P++     IL  + G S +   ++WD          SR  L L   +ELP+ +S YHL++A  E  +    T+L
Sbjct:  136 NGPGRIRIGARQYGHWFDGDGYVTLLSLDGRANRARFAGRYVRSKRFRDQERLMAQLGGVEGITPKDGDGKDEPNDPPPLAFTGAWTLGGRGKWYENIFRIPTNPANTATMWLPPLRKGGEEQLMPPRLYALCEGGNPIQLDPFTLDVVGDEAAFTSTVGVGGERVQSFFSAHFSRCPITGDIYNHGYVIRPGPLGKVINMMRLSRDGVLERQVLSEMPFDTFTHDAVLSVSCIVYVVQPYLMPEEAILSTIAGQSPLASNYQWDSKTPCAIHVHSRSDLRLKWTIELPETMSMYHLVDAHDERAEDGDSTIL 448          
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A8J5XI00_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XI00_DIALT)

HSP 1 Score: 134 bits (336), Expect = 2.330e-32
Identity = 93/275 (33.82%), Postives = 143/275 (52.00%), Query Frame = 1
Query:    1 SGGGRNRDGDRAYGHWFDGDGHISKIVFKDGRV-YAQNRFVDTKCWDSGAPEGQGSAGTPR----AWTPR-PGGWLKNVFRMPGNPVNTNVMIM--GGKLYALCEAGKPVEIDPVTLETLQEE---------DLGGIQ-AFYSAHPTADPSTGETFGIATG-GKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEK 768
            +G GR R G + Y HWFDGDG ++++     R   +  RFV T  + +     QG          AWTPR  GG L N  R+P NP NTNV  +   G+LYALCE G+P+E+DP+TLET   E          L G+    + AH   DP+ G  +      G +  L++ R+SPDG +  S  F   ++ ++HD +++  +++   +P+  +  R+L AL+G    G  F W+   +S    + + TL+ V  +  P   S YH +NAF++ E+
Sbjct:   65 NGAGRIRVGTQLYSHWFDGDGFVTRLELDGSRTALSSGRFVRTPRFLA-----QGDTTDTMMVRGAWTPRGDGGVLANCLRLPSNPANTNVARLPPDGRLYALCEGGRPLELDPLTLETTGGEYDARGALRSPLPGLPPTTFGAHMRVDPTDGTIYNFGLDYGLSLKLKLLRISPDGAVS-SRDFGLQSMPLYHDLSISGNFLILTRTPYEISTARVLGALVGSG--GSMFAWNADAQSHVDVYDKRTLQQVASIASPP-FSCYHHVNAFEDPER 330          
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: A0A7S2XA76_9EUKA (Hypothetical protein n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XA76_9EUKA)

HSP 1 Score: 133 bits (334), Expect = 4.230e-32
Identity = 93/280 (33.21%), Postives = 144/280 (51.43%), Query Frame = 1
Query:    1 SGGGRNRDGDRAYGHWFDGDGHISKIVFK--DGRVYAQNRFVDTKCWD--SGAPEGQG--SAGTPRAWTPRPGGWLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEEDLGGIQ--AFYSAHP-----TADPSTGETF---GIATGGKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAVTVLV 792
            +G GR R G+  YGHWFDGDG +S++     + +     R+V T  +     AP+  G  S G   AWT R GG + N+ R P NP NT       KL ALCE G P+E+DP +LETL E  +  +   AF+SAHP       D   G+T    G+  G     L I R +    +      +   ++  HD ALT+ Y V   +P+  +   +L+ L+G   +G+ +KW    K+  + F ++TLE+V    +P A++  H+INA+  +++   V +++
Sbjct:   69 NGAGRIRIGNNRYGHWFDGDGFVSRLHLDATNNQASLTGRYVRTDRYQRQQEAPDDAGFRSRG---AWTQREGGAVGNMGRSPTNPANTAPFSWNQKLLALCEGGPPMELDPESLETLGEYRMANLPKGAFFSAHPKVDHFATDEGQGKTIFNNGLVIGPPM-QLRIFRATEKEGVTNCRTLSMSALSFVHDFALTERYGVIFLNPYTVSYQDLLQGLVGTKALGMLYKWRPEDKTRVVVFDKDTLEIVRDFRVP-AMTYDHVINAYDLDKERIRVQLML 343          
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Match: UPI001FF50FBD (carotenoid oxygenase family protein n=1 Tax=Gordonia alkaliphila TaxID=1053547 RepID=UPI001FF50FBD)

HSP 1 Score: 128 bits (322), Expect = 1.280e-30
Identity = 92/266 (34.59%), Postives = 131/266 (49.25%), Query Frame = 1
Query:   10 GRNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQNRFVDTKCWDSGAPEGQGSAGTPRAWTPRPGGWLKNVFRMPGNPVNTNVMIMGGKLYALCEAGKPVEIDPVTLETLQEEDLGG---IQAFYSAHPTADPSTGE--TFGIATGGKNGALEITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILKALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINAFQEEEKGDAVTVLV 792
            GR   G    GH FDGDG +S+    D  +  +NR+V T+ ++  + +  G        T RPGG   N+FRMP N  NTNV+   G L++L E G+P  +DP TL TL  ED  G   +   +SAHP  D  TGE   FGI    +   +   R    GTL + A F     +  HD A+T+ Y+V +  P V   GR + AL+G  +I     ++  L +      R+  +   R+   DA+  +H  NA+ EE  GD V  +V
Sbjct:   44 GRLEIGGHRLGHIFDGDGMVSRFAIDDDGIGFRNRYVRTRHFNKASQDWIGRG----IGTLRPGGLAANIFRMPANVSNTNVVAHAGGLFSLWEGGRPYRLDPETLATLGREDFDGALKLLGAFSAHPKIDARTGEMFNFGIEVFPRP-MIRCYRRDRSGTLTQLATFPVSRPSFCHDFAITERYLVFLVDPIVV--GRPISALLGLDSIDNCLTFNADLGTRVALIPRDGGKA--RILETDALFHFHANNAY-EEPGGDVVVEIV 299          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16533.4111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ08_ECTSI8.110e-12166.03Carotenoid oxygenase n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A1X9NLA8_9GAMM1.620e-3636.72Dioxygenase n=1 Tax=Oceanicoccus sagamiensis TaxID... [more]
A0A812TMX6_9DINO6.340e-3637.63Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]
A0A7S3Z609_9EUKA8.700e-3635.36Hypothetical protein n=3 Tax=Lotharella globosa Ta... [more]
A0A1Q9D885_SYMMI1.310e-3335.77Apocarotenoid-15,15'-oxygenase n=3 Tax=Symbiodiniu... [more]
A0A812P1W5_SYMPI5.210e-3333.09Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A7S4K0C9_9STRA1.510e-3230.99Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A8J5XI00_DIALT2.330e-3233.82Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S2XA76_9EUKA4.230e-3233.21Hypothetical protein n=2 Tax=Lotharella oceanica T... [more]
UPI001FF50FBD1.280e-3034.59carotenoid oxygenase family protein n=1 Tax=Gordon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16533contigH-elongata_contig16533:9..2914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score364.0
Seed ortholog evalue6e-98
Seed eggNOG ortholog2880.D8LJ08
EggNOG free text desc.oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
EggNOG OGsCOG3670@1,KOG1285@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCarotenoid oxygenase
Ec32 orthologEc-20_002250.1
Exons4
Model size798
Cds size798
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16533.4111.1prot_H-elongata_contig16533.4111.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16533 9..2914 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929967.3772128-CDS-H-elongata_contig16533:8..1431622929967.3772128-CDS-H-elongata_contig16533:8..143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16533 9..143 -
1691679227.6837187-CDS-H-elongata_contig16533:8..1431691679227.6837187-CDS-H-elongata_contig16533:8..143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16533 9..143 -
1622929967.3884828-CDS-H-elongata_contig16533:511..8111622929967.3884828-CDS-H-elongata_contig16533:511..811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16533 512..811 -
1691679227.705541-CDS-H-elongata_contig16533:511..8111691679227.705541-CDS-H-elongata_contig16533:511..811Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16533 512..811 -
1622929967.4117732-CDS-H-elongata_contig16533:1143..14311622929967.4117732-CDS-H-elongata_contig16533:1143..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16533 1144..1431 -
1691679227.716807-CDS-H-elongata_contig16533:1143..14311691679227.716807-CDS-H-elongata_contig16533:1143..1431Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16533 1144..1431 -
1622929967.4245036-CDS-H-elongata_contig16533:2839..29141622929967.4245036-CDS-H-elongata_contig16533:2839..2914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16533 2840..2914 -
1691679227.7268891-CDS-H-elongata_contig16533:2839..29141691679227.7268891-CDS-H-elongata_contig16533:2839..2914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16533 2840..2914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16533.4111.1

>prot_H-elongata_contig16533.4111.1 ID=prot_H-elongata_contig16533.4111.1|Name=mRNA_H-elongata_contig16533.4111.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
SGGGRNRDGDRAYGHWFDGDGHISKIVFKDGRVYAQNRFVDTKCWDSGAP
EGQGSAGTPRAWTPRPGGWLKNVFRMPGNPVNTNVMIMGGKLYALCEAGK
PVEIDPVTLETLQEEDLGGIQAFYSAHPTADPSTGETFGIATGGKNGALE
ITRMSPDGTLDKSALFTPPTINVWHDSALTDEYVVAVTSPFVATAGRILK
ALMGFSTIGLAFKWDELLKSEALFFSRETLELVNRVELPDAVSSYHLINA
FQEEEKGDAVTVLVCQ
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mRNA from alignment at H-elongata_contig16533:9..2914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16533.4111.1 ID=mRNA_H-elongata_contig16533.4111.1|Name=mRNA_H-elongata_contig16533.4111.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2906bp|location=Sequence derived from alignment at H-elongata_contig16533:9..2914- (Himanthalia elongata Himel1 dioecious)
TCAGGTGGTGGCCGCAACCGCGACGGTGACCGTGCGTACGGGCACTGGTT TGATGGCGACGGACATATATCCAAGGTAAAGTAGCTACTGGATCAATTGC TAATTGTGAAGACTGTTTTTTTCATGTGACTTGCGGTGCGATTCTGTACC GCTGATATCTTTGGCGGAATCTAAGCTGCATTGGCGAGGAGATATTTGGT GCGGTTGCCAATTCTTCGTACTAGGCTGTAAAAATATATTATAGCAATAT CAAAAACATAGCCGAACCTAGCAGCAAGGTGGGATTACTCAGCTAGCTAG GGAAGTCAAGCACACGATATACTGTGGTTCCACCACAAGCATGTAAAATA ACTGTAAAATTTTATCTCGCTTTCAAGAATCAAGTAATGCGCAACTGCTT TAGAAGACAACATAGGCACTGACTTGGGATGATAATATTCAGGCCACGGC GCATGAAAGAAGAAAAAAATGGGAGATGTTAGTTTCATTCAAAAGACTGA AACCTGGATATTAGGGAGAAGAAAGACTTGGCGGGTCGGGAAAGGGCAGG AGAGGGCAAGCCTAGAAATAGGTTTGAGAGCGGTCTAGTCGTAGAACATA CAATGCTTTTAACACCTTGGTAGGGGGCGCCTCGCTGCCGTGGGCCAATT GCTCGTACCTGCCTTGCCCATGTCTGCGTTGAAATGATCACAAAGCTGCC AGAAATCCTAAATCTACGAGATGAAAACGGTGATGGCCATTCTCGCTGGA TAGCCAGATTTAGCGCATCCTTTGGAACAACATCGACACCACATCGATGT ACATGATTTCCCAGGGTAGACTTGGGTCAACATCACCATATACCGGGAAG AGGCCCTCCGTGGTGCTATACGCTTACGTTATTTCCGATGTATTTTTCCA CCAACGAAGGCGGTCCTACGTAGGGCAATGAAGTGGATATCCGTCTCTCA ATGTTTGAAGGACTTGGCATGAAAGTTTTGAGCATAGTTGGTGCTGAAAA CGAAAATAACTCTAATACATAGAATGTCGCGACTGTTCAACTATTGAAGG TTGGTTCCGTCCACGAAACATAGTGACCGCACCTTGTCGGGTAAGACTTG TTCTGTCTGCAGCACAAGCCTGTGATGTTGCTGAATGTAGGCTGTGGATT TTATTGCCAAGTACCGGTTCTTCCGGTTGATCTCGCTTCCATGTCGCTGA TCTCACTTCTTAACTTATACTTTTTGCGACTCGACGGTAGGTGTCTGAAC TAAGGCGAGCTCATCAATTTTTCCCGGGTTCAGCCTCCGTCCCAACCGCG CTTATACTTGATTATGGGCGCGAAATTATCATCTCTATTCGGTCTTTTTT TGTGCTGCGAGCGTTCCTTGGAAGCTTGGAGCCAACTTCTTCATCACGAA GCCACACCGACCACTCATCCTAACGACGTTACTACTACCGTACATACGAA AACACGCCCCTTTTACGTCATTCACTGTAGTAGATCGTTTTCAAGGACGG AAGAGTGTATGCACAGAACCGCTTCGTGGATACAAAATGCTGGGACTCTG GCGCGCCGGAAGGCCAAGGGTCGGCTGGGACCCCGCGAGCTTGGACGCCA CGACCGGGCGGTTGGCTCAAGAATGTCTTTAGGATGCCGGGGAACCCTGT CAACACGAACGTGATGATAATGGGGGGTAAGCTGTATGCTTTGTGTGAGG CTGGCAAGCCTGTAGAGATTGACCCCGTGACGCTGGAAACCCTGCAGGAG GAAGACTTGGGCGGCATCCAGGTGCCCTTTTTATGTGGTCATATTTTCCC ATATCCGTCAATGGTAGTAATCTTGATTGACACACCACTATTTCATCCAA CGTTAAGCTTGTTGGCGATCGTTTTCTGTCTGCCCAAGTCACGTTCCTTC CTAATTCATTCCGCACTATTTCCCCCCAGAACGCTGTATGTACACATACA TAAAAGTCACACTGTGTACGCACACAGAGACGTCATGCTGTGTGTACACC CACATAAACGTCGTGGTTCCCCGGGCTGCTTGTGATGTCGCACGGAGAAT GAGAGCCGTGACCTGAAGACCTGCCATATATATTCGCTTTTCCGCCTTCG CAGGCGTTTTATTCAGCTCATCCGACGGCAGACCCTTCGACGGGCGAGAC CTTCGGCATCGCAACTGGGGGGAAGAACGGGGCTTTGGAAATCACGCGCA TGTCTCCCGATGGCACCCTCGACAAAAGTGCGCTTTTCACGCCCCCGACC ATAAACGTCTGGCACGACAGCGCACTGACGGACGAATATGTGGTGGCCGT CACGTCGCCTTTCGTTGCCACGGCCGGCCGCATATTGAAAGCGCTAATGG GTTTCTCCACGATCGGCCTGGCGTTCAAGTGGGACGAACTCCTAAAATCG GAGGTAAAAGCAAGTTCCAAAGTCCAGCCCTCGATTCGGCAAGCTGCGTC ATGTGCGGGGCTGATCGATCGAAGTCCTAACTCCGATCTCTTGTGCGTGA GCGTGCGTACACAAGCCGATCTCGGTTTGCATGGTCGTGCGGACGACGAA TCGTGGGGACTCGAGAACCTTTTCCAACCTTGGGCGAATACAAAGTCGTC CTATTCTCTCGACGATGTAGGTCGTGTTAATCCATCAGTTGGTGCACTCG TGTTTCGCGCGCCGATATCCAATCGATATTGAAACACAGGAAATCAAGCG CATTCGTCCGTTGTGGCCACCCGTCGCTTGTGACCGATCGTGCTCCCACG ATGAACTGTTTGTTCTGTTAGGCTCTCTTTTTCTCCAGGGAGACGTTGGA ATTGGTTAATCGGGTGGAGCTACCCGACGCGGTGTCATCGTACCACCTGA TTAACGCTTTCCAGGAAGAAGAGAAAGGGGACGCTGTAACGGTGTTGGTT TGTCAA
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Coding sequence (CDS) from alignment at H-elongata_contig16533:9..2914-

>mRNA_H-elongata_contig16533.4111.1 ID=mRNA_H-elongata_contig16533.4111.1|Name=mRNA_H-elongata_contig16533.4111.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig16533:9..2914- (Himanthalia elongata Himel1 dioecious)
TCAGGTGGTGGCCGCAACCGCGACGGTGACCGTGCGTACGGGCACTGGTT
TGATGGCGACGGACATATATCCAAGTCAGGTGGTGGCCGCAACCGCGACG
GTGACCGTGCGTACGGGCACTGGTTTGATGGCGACGGACATATATCCAAG
ATCGTTTTCAAGGACGGAAGAGTGTATGCACAGAACCGCTTCGTGGATAC
AAAATGCTGGGACTCTGGCGCGCCGGAAGGCCAAGGGTCGGCTGGGACCC
CGCGAGCTTGGACGCCACGACCGGGCGGTTGGCTCAAGAATGTCTTTAGG
ATGCCGGGGAACCCTGTCAACACGAACGTGATGATAATGGGGGGTAAGCT
GTATGCTTTGTGTGAGGCTGGCAAGCCTGTAGAGATTGACCCCGTGACGC
TGGAAACCCTGCAGGAGGAAGACTTGGGCGGCATCCAGATCGTTTTCAAG
GACGGAAGAGTGTATGCACAGAACCGCTTCGTGGATACAAAATGCTGGGA
CTCTGGCGCGCCGGAAGGCCAAGGGTCGGCTGGGACCCCGCGAGCTTGGA
CGCCACGACCGGGCGGTTGGCTCAAGAATGTCTTTAGGATGCCGGGGAAC
CCTGTCAACACGAACGTGATGATAATGGGGGGTAAGCTGTATGCTTTGTG
TGAGGCTGGCAAGCCTGTAGAGATTGACCCCGTGACGCTGGAAACCCTGC
AGGAGGAAGACTTGGGCGGCATCCAGGCGTTTTATTCAGCTCATCCGACG
GCAGACCCTTCGACGGGCGAGACCTTCGGCATCGCAACTGGGGGGAAGAA
CGGGGCTTTGGAAATCACGCGCATGTCTCCCGATGGCACCCTCGACAAAA
GTGCGCTTTTCACGCCCCCGACCATAAACGTCTGGCACGACAGCGCACTG
ACGGACGAATATGTGGTGGCCGTCACGTCGCCTTTCGTTGCCACGGCCGG
CCGCATATTGAAAGCGCTAATGGGTTTCTCCACGATCGGCCTGGCGTTCA
AGTGGGACGAACTCCTAAAATCGGAGGCGTTTTATTCAGCTCATCCGACG
GCAGACCCTTCGACGGGCGAGACCTTCGGCATCGCAACTGGGGGGAAGAA
CGGGGCTTTGGAAATCACGCGCATGTCTCCCGATGGCACCCTCGACAAAA
GTGCGCTTTTCACGCCCCCGACCATAAACGTCTGGCACGACAGCGCACTG
ACGGACGAATATGTGGTGGCCGTCACGTCGCCTTTCGTTGCCACGGCCGG
CCGCATATTGAAAGCGCTAATGGGTTTCTCCACGATCGGCCTGGCGTTCA
AGTGGGACGAACTCCTAAAATCGGAGGCTCTCTTTTTCTCCAGGGAGACG
TTGGAATTGGTTAATCGGGTGGAGCTACCCGACGCGGTGTCATCGTACCA
CCTGATTAACGCTTTCCAGGAAGAAGAGAAAGGGGACGCTGTAACGGTGT
TGGTTTGTCAAGCTCTCTTTTTCTCCAGGGAGACGTTGGAATTGGTTAAT
CGGGTGGAGCTACCCGACGCGGTGTCATCGTACCACCTGATTAACGCTTT
CCAGGAAGAAGAGAAAGGGGACGCTGTAACGGTGTTGGTTTGTCAA
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