mRNA_H-elongata_contig16504.4100.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16504.4100.1
Unique NamemRNA_H-elongata_contig16504.4100.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16504.4100.1 vs. uniprot
Match: D7FXV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV5_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 1.230e-34
Identity = 74/147 (50.34%), Postives = 96/147 (65.31%), Query Frame = 1 
Query:   10 EDKQHVLAWEAFAADLSRGDCTMTSLSERARVTLPTGQAVSKEEYKLACAASMDDGTTLGKAG--SGDLERLNAVALARPLLSPARAFATRA----EKSGRLCIFIPFKAHANRVTEMRMYAQNIALLAARGYTMAPDDNFAPVIRP 432
            EDK H LAWEAF+AD+ RGDCTM SLSE+A VTLP GQ V+K+EY+LAC  SM D TT+G+     G L  ++ V  +   +  A+A + +     + S     F+      N++ E+RMYAQNIALLAARGYTM P  ++ PVIRP
Sbjct:   30 EDKTHTLAWEAFSADMGRGDCTMDSLSEQASVTLPIGQTVTKDEYRLACENSMGD-TTVGETSLHDGKLVSIDRVNFSVEAMVTAKATSLKTGFQQDVSYPAAFFMTIDLRTNKLAEVRMYAQNIALLAARGYTMIPSSSYGPVIRP 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16504.4100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXV5_ECTSI1.230e-3450.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16504contigH-elongata_contig16504:908..5230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_001360.1
Exons7
Model size1035
Cds size363
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.4075205-UTR-H-elongata_contig16504:907..9651622929966.4075205-UTR-H-elongata_contig16504:907..965Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16504 908..965 +
1691679227.299557-UTR-H-elongata_contig16504:907..9651691679227.299557-UTR-H-elongata_contig16504:907..965Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16504 908..965 +
1622929966.4252186-UTR-H-elongata_contig16504:1514..15311622929966.4252186-UTR-H-elongata_contig16504:1514..1531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16504 1515..1531 +
1691679227.3090467-UTR-H-elongata_contig16504:1514..15311691679227.3090467-UTR-H-elongata_contig16504:1514..1531Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16504 1515..1531 +
1622929966.5576148-UTR-H-elongata_contig16504:4633..52301622929966.5576148-UTR-H-elongata_contig16504:4633..5230Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16504 4634..5230 +
1691679227.3858874-UTR-H-elongata_contig16504:4633..52301691679227.3858874-UTR-H-elongata_contig16504:4633..5230Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16504 4634..5230 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929966.4409974-CDS-H-elongata_contig16504:1531..15531622929966.4409974-CDS-H-elongata_contig16504:1531..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 1532..1553 +
1691679227.3213806-CDS-H-elongata_contig16504:1531..15531691679227.3213806-CDS-H-elongata_contig16504:1531..1553Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 1532..1553 +
1622929966.4588318-CDS-H-elongata_contig16504:2001..20451622929966.4588318-CDS-H-elongata_contig16504:2001..2045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 2002..2045 +
1691679227.3389435-CDS-H-elongata_contig16504:2001..20451691679227.3389435-CDS-H-elongata_contig16504:2001..2045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 2002..2045 +
1622929966.4738698-CDS-H-elongata_contig16504:2576..26151622929966.4738698-CDS-H-elongata_contig16504:2576..2615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 2577..2615 +
1691679227.347033-CDS-H-elongata_contig16504:2576..26151691679227.347033-CDS-H-elongata_contig16504:2576..2615Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 2577..2615 +
1622929966.495169-CDS-H-elongata_contig16504:3966..41191622929966.495169-CDS-H-elongata_contig16504:3966..4119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 3967..4119 +
1691679227.3549008-CDS-H-elongata_contig16504:3966..41191691679227.3549008-CDS-H-elongata_contig16504:3966..4119Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 3967..4119 +
1622929966.516866-CDS-H-elongata_contig16504:4288..43511622929966.516866-CDS-H-elongata_contig16504:4288..4351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 4289..4351 +
1691679227.3651206-CDS-H-elongata_contig16504:4288..43511691679227.3651206-CDS-H-elongata_contig16504:4288..4351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 4289..4351 +
1622929966.535465-CDS-H-elongata_contig16504:4591..46331622929966.535465-CDS-H-elongata_contig16504:4591..4633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 4592..4633 +
1691679227.3769064-CDS-H-elongata_contig16504:4591..46331691679227.3769064-CDS-H-elongata_contig16504:4591..4633Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16504 4592..4633 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16504.4100.1prot_H-elongata_contig16504.4100.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16504 1532..4633 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16504.4100.1

>prot_H-elongata_contig16504.4100.1 ID=prot_H-elongata_contig16504.4100.1|Name=mRNA_H-elongata_contig16504.4100.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MTSLSERARVTLPTGQAVSKEEYKLACAASMDDGTTLGKAGSGDLERLNA
VALARPLLSPARAFATRAEKSGRLCIFIPFKAHANRVTEMRMYAQNIALL
AARGYTMAPDDNFAPVIRPA*
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mRNA from alignment at H-elongata_contig16504:908..5230+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16504.4100.1 ID=mRNA_H-elongata_contig16504.4100.1|Name=mRNA_H-elongata_contig16504.4100.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4323bp|location=Sequence derived from alignment at H-elongata_contig16504:908..5230+ (Himanthalia elongata Himel1 dioecious)
CAGCAGAAGGAGGACAAGCAGCACGTGTTAGCCTGGGAGGCGTTCGCCGC
AGATTTGAGTGAGTACAGTATCTAATATCGAGGCACTATACCTCTAGGGT
GCTCAGAGGCTCTCCTGAGCTTCAGCCTACAAACGGAGCCTCCGCGCGTA
AGACAATTCGTAGTTTTTATGCTCGCGGCGTACATCATTAATATCTTCCC
TTAGGAGCTCAACGTAGAGTGGAAGGCCGCAAGAGACATGGGCTTGGATC
GGCGAAAATCCAAGAACCAGAAGCCAACATCCATTATTGATTACCGCAGG
AACTGCAAGAAAACAAAACCGCGAAACCTTCGGCACCACCGGCAGCTAGT
TGTTGAACAGATTTCCGACCAACCATCTTCTCTTTGAGCTCGGAGTTGAT
GGTCGGACCAGCATGAGTGTGCCTGATCAAAGGTGTCGGGGTATTCCTCG
GATTTCGTGAACTCTCAAATATCTGGTGAGAGCGATATATCATCTCAGCG
CCTCCCTTGCAGCCGTTATCCCCCCCCCCCCAACCAATTATTTTCCTACC
CATTCCCTTCCGCACCTTCGAAACGCCGAACCCAATGGCGCGACGGCCGA
CAATCAGGCCGAGGCGATTGTACGATGACATCACTCTCCGAACGAGGTGC
AGTGCAGTGCAAAGCACACCATTAGAGTATCGAGTTATGCTGTCAACAGC
TGTAGAAAAATGTTTTTAGCACCTCTTATTTCCTCGTGAAAAGCGGTTGA
TCTCCGCTTCCGCAAGACAAGTTTTGGGGGCCCGTCGAGTATTGGAGCTG
GGCGACGTGACCAGGGAAAAATCATACGGGTGTTTTATGTTCCTGCTCCT
GGCGCGATGCCACTTTTCTTAGACACTACGTCTGTTTAGTATCCGCCTCA
GTTTCATGGAAACCCACCAAGTTGCTGTGATACGTTTAGACTAGAGGAGA
GGCTCCCCGCTCTCTCTTTCCCTACTACTTCCACTCCTCCGCTCATGTTT
GGCTAGGGTTGACGCACAGCTCACTCTCGCTGGTGCGCACGCATGCCTTG
CCCGCGCGCTTATTTCGCACTCGCTCTCGTGGTTCGCTAAGCAGCAAGAG
TTACGCTACCGACCGGGCAGGCGGTTTCCAAAGAAGAGGTATGTAGAGTT
TTAGCCGCTTGTTTCGACACGAGACGGGACGAGATTGAATAACATGGTAG
TTGTCGGCGTACTCGCTTGTCCCGAAGCGCTTGAAAGCAGCCACGCTTTT
GTCTTAAGTTGCTTGCAGCAGCAGCGCCTGGTATTTTAGACTCACGGAAC
TCCCGACACCACCCGGCTGCGAGAGGAGGATCAAGAGCTCAGGGTCAAAG
CACCGGTAGGAGAATGCTTTGACTGGGTCCTCTTTCCCTAAGACAGGTTA
GTCGAGGCGGGAAATCGTGCGAAAACGACGCGCCGACGCTTACCTCGTGC
TGCGTGTCGCAAAATATACTCTGAAGTCTTCTCCTTCGGCTTTGGTGTCG
CCACCACGCCGCGTCAACGTGTCTGCTCTATGGTCTGGTTGGGTTACGCG
TGGTCACCTCCGGCCGGGCTAAACTTTGCTCCCCCATGCTGCATGTCGCT
GTTGATGCCTGCGTCGGTTGGTCGGCTGGCCGGCCGGAATCGCTTCCCCT
TCCATTTCTCATTTCGCAGTACAAGTTAGCTTGTGCCGCCAGCATGGACG
ATGGAACCGTTGAGGGAACATACATAGCACCGGGACAGGCGAGTGCTTCA
CTTCCTCTTTGATGGTGTAGCCGACGTGGGGTTGCCTCGCAGTGTGGACA
CACAACATAGGCTTTCTCAGCTCAGCTGAGTCGCCCGGCCTCGTGCCCTC
GGTCTACTCCGGTTGAGGCGTGAGTTTCTTGACTTCATTGTTAACCAGGC
AGGTTTCCTTACTATTCGTAAATGCTCTCCGAACGCAGCAGATAGTCGGG
CACCACTTTGCGCAGGAAAAGAGCTCAAAGGTAGTAATGTACACATTCGA
ATCTGACGATAGTTGGTCCCCTGGACTGCACCTCTCACGGCGCTAAGAAG
GTGTGGATGTTCGGAGGGAGGGTTGGAATGAGTTCAAGTTTTTTTTAAGG
GAAATTACTTGCCCCCACCCATCCCCTGCTCTGGTCTAACAGTGAAGACA
TTCAAAACTTTACAACCCCCCCCCCTCCCCTACATGAAAGGAAATATGTA
CATAGTATATCTGACTGAAATAGGGAAAATTGAAGGTTGTGATACGAGAC
TTTTGAATCATGGGGCCGCTAGATGGAGGTGGTAGCGCTATGAGAAAGCG
AAAACTGATGTATAGTAGATATTATATGAAAATATATATTTGCGCCGCCT
TTGGCGAAGTAAGACGGAACGATTGGCCATCGGCGATCAACCATGTTGGA
AGCAATATTCTGTTCTTCTGAGTACGCATCGTCAATAGAAAGTCTAACAG
CCAAGACATGCAACACTTGATTGCGCGCCTCCCGCCCCGTCCCTCTTCCT
CTCTAACAAACCGAGCGTGTTTCTTGTGTACCGTGTTCATAGCTGGTGAC
GATGGAGGATTCGACCTTCAATGTGGAGACGAGCATCACGACCGATGCTG
TCGCCCGTCAGGTGTGATGGTACTTGCTACTGCACCGTTCCGGTGGAAAT
TCCGGGCAGCGAGCGCACGTGTCCCCATGACAGCTGCGTAGAGCTTGATC
ACTAGCGTTAGTCGGAGAGGAATAGAAAGAGAGAGAGAGACGAGTGGGCA
TCCGCTTCTCGAAGATGCCGGGACAGCGGCAAAATCATCGAGGGTTATAA
GATACGATACCGCTTAGAAGGTGTTGAAGAGCGTCTACACAATAACGTAC
CTGGTAGATCGTTGGCCGAAAAGTTAACTAAATTGAAGCATTCTGCGCCT
CTGATGGTCTCTTCCGCTCCATTTTCACACACCCTGCCCCCCCCGCTTCC
CGTTATTTCGTCATTATGTTTCCCGCCTGCTGCAGGACGGCACAAAGCGA
CGAATCAGCTACCCTGTAGCATTTTTTATGACGATGGACCTTACGACGAA
CGAGGCAAGACTTTAGGGAAGGCGGGGAGCGGGGATCTCGAGCGTCTCAA
CGCGGTGGCTTTGGCGCGCCCGCTCCTTTCCCCCGCCCGCGCGTTCGCGA
CGCGTGCCGAGAAGTCAGGAAGGCTGTGCATTTTTATACCTTTTAAGGCG
CATGCAAATCGGGTTGAGCACGACACGACAACCACGAACTTTGTTCTCTT
CGCCCTTGTCTTGACCCTATCGTGGCTGTGGTGGATGGGGTCAATAATCG
CGGAAACCGACGTTTGCCTCCTTCGATCGAGTCGTGTGTCTCAATCGTTG
GCGCGGAATTTTCTCATCCCTGGATGCGTAGGTGACGGAGATGCGCATGT
ATGCGCAGAATATCGCGCTGCTGGCTGCCCGAGGGTACACCATGGTGAGA
AAGAGAGATCGAGAGAGCCAGGAGATGCGCTTTTGTCAACCTTCCCTGCC
CGTTTGATTATTTTTCTTTGCTTGATTGCCCGAGATGACCATTGGCTTTC
CAGAAGCACAGTGCACAATGACCGCAGCGCCCACCACAAGATATTTTATT
TTCACTTCCCTGTCTGTCTTGGGAGCCTCACCACCTCGACCCCCCCTGCG
CACCTTCCCATGCTTCGACCTCTCATCCCGGCAGGCCCCAGACGATAACT
TCGCGCCCGTGATTCGTCCGGCATAGCGCGCACTCGAGGTCGCGCGACAG
CAAGTTTGTGGTGTAACAGCCACGTGATTGGCACGCTGTGTATATGGTAA
GAGTGGGAGAGGGCGACACAAAGGTTTCTTTATAGGGGGAGTCGTGTCTA
TTGCCGTGCGTTCTATGTCTTCGGGTATAAGGGTGGTCGATAGATTTATA
AAATGTAGTGCATGTCTATGGAGGGGGGGGGGGACAGACAACTTGTACGT
GTATTCTCTGTGTTAATTTGTGAAGCAACGGTTTCGAAGATGTCATAAGG
TGTCATTTTCAGGTTTGATCCTCCGAGTCAGATGTTTACAATAGTTGCCA
AGGATATTTTTAGTTAAAAGCTTTAGTGCCTCTTCAATACCGAATGTATA
CCATGGTACATATAAATGCGGCTCTAGTAAATTGTGCTGGTGAGGCCGAT
TCCGAAGATTCCTTAGTTTTTTTTTTACGATTGCTCGCCAAAACGGAATG
AAAATCATGCGGACTAATATTTTTATTTAAAATACTTTAGGCTCATTCTA
ACTCTCCGAACATCCACACCTTCATGCACCATAGGTGCAATCCAGGGAAC
CAACTATCAGAAAGCAGTAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig16504:908..5230+

>mRNA_H-elongata_contig16504.4100.1 ID=mRNA_H-elongata_contig16504.4100.1|Name=mRNA_H-elongata_contig16504.4100.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig16504:908..5230+ (Himanthalia elongata Himel1 dioecious)
ATGACATCACTCTCCGAACGAGATGACATCACTCTCCGAACGAGCAAGAG
TTACGCTACCGACCGGGCAGGCGGTTTCCAAAGAAGAGCAAGAGTTACGC
TACCGACCGGGCAGGCGGTTTCCAAAGAAGAGTACAAGTTAGCTTGTGCC
GCCAGCATGGACGATGGAACCTACAAGTTAGCTTGTGCCGCCAGCATGGA
CGATGGAACCACTTTAGGGAAGGCGGGGAGCGGGGATCTCGAGCGTCTCA
ACGCGGTGGCTTTGGCGCGCCCGCTCCTTTCCCCCGCCCGCGCGTTCGCG
ACGCGTGCCGAGAAGTCAGGAAGGCTGTGCATTTTTATACCTTTTAAGGC
GCATGCAAATCGGACTTTAGGGAAGGCGGGGAGCGGGGATCTCGAGCGTC
TCAACGCGGTGGCTTTGGCGCGCCCGCTCCTTTCCCCCGCCCGCGCGTTC
GCGACGCGTGCCGAGAAGTCAGGAAGGCTGTGCATTTTTATACCTTTTAA
GGCGCATGCAAATCGGGTGACGGAGATGCGCATGTATGCGCAGAATATCG
CGCTGCTGGCTGCCCGAGGGTACACCATGGTGACGGAGATGCGCATGTAT
GCGCAGAATATCGCGCTGCTGGCTGCCCGAGGGTACACCATGGCCCCAGA
CGATAACTTCGCGCCCGTGATTCGTCCGGCATAGGCCCCAGACGATAACT
TCGCGCCCGTGATTCGTCCGGCATAG
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