mRNA_H-elongata_contig164977.4095.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164977.4095.1
Unique NamemRNA_H-elongata_contig164977.4095.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig164977.4095.1 vs. uniprot
Match: A0A6H5JRV9_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV9_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.420e-23
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 LRVVCYNILADMYCTSVQADEVLYPHCPKEFREADYRFQMIAREIRGYEADLIMLQ 168
            LRV+CYNILADMYCTS QADEVLYP+CPKE+R  DYR QM+ARE+RG+ ADLIMLQ
Sbjct:  449 LRVMCYNILADMYCTSEQADEVLYPYCPKEYRAMDYRMQMVAREVRGHAADLIMLQ 504          
BLAST of mRNA_H-elongata_contig164977.4095.1 vs. uniprot
Match: D7FYP3_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP3_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 4.910e-23
Identity = 44/56 (78.57%), Postives = 51/56 (91.07%), Query Frame = 1
Query:    1 LRVVCYNILADMYCTSVQADEVLYPHCPKEFREADYRFQMIAREIRGYEADLIMLQ 168
            LRV+CYNILADMYCTS QAD+VLYP+CPKE+R  DYR QM+ARE+RG+ ADLIMLQ
Sbjct:  276 LRVMCYNILADMYCTSEQADKVLYPYCPKEYRAMDYRMQMVAREVRGHAADLIMLQ 331          
BLAST of mRNA_H-elongata_contig164977.4095.1 vs. uniprot
Match: UPI001D062F6F (2',5'-phosphodiesterase 12 isoform X1 n=2 Tax=Chrysoperla carnea TaxID=189513 RepID=UPI001D062F6F)

HSP 1 Score: 70.9 bits (172), Expect = 6.970e-13
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    4 RVVCYNILADMYCTSVQADEVLYPHCPKEFREADYRFQMIAREIRGYEADLIMLQ 168
            RVV YNILAD+YC S    E LYP+CP E  + DYR Q+I +E+ GY+ADLI LQ
Sbjct:  264 RVVTYNILADLYCDSDYTRETLYPYCPPEALDIDYRKQLILKELIGYKADLICLQ 318          
BLAST of mRNA_H-elongata_contig164977.4095.1 vs. uniprot
Match: UPI0018D89EB2 (LOW QUALITY PROTEIN: 2',5'-phosphodiesterase 12-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D89EB2)

HSP 1 Score: 68.9 bits (167), Expect = 3.330e-12
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    4 RVVCYNILADMYCTSVQADEVLYPHCPKEFREADYRFQMIAREIRGYEADLIMLQ 168
            RVV YNILADMY  S  + +VLYP+CPK+  + DYR Q+I +E+ GY AD++ LQ
Sbjct:  318 RVVSYNILADMYADSDFSRDVLYPYCPKDVLDIDYREQLILKELTGYNADILCLQ 372          
BLAST of mRNA_H-elongata_contig164977.4095.1 vs. uniprot
Match: UPI0014259517 (2',5'-phosphodiesterase 12-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014259517)

HSP 1 Score: 68.9 bits (167), Expect = 3.330e-12
Identity = 32/56 (57.14%), Postives = 41/56 (73.21%), Query Frame = 1
Query:    1 LRVVCYNILADMYCTSVQADEVLYPHCPKEFREADYRFQMIAREIRGYEADLIMLQ 168
            LR+V YNILA+MY  S  + +VLYP+CP E  + DYR Q+I +E+ GY ADLI LQ
Sbjct:  321 LRIVSYNILAEMYADSDFSRDVLYPYCPPELLDIDYREQVILKELTGYNADLICLQ 376          
BLAST of mRNA_H-elongata_contig164977.4095.1 vs. uniprot
Match: A0A8B7ZEU9_ACAPL (2',5'-phosphodiesterase 12-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZEU9_ACAPL)

HSP 1 Score: 67.8 bits (164), Expect = 8.490e-12
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    4 RVVCYNILADMYCTSVQADEVLYPHCPKEFREADYRFQMIAREIRGYEADLIMLQ 168
            RVV YNILADMY  S  + +VLYP+CPK+  + DYR Q++ +E+ GY AD++ LQ
Sbjct:  315 RVVSYNILADMYADSDFSRDVLYPYCPKDVLDIDYREQLLLKELTGYNADIMCLQ 369          
BLAST of mRNA_H-elongata_contig164977.4095.1 vs. uniprot
Match: UPI000C25316B (2',5'-phosphodiesterase 12 n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C25316B)

HSP 1 Score: 67.0 bits (162), Expect = 1.580e-11
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 1
Query:    1 LRVVCYNILADMYCTSVQADEVLYPHCPKEFREADYRFQMIAREIRGYEADLIMLQ 168
            +RVV YNILAD+YC S     VL+P+CP    E DYR Q+I +EI GY AD+I LQ
Sbjct:  259 VRVVTYNILADLYCNSDYTRTVLHPYCPPYALEIDYRKQLILKEIIGYNADIICLQ 314          
BLAST of mRNA_H-elongata_contig164977.4095.1 vs. uniprot
Match: UPI001D07EC0A (2',5'-phosphodiesterase 12 n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D07EC0A)

HSP 1 Score: 66.6 bits (161), Expect = 2.160e-11
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 LRVVCYNILADMYCTSVQADEVLYPHCPKEFREADYRFQMIAREIRGYEADLIMLQ 168
            +RVV YNILAD+YC S    +VL+P+CP    + DYR Q+I +E+ GY AD+I LQ
Sbjct:  250 IRVVTYNILADLYCDSDYTRDVLHPYCPAYALQLDYRKQLILKELLGYNADIICLQ 305          
BLAST of mRNA_H-elongata_contig164977.4095.1 vs. uniprot
Match: A0A817FEX9_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817FEX9_9BILA)

HSP 1 Score: 62.0 bits (149), Expect = 2.460e-11
Identity = 28/58 (48.28%), Postives = 41/58 (70.69%), Query Frame = 1
Query:    1 LRVVCYNILAD--MYCTSVQADEVLYPHCPKEFREADYRFQMIAREIRGYEADLIMLQ 168
            +R+V YNILA+   Y +S  A + +YP+CP++F E DYR  ++ +EI GY AD+I LQ
Sbjct:   19 IRLVSYNILANGYAYASSTDAQQTIYPYCPQDFLEHDYRKPLLLKEILGYHADIISLQ 76          
BLAST of mRNA_H-elongata_contig164977.4095.1 vs. uniprot
Match: T2MBJ1_HYDVU (2',5'-phosphodiesterase 12 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2MBJ1_HYDVU)

HSP 1 Score: 65.9 bits (159), Expect = 4.030e-11
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 1
Query:    1 LRVVCYNILADMYCTSVQADEVLYPHCPKEFREADYRFQMIAREIRGYEADLIMLQ 168
            LR++ YNILAD++C S  A EVLYP+CPK   +  YR  ++ +E+ G+ AD++ LQ
Sbjct:  226 LRIITYNILADVFCDSEYASEVLYPYCPKYALKLSYRMNLLIKELIGFNADILCLQ 281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164977.4095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRV9_9PHAE1.420e-2380.36Endo/exonuclease/phosphatase domain-containing pro... [more]
D7FYP3_ECTSI4.910e-2378.57Endo/exonuclease/phosphatase domain-containing pro... [more]
UPI001D062F6F6.970e-1360.002',5'-phosphodiesterase 12 isoform X1 n=2 Tax=Chry... [more]
UPI0018D89EB23.330e-1256.36LOW QUALITY PROTEIN: 2',5'-phosphodiesterase 12-li... [more]
UPI00142595173.330e-1257.142',5'-phosphodiesterase 12-like n=1 Tax=Anneissia ... [more]
A0A8B7ZEU9_ACAPL8.490e-1254.552',5'-phosphodiesterase 12-like n=1 Tax=Acanthaste... [more]
UPI000C25316B1.580e-1157.142',5'-phosphodiesterase 12 n=1 Tax=Leptinotarsa de... [more]
UPI001D07EC0A2.160e-1153.572',5'-phosphodiesterase 12 n=1 Tax=Coccinella sept... [more]
A0A817FEX9_9BILA2.460e-1148.28Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
T2MBJ1_HYDVU4.030e-1148.212',5'-phosphodiesterase 12 n=2 Tax=Hydra vulgaris ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164977contigH-elongata_contig164977:412..956 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue3.6e-19
Seed eggNOG ortholog2880.D7FYP3
KEGG koko:K19612
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG0620@2759
EC3.1.13.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-26_004210.1
Exons2
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929965.0931594-CDS-H-elongata_contig164977:411..4461622929965.0931594-CDS-H-elongata_contig164977:411..446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164977 412..446 +
1691679226.55693-CDS-H-elongata_contig164977:411..4461691679226.55693-CDS-H-elongata_contig164977:411..446Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164977 412..446 +
1622929965.1106489-CDS-H-elongata_contig164977:814..9561622929965.1106489-CDS-H-elongata_contig164977:814..956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164977 815..956 +
1691679226.5686595-CDS-H-elongata_contig164977:814..9561691679226.5686595-CDS-H-elongata_contig164977:814..956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164977 815..956 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164977.4095.1prot_H-elongata_contig164977.4095.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164977 412..956 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164977.4095.1

>prot_H-elongata_contig164977.4095.1 ID=prot_H-elongata_contig164977.4095.1|Name=mRNA_H-elongata_contig164977.4095.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
LRVVCYNILADMYCTSVQADEVLYPHCPKEFREADYRFQMIAREIRGYEA
DLIMLQVR*
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mRNA from alignment at H-elongata_contig164977:412..956+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164977.4095.1 ID=mRNA_H-elongata_contig164977.4095.1|Name=mRNA_H-elongata_contig164977.4095.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=545bp|location=Sequence derived from alignment at H-elongata_contig164977:412..956+ (Himanthalia elongata Himel1 dioecious)
CTCCGTGTTGTGTGCTACAATATTCTCGCTGACATGTGAGAGCAGCAGAG CTATTCGTACGGAGGAAAATCAAGAGAGGGCGGGGAAAAGTAGGAGGGTT GGGGGGAGAGTTGATCGGGATGAGGATCAAAGGACATGCCATGAACATCA AAGGGGATGCGATCGATTGACCGAAACAGCCTTGTGACTCGTGGGTGTTA AGTTCCGATGGTGTGCGGTGGTGGGGCTAGTGTTGGATCGATCGAAGAAA CATAGCTTTTCTTCCTTCTGCTGCCTATTTCCGTCGGTCGGGGGTGGCTT TGGCTGCAAAAGCCAAGTTGTTACATACAATTTTACGTGCTAGCATCGGC CTCCGGGGGGGTTTGCACTTATCTGATGACGTCATATAATCTGCAACTGG CAGGTACTGCACGTCTGTTCAGGCCGACGAGGTATTGTATCCACACTGCC CGAAGGAGTTCCGCGAGGCGGACTACCGCTTTCAGATGATAGCCAGGGAG ATCAGGGGCTACGAGGCCGACTTGATCATGCTCCAGGTACGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig164977:412..956+

>mRNA_H-elongata_contig164977.4095.1 ID=mRNA_H-elongata_contig164977.4095.1|Name=mRNA_H-elongata_contig164977.4095.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig164977:412..956+ (Himanthalia elongata Himel1 dioecious)
CTCCGTGTTGTGTGCTACAATATTCTCGCTGACATCTCCGTGTTGTGTGC
TACAATATTCTCGCTGACATGTACTGCACGTCTGTTCAGGCCGACGAGGT
ATTGTATCCACACTGCCCGAAGGAGTTCCGCGAGGCGGACTACCGCTTTC
AGATGATAGCCAGGGAGATCAGGGGCTACGAGGCCGACTTGATCATGCTC
CAGGTACGCTAAGTACTGCACGTCTGTTCAGGCCGACGAGGTATTGTATC
CACACTGCCCGAAGGAGTTCCGCGAGGCGGACTACCGCTTTCAGATGATA
GCCAGGGAGATCAGGGGCTACGAGGCCGACTTGATCATGCTCCAGGTACG
CTAA
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