mRNA_H-elongata_contig164807.4085.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164807.4085.1
Unique NamemRNA_H-elongata_contig164807.4085.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig164807.4085.1 vs. uniprot
Match: UPI00103F0D66 (uncharacterized protein LOC114362197 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103F0D66)

HSP 1 Score: 51.2 bits (121), Expect = 1.140e-5
Identity = 27/93 (29.03%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:    1 VQGAESPRKAWSKLVQHYHASGLKEQRRLTVDLFTMEMELGEHPSNFFLSVDQMAKELGRVERPVDPKDVDIVILSGLTPQYDAEVRMLESSS 279
            ++ A+S  +AW+ L + Y   GL  +  L   LF  ++        +   + +++ +L  +E P+D + V ++ILSGLT  YD  +  +E SS
Sbjct:   71 IRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163
[Close]
BLAST of mRNA_H-elongata_contig164807.4085.1 vs. uniprot
Match: A0A2H1VB05_SPOFR (SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VB05_SPOFR)

HSP 1 Score: 50.4 bits (119), Expect = 1.370e-5
Identity = 25/93 (26.88%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:    1 VQGAESPRKAWSKLVQHYHASGLKEQRRLTVDLFTMEMELGEHPSNFFLSVDQMAKELGRVERPVDPKDVDIVILSGLTPQYDAEVRMLESSS 279
            ++ A+S  +AW  L + Y   GL  +  L   LF+ ++        +   + +++ +L  +E P+D + V +++LSGLT  YD  +  +E S+
Sbjct:   43 IRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFSTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHST 135
[Close]
BLAST of mRNA_H-elongata_contig164807.4085.1 vs. uniprot
Match: UPI001F8D56D1 (Uncharacterized protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=UPI001F8D56D1)

HSP 1 Score: 52.0 bits (123), Expect = 1.500e-5
Identity = 26/92 (28.26%), Postives = 49/92 (53.26%), Query Frame = 1 
Query:    1 VQGAESPRKAWSKLVQHYHASGLKEQRRLTVDLFTMEMELGEHPSNFFLSVDQMAKELGRVERPVDPKDVDIVILSGLTPQYDAEVRMLESS 276
            ++ A+S  +AW+ L + Y   GL  +  L   LF  ++        +   + ++A +L  +E P+D + + ++ILSGLT  YD  +  +E+S
Sbjct:   69 IRTAKSAYEAWNNLKKTYEGKGLCRKLGLLRSLFGTKLADSNSMDGYLNKIKEVAHQLSEIESPLDDEFIAVIILSGLTSDYDPLIMAIENS 160
[Close]
BLAST of mRNA_H-elongata_contig164807.4085.1 vs. uniprot
Match: UPI00103FEA55 (uncharacterized protein LOC114361313 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103FEA55)

HSP 1 Score: 51.2 bits (121), Expect = 2.610e-5
Identity = 27/93 (29.03%), Postives = 49/93 (52.69%), Query Frame = 1 
Query:    1 VQGAESPRKAWSKLVQHYHASGLKEQRRLTVDLFTMEMELGEHPSNFFLSVDQMAKELGRVERPVDPKDVDIVILSGLTPQYDAEVRMLESSS 279
            ++ A+S  +AW+ L + Y   GL  +  L   LF  ++        +   + +++ +L  +E P+D + V ++ILSGLT  YD  +  +E SS
Sbjct:   71 IRTAKSAHEAWTILQKTYEGRGLSRRLGLLRSLFNTKLSECSSMEVYLNKIKEISHQLSEIESPLDDELVAVIILSGLTDDYDPLIMAIEHSS 163
[Close]
BLAST of mRNA_H-elongata_contig164807.4085.1 vs. uniprot
Match: A0A2H1WMK4_SPOFR (SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1WMK4_SPOFR)

HSP 1 Score: 50.1 bits (118), Expect = 6.260e-5
Identity = 25/93 (26.88%), Postives = 48/93 (51.61%), Query Frame = 1 
Query:    1 VQGAESPRKAWSKLVQHYHASGLKEQRRLTVDLFTMEMELGEHPSNFFLSVDQMAKELGRVERPVDPKDVDIVILSGLTPQYDAEVRMLESSS 279
            ++ A+S  +AW  L + Y   GL  +  L   LF  ++        +   + +++ +L  +E P+D + V +++LSGLT  YD  +  +E S+
Sbjct:   74 IRTAKSAHEAWKILQKAYEGRGLSRRLGLLRSLFNTKLSENSSMEVYLNKIKEISHQLNEIESPLDDEFVAVIMLSGLTDDYDPLIMAIEHST 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164807.4085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
UPI00103F0D661.140e-529.03uncharacterized protein LOC114362197 n=1 Tax=Ostri... [more]
A0A2H1VB05_SPOFR1.370e-526.88SFRICE_041671 (Fragment) n=1 Tax=Spodoptera frugip... [more]
UPI001F8D56D11.500e-528.26Uncharacterized protein n=1 Tax=Spodoptera exigua ... [more]
UPI00103FEA552.610e-529.03uncharacterized protein LOC114361313 n=2 Tax=Ostri... [more]
A0A2H1WMK4_SPOFR6.260e-526.88SFRICE_021333 n=1 Tax=Spodoptera frugiperda TaxID=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164807contigH-elongata_contig164807:997..1296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929963.9762235-CDS-H-elongata_contig164807:996..12961622929963.9762235-CDS-H-elongata_contig164807:996..1296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164807 997..1296 -
1691679226.1324437-CDS-H-elongata_contig164807:996..12961691679226.1324437-CDS-H-elongata_contig164807:996..1296Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164807 997..1296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164807.4085.1prot_H-elongata_contig164807.4085.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164807 997..1296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164807.4085.1

>prot_H-elongata_contig164807.4085.1 ID=prot_H-elongata_contig164807.4085.1|Name=mRNA_H-elongata_contig164807.4085.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
VQGAESPRKAWSKLVQHYHASGLKEQRRLTVDLFTMEMELGEHPSNFFLS
VDQMAKELGRVERPVDPKDVDIVILSGLTPQYDAEVRMLESSSDWPTRD*
back to top

mRNA from alignment at H-elongata_contig164807:997..1296-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164807.4085.1 ID=mRNA_H-elongata_contig164807.4085.1|Name=mRNA_H-elongata_contig164807.4085.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig164807:997..1296- (Himanthalia elongata Himel1 dioecious)
GTCCAAGGAGCTGAGTCGCCCAGGAAAGCGTGGTCAAAGCTCGTGCAGCA
CTACCACGCCAGCGGCCTCAAGGAACAACGCCGCCTCACTGTGGACTTAT
TTACGATGGAGATGGAACTCGGCGAGCATCCGAGCAATTTTTTCCTGTCG
GTAGACCAGATGGCCAAGGAACTGGGAAGGGTGGAGCGACCGGTCGACCC
GAAGGACGTGGACATCGTAATTCTGAGCGGCCTCACTCCCCAGTATGACG
CCGAGGTTCGAATGCTGGAGAGCTCATCAGACTGGCCCACTCGAGATTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig164807:997..1296-

>mRNA_H-elongata_contig164807.4085.1 ID=mRNA_H-elongata_contig164807.4085.1|Name=mRNA_H-elongata_contig164807.4085.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig164807:997..1296- (Himanthalia elongata Himel1 dioecious)
GTCCAAGGAGCTGAGTCGCCCAGGAAAGCGTGGTCAAAGCTCGTGCAGCA
CTACCACGCCAGCGGCCTCAAGGAACAACGCCGCCTCACTGTGGACTTAT
TTACGATGGAGATGGAACTCGGCGAGCATCCGAGCAATTTTTTCCTGTCG
GTAGACCAGATGGCCAAGGAACTGGGAAGGGTGGAGCGACCGGTCGACCC
GAAGGACGTGGACATCGTAATTCTGAGCGGCCTCACTCCCCAGTATGACG
CCGAGGTTCGAATGCTGGAGAGCTCATCAGACTGGCCCACTCGAGATTGA
GTCCAAGGAGCTGAGTCGCCCAGGAAAGCGTGGTCAAAGCTCGTGCAGCA
CTACCACGCCAGCGGCCTCAAGGAACAACGCCGCCTCACTGTGGACTTAT
TTACGATGGAGATGGAACTCGGCGAGCATCCGAGCAATTTTTTCCTGTCG
GTAGACCAGATGGCCAAGGAACTGGGAAGGGTGGAGCGACCGGTCGACCC
GAAGGACGTGGACATCGTAATTCTGAGCGGCCTCACTCCCCAGTATGACG
CCGAGGTTCGAATGCTGGAGAGCTCATCAGACTGGCCCACTCGAGATTGA
back to top