mRNA_H-elongata_contig1647.4082.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1647.4082.1 vs. uniprot
Match: D7G842_ECTSI (Mitochondrial TOM complex subunit, Tom20 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G842_ECTSI) HSP 1 Score: 189 bits (479), Expect = 2.890e-57 Identity = 89/133 (66.92%), Postives = 107/133 (80.45%), Query Frame = 1
Query: 1 DGEFVVKKEGEPTEAELSNHNVMKIVAQRCTDEEVNWLVWRCLGYRYETERELWTAEKVFPLWKEKYPEPPDLIGVTRVYSREVDRPVMKANQVLVRSIPREFKRSIMEQLKPIGFTGYKLDELTPNRTRRAQ 399
DGEF+ +EGEPT ELSN N++KIVA++ TDEEVN +VW+CLGYRY+ W A KVFP W+ YPEPPDL+GVTRVY + VD+PV+KA Q L+R+IP E KR I+EQL+PIGFTG LDELTPNRTRRAQ
Sbjct: 85 DGEFLSNREGEPTAEELSNENLIKIVAEKSTDEEVNVVVWKCLGYRYDAGENAWKAVKVFPRWEAMYPEPPDLLGVTRVYEKSVDKPVLKAVQALIRAIPSEHKRCIVEQLRPIGFTGLTLDELTPNRTRRAQ 217
BLAST of mRNA_H-elongata_contig1647.4082.1 vs. uniprot
Match: A0A835YLS9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS9_9STRA) HSP 1 Score: 181 bits (458), Expect = 8.510e-55 Identity = 85/133 (63.91%), Postives = 103/133 (77.44%), Query Frame = 1
Query: 1 DGEFVVKKEGEPTEAELSNHNVMKIVAQRCTDEEVNWLVWRCLGYRYETERELWTAEKVFPLWKEKYPEPPDLIGVTRVYSREVDRPVMKANQVLVRSIPREFKRSIMEQLKPIGFTGYKLDELTPNRTRRAQ 399
D F V KEG PT EL++ N++KI+ +R +DEE NWL W+CLGYR WTA++VFP WK KYP+PPDLIGVTRVYS+EVD P MKANQ LVR+IP E K+S+ + P+GFTG+KLDELTPNRTRRAQ
Sbjct: 30 DQPFHVVKEGPPTTEELTSENLIKIICERSSDEETNWLAWKCLGYRCSAATGEWTADEVFPGWKSKYPQPPDLIGVTRVYSKEVDGPTMKANQALVRAIPLEHKQSLKTHMTPLGFTGFKLDELTPNRTRRAQ 162
BLAST of mRNA_H-elongata_contig1647.4082.1 vs. uniprot
Match: A0A7S3Y7B1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7B1_HETAK) HSP 1 Score: 177 bits (450), Expect = 8.770e-53 Identity = 85/131 (64.89%), Postives = 106/131 (80.92%), Query Frame = 1
Query: 10 FVVKKEG-EPTEAELSNHNVMKIVAQRCTDEEVNWLVWRCLGYRYETERELWTAEKVFPLWKEKYPEPPDLIGVTRVYSREVDRPVMKANQVLVRSIPREFKRSIMEQLKPIGFTGYKLDELTPNRTRRAQ 399
FV+++ EPTEAELSN N++K V Q TDEEVN+LVW+CLGYRY E E WT E VFP W+EKYP PPDLIGVTR YS+EVD+PVMKANQ LVRSIP +K+ + +++K +G+ GYK++ LTPN+TRRAQ
Sbjct: 101 FVLERNNPEPTEAELSNENLVKNVLQENTDEEVNFLVWKCLGYRYNPETEEWTNEDVFPKWREKYPSPPDLIGVTRTYSKEVDQPVMKANQQLVRSIPMPYKQILKQEMKKVGWKGYKMEGLTPNKTRRAQ 231
BLAST of mRNA_H-elongata_contig1647.4082.1 vs. uniprot
Match: A0A7S2RBC0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBC0_9STRA) HSP 1 Score: 173 bits (438), Expect = 5.670e-51 Identity = 81/130 (62.31%), Postives = 103/130 (79.23%), Query Frame = 1
Query: 10 FVVKKEGEPTEAELSNHNVMKIVAQRCTDEEVNWLVWRCLGYRYETERELWTAEKVFPLWKEKYPEPPDLIGVTRVYSREVDRPVMKANQVLVRSIPREFKRSIMEQLKPIGFTGYKLDELTPNRTRRAQ 399
FV+ EPT+ EL+N N+++I+ CTD+EVN LVW+CLGYR ++ W EK FP W+EKYPEPPDLIGVTR Y++EVD PVMKANQ LVR++P +FK+SI + L+P GF G+KLDELTPN+TRRAQ
Sbjct: 73 FVLTDSLEPTDEELTNENMLRIILSMCTDQEVNLLVWKCLGYRKNSDGS-WDNEKCFPKWREKYPEPPDLIGVTRTYTKEVDGPVMKANQALVRTVPMKFKQSIRDHLRPEGFFGFKLDELTPNKTRRAQ 201
BLAST of mRNA_H-elongata_contig1647.4082.1 vs. uniprot
Match: A0A6S9ADJ1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9ADJ1_9STRA) HSP 1 Score: 171 bits (432), Expect = 9.840e-50 Identity = 76/133 (57.14%), Postives = 106/133 (79.70%), Query Frame = 1
Query: 1 DGEFVVKKEGEPTEAELSNHNVMKIVAQRCTDEEVNWLVWRCLGYRYETERELWTAEKVFPLWKEKYPEPPDLIGVTRVYSREVDRPVMKANQVLVRSIPREFKRSIMEQLKPIGFTGYKLDELTPNRTRRAQ 399
+G+FV+ +EG PT+ ELSN N++ I+ C+D EVN LVW+CLGYR+++ ++ WTA++ FP WK +P PPDLIG++R++S+EVD+P +KANQ +VRSIP E K+S+ LKP GFTGY+ ELTPN+TRRAQ
Sbjct: 106 EGDFVITREGGPTKEELSNENLLSILMVECSDLEVNTLVWKCLGYRFDSSKQEWTADECFPNWKANFPTPPDLIGMSRIFSKEVDQPSLKANQAIVRSIPAENKQSLKVHLKPYGFTGYQYAELTPNKTRRAQ 238
BLAST of mRNA_H-elongata_contig1647.4082.1 vs. uniprot
Match: A0A6T7JM13_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7JM13_9STRA) HSP 1 Score: 166 bits (421), Expect = 4.230e-49 Identity = 75/131 (57.25%), Postives = 99/131 (75.57%), Query Frame = 1
Query: 7 EFVVKKEGEPTEAELSNHNVMKIVAQRCTDEEVNWLVWRCLGYRYETERELWTAEKVFPLWKEKYPEPPDLIGVTRVYSREVDRPVMKANQVLVRSIPREFKRSIMEQLKPIGFTGYKLDELTPNRTRRAQ 399
+F++ +EG PT ELSN N+++I+ C+D E N LVW+CLGYR++ E W ++VFP W+ YP PPDLIG+ R+YS+EVDRP +KANQ +VRSIP + K+S+ LKP GFTGYK ELTPN+TRRAQ
Sbjct: 26 QFILTREGPPTPEELSNENLLRILRIECSDLEANTLVWKCLGYRFDASSESWLTDEVFPKWRGNYPSPPDLIGMQRIYSKEVDRPSLKANQSIVRSIPADNKQSLKTHLKPYGFTGYKYAELTPNKTRRAQ 156
BLAST of mRNA_H-elongata_contig1647.4082.1 vs. uniprot
Match: B7G9R5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G9R5_PHATC) HSP 1 Score: 169 bits (429), Expect = 4.250e-49 Identity = 75/133 (56.39%), Postives = 102/133 (76.69%), Query Frame = 1
Query: 1 DGEFVVKKEGEPTEAELSNHNVMKIVAQRCTDEEVNWLVWRCLGYRYETERELWTAEKVFPLWKEKYPEPPDLIGVTRVYSREVDRPVMKANQVLVRSIPREFKRSIMEQLKPIGFTGYKLDELTPNRTRRAQ 399
+ +F++ ++GEP E ELSN N+++I+ C+D EVN LVW+CLGYR++ LW +K FP WKEKYP PPDLIG+ R+YS E+D+P ++ANQ +VRSIP + K+S+ LKP GFTGY+ ELTPN+TRRAQ
Sbjct: 134 ENDFILSRDGEPKELELSNENLLRILRVECSDLEVNTLVWKCLGYRFDPHANLWNNDKCFPKWKEKYPTPPDLIGMQRIYSPEIDKPSLRANQAIVRSIPVDNKQSLKTHLKPYGFTGYQFAELTPNKTRRAQ 266
BLAST of mRNA_H-elongata_contig1647.4082.1 vs. uniprot
Match: A0A7S1CRN4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CRN4_9STRA) HSP 1 Score: 165 bits (417), Expect = 6.820e-48 Identity = 76/133 (57.14%), Postives = 99/133 (74.44%), Query Frame = 1
Query: 1 DGEFVVKKEGEPTEAELSNHNVMKIVAQRCTDEEVNWLVWRCLGYRYETERELWTAEKVFPLWKEKYPEPPDLIGVTRVYSREVDRPVMKANQVLVRSIPREFKRSIMEQLKPIGFTGYKLDELTPNRTRRAQ 399
+G+F++ + G PT E+SN ++KIV C D EVN LVW+CLGYR+ E E W +VFP WKE++P+PPD IG+ RVYSREVD+P +++NQ LVRSIP K+S+ QLKPIG+ GY ELTPN+TRRAQ
Sbjct: 89 EGKFIISRTGPPTAEEMSNEQMLKIVKIECNDLEVNTLVWKCLGYRFNEEEEKWEPTEVFPNWKERFPDPPDFIGMQRVYSREVDQPSLRSNQALVRSIPPGNKQSLKTQLKPIGWKGYNYKELTPNKTRRAQ 221
BLAST of mRNA_H-elongata_contig1647.4082.1 vs. uniprot
Match: A0A6U6H6A9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6H6A9_9STRA) HSP 1 Score: 165 bits (418), Expect = 1.040e-47 Identity = 75/131 (57.25%), Postives = 101/131 (77.10%), Query Frame = 1
Query: 7 EFVVKKEGEPTEAELSNHNVMKIVAQRCTDEEVNWLVWRCLGYRYETERELWTAEKVFPLWKEKYPEPPDLIGVTRVYSREVDRPVMKANQVLVRSIPREFKRSIMEQLKPIGFTGYKLDELTPNRTRRAQ 399
+F+V + G P + ELSN N++KI+ +CTD EVN LVW+CLGYR++++ E W + FP WKEKYPEPPDLIG+ R+YS+E D+P +KANQ +VRS+P + K+S+ LKP GF GY+ ELTPN+TRRAQ
Sbjct: 102 DFIVSRHGGPQKEELSNENLLKILLIKCTDLEVNTLVWKCLGYRFDSDNEKWLNTECFPKWKEKYPEPPDLIGMKRMYSKEHDQPSLKANQAIVRSVPVDNKQSLKTHLKPHGFKGYQYSELTPNKTRRAQ 232
BLAST of mRNA_H-elongata_contig1647.4082.1 vs. uniprot
Match: B8C3I7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3I7_THAPS) HSP 1 Score: 161 bits (408), Expect = 2.600e-46 Identity = 73/130 (56.15%), Postives = 100/130 (76.92%), Query Frame = 1
Query: 10 FVVKKEGEPTEAELSNHNVMKIVAQRCTDEEVNWLVWRCLGYRYETERELWTAEKVFPLWKEKYPEPPDLIGVTRVYSREVDRPVMKANQVLVRSIPREFKRSIMEQLKPIGFTGYKLDELTPNRTRRAQ 399
FV+ + G PT+ ELSN ++KIV C+D E N LVW+CLGYR++ E E W+ ++VFP WKE++P PPDLIG+ RVY REVD+P +++NQ LVRSIP + K+S+ LKP+G+ G++ ELTPN+TRRAQ
Sbjct: 91 FVLTRSGPPTKEELSNEQMLKIVKSECSDLEANTLVWKCLGYRFDEESEEWSPKEVFPNWKERFPTPPDLIGMRRVYEREVDQPSLRSNQALVRSIPPDNKQSLKTHLKPLGWKGFQYKELTPNKTRRAQ 220 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1647.4082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1647.4082.1 >prot_H-elongata_contig1647.4082.1 ID=prot_H-elongata_contig1647.4082.1|Name=mRNA_H-elongata_contig1647.4082.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp DGEFVVKKEGEPTEAELSNHNVMKIVAQRCTDEEVNWLVWRCLGYRYETEback to top mRNA from alignment at H-elongata_contig1647:7327..8689+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1647.4082.1 ID=mRNA_H-elongata_contig1647.4082.1|Name=mRNA_H-elongata_contig1647.4082.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1363bp|location=Sequence derived from alignment at H-elongata_contig1647:7327..8689+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1647:7327..8689+ >mRNA_H-elongata_contig1647.4082.1 ID=mRNA_H-elongata_contig1647.4082.1|Name=mRNA_H-elongata_contig1647.4082.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig1647:7327..8689+ (Himanthalia elongata Himel1 dioecious)back to top |