mRNA_H-elongata_contig164684.4079.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164684.4079.1
Unique NamemRNA_H-elongata_contig164684.4079.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: D7FT94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT94_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.530e-29
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 1
Query:    1 KMVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
            KMVLVCTHMSRDKRCGRAGPQV+ EM K ++ RGV  D IA+RGSSHFGGH++AGVLIIYPQGDW
Sbjct:  225 KMVLVCTHMSRDKRCGRAGPQVIGEMEKALQERGVGPDEIAVRGSSHFGGHKYAGVLIIYPQGDW 289          
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: UPI0001FE36D4 (hypothetical protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE36D4)

HSP 1 Score: 95.1 bits (235), Expect = 1.130e-21
Identity = 38/64 (59.38%), Postives = 54/64 (84.38%), Query Frame = 1
Query:    4 MVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
            +VLVCTH +RD RCGR+GPQV++++A+ +  R +  DTIA+RGSSH GGH++AGV+++YP GDW
Sbjct:  272 LVLVCTHGTRDARCGRSGPQVMDKLAELMAERSIGDDTIAVRGSSHLGGHKYAGVVVVYPPGDW 335          
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A2P6NW20_9EUKA (Altered inheritance of mitochondria protein 32 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NW20_9EUKA)

HSP 1 Score: 90.1 bits (222), Expect = 1.710e-20
Identity = 35/64 (54.69%), Postives = 52/64 (81.25%), Query Frame = 1
Query:    4 MVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
            +VLVCTH +RDKRCGR GPQV++++   +  R +S+D +A+ GSSH GGH++A V+++YP+GDW
Sbjct:  148 VVLVCTHGTRDKRCGRIGPQVVDQLTGMLSERNISSDKVAILGSSHLGGHKYAAVVVVYPEGDW 211          
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: L8H8Q7_ACACA (Ferredoxin, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8Q7_ACACA)

HSP 1 Score: 79.7 bits (195), Expect = 2.250e-16
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 1
Query:    1 KMVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
            ++VLVC H +RD RCG  GP ++    + + ARG+  D + +R SSH GGH++AGV+++YP+GDW
Sbjct:  162 ELVLVCCHNNRDTRCGAEGPIIVSAFDRLLAARGLGEDKVMVRSSSHLGGHKYAGVVVVYPRGDW 226          
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A830HKY9_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HKY9_9CHLO)

HSP 1 Score: 77.8 bits (190), Expect = 1.650e-15
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1
Query:    1 KMVLVCTHMSRDKRCGRAGPQVL---EEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
            K++L+CTH +RD RCGRAGP ++    + AK+V+A       +A+ GSSH GGH+FAGV I YP GDW
Sbjct:  202 KVILICTHKARDARCGRAGPSLVAACRDAAKEVKA------DVAVYGSSHIGGHKFAGVAIAYPAGDW 263          
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A7S1TUK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUK0_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.730e-14
Identity = 38/99 (38.38%), Postives = 49/99 (49.49%), Query Frame = 1
Query:    1 KMVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDT----------------------------------IALRGSSHFGGHRFAGVLIIYPQGDW 195
            K++LVCTH SRDKRCGRAGPQ+L  M++ +  RG+                                      + LRG SH GGH+ AGV I+YP+ DW
Sbjct:  218 KLILVCTHASRDKRCGRAGPQMLTHMSEALVKRGLGAGLPPDHPRHTHDPRGFLGAVASEISHRLAYGAPRPRVVLRGCSHIGGHKHAGVCIVYPEADW 316          
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A0M8KAU1_9CHLR (Uncharacterized protein n=2 Tax=Ardenticatenia TaxID=1382928 RepID=A0A0M8KAU1_9CHLR)

HSP 1 Score: 72.0 bits (175), Expect = 9.810e-14
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    7 VLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
            VLVC H  RD+RCGRAGP +++   + +   G+S D   +  SSH GGH+FAG +I+YP GDW
Sbjct:  121 VLVCVHAERDERCGRAGPPLVDRFWEVLDREGLS-DRYRVVASSHLGGHKFAGNIIVYPSGDW 182          
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A1S8VWB2_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VWB2_9FUNG)

HSP 1 Score: 72.0 bits (175), Expect = 3.070e-13
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    7 VLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQ-------GDW 195
            ++VCTH  RDKRCG AGP +++E  K V+  G+  + + + G SHFGGHRFAG LI+Y         GDW
Sbjct:  254 IMVCTHKKRDKRCGVAGPMLIKEFGKSVKELGMEPN-VGIFGVSHFGGHRFAGGLIVYRSFSNGDVVGDW 322          
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: F0ZNA5_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZNA5_DICPU)

HSP 1 Score: 71.2 bits (173), Expect = 4.510e-13
Identity = 27/65 (41.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query:    1 KMVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
            K + VCTH  +D+RCG  GP +++++ ++++ +G+  D I + G+SH GGH++AG L+I+P G+W
Sbjct:  216 KYIFVCTHKQKDERCGYCGPILVDQLKEEIKNKGLEND-IQVFGTSHVGGHKYAGNLLIFPPGNW 279          
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A0L0S7X3_ALLM3 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S7X3_ALLM3)

HSP 1 Score: 71.2 bits (173), Expect = 6.340e-13
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    7 VLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVST--DTIALRGSSHFGGHRFAGVLIIYPQGDW 195
            VL+C H  RD RCG +GP ++ E  + +  RG     D +A+ G+SH GGH+FAG LI+YP GDW
Sbjct:  291 VLICAHKKRDSRCGESGPILIREFHRVI-DRGFPDLHDQVAVYGTSHIGGHKFAGTLIMYPSGDW 354          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT94_ECTSI3.530e-2980.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0001FE36D41.130e-2159.38hypothetical protein n=1 Tax=Capsaspora owczarzaki... [more]
A0A2P6NW20_9EUKA1.710e-2054.69Altered inheritance of mitochondria protein 32 n=1... [more]
L8H8Q7_ACACA2.250e-1647.69Ferredoxin, putative n=1 Tax=Acanthamoeba castella... [more]
A0A830HKY9_9CHLO1.650e-1552.94Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
A0A7S1TUK0_9STRA5.730e-1438.38Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A0M8KAU1_9CHLR9.810e-1450.79Uncharacterized protein n=2 Tax=Ardenticatenia Tax... [more]
A0A1S8VWB2_9FUNG3.070e-1348.57Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
F0ZNA5_DICPU4.510e-1341.54Uncharacterized protein n=1 Tax=Dictyostelium purp... [more]
A0A0L0S7X3_ALLM36.340e-1349.23Uncharacterized protein n=2 Tax=Allomyces macrogyn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164684contigH-elongata_contig164684:563..1107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.8
Seed ortholog evalue1.5e-23
Seed eggNOG ortholog2880.D7FT94
EggNOG free text desc.Sucrase/ferredoxin-like
EggNOG OGs2CJ2D@1,2S6XF@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164684.4079.1prot_H-elongata_contig164684.4079.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164684 566..1107 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929963.13211-UTR-H-elongata_contig164684:562..5651622929963.13211-UTR-H-elongata_contig164684:562..565Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164684 563..565 +
1691679225.6771498-UTR-H-elongata_contig164684:562..5651691679225.6771498-UTR-H-elongata_contig164684:562..565Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164684 563..565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929963.1522865-CDS-H-elongata_contig164684:565..6251622929963.1522865-CDS-H-elongata_contig164684:565..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164684 566..625 +
1691679225.6898282-CDS-H-elongata_contig164684:565..6251691679225.6898282-CDS-H-elongata_contig164684:565..625Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164684 566..625 +
1622929963.169683-CDS-H-elongata_contig164684:972..11071622929963.169683-CDS-H-elongata_contig164684:972..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164684 973..1107 +
1691679225.7009273-CDS-H-elongata_contig164684:972..11071691679225.7009273-CDS-H-elongata_contig164684:972..1107Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164684 973..1107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164684.4079.1

>prot_H-elongata_contig164684.4079.1 ID=prot_H-elongata_contig164684.4079.1|Name=mRNA_H-elongata_contig164684.4079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGH
RFAGVLIIYPQGDW*
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mRNA from alignment at H-elongata_contig164684:563..1107+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164684.4079.1 ID=mRNA_H-elongata_contig164684.4079.1|Name=mRNA_H-elongata_contig164684.4079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=545bp|location=Sequence derived from alignment at H-elongata_contig164684:563..1107+ (Himanthalia elongata Himel1 dioecious)
AAGATGGTGTTGGTATGCACTCACATGTCGCGAGACAAGCGCTGCGGGCG GGCGGGACCCCAGGTATGTACCTGTATATATGTATGTATGTACCTGTATG TATGTATGTGCGTGGTATCCCTTCTCATTTAGCGAACGTATAATGTAGAC CCCTATAGCCATGGTGTGTGGTGTGTACCGGATCTTGGTTGGCTTAAGGC GGCGTAAACAAGGTGGCTTGCTGCCAATTTCTGTGCCCCATTCGTACACC CGTTGGTCAATTCCATGAAGCATCGTTGGTAGACACCTTGTTCCACCAGG TGTGCTCGTCCTGCGCGCTATTATAGATGATTGTTAGTGTCCGTACGGCT ATTATAGATGATGGAGAACGGAGATTGGCTCACCGATTGTCTGTTAACGC GGCATCGCAGGTGCTCGAGGAGATGGCTAAAGATGTCAGAGCTCGGGGCG TAAGCACTGACACAATCGCGCTGCGAGGGAGCTCGCATTTTGGGGGTCAC AGATTCGCCGGAGTGCTCATCATCTACCCCCAGGGAGATTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig164684:563..1107+

>mRNA_H-elongata_contig164684.4079.1 ID=mRNA_H-elongata_contig164684.4079.1|Name=mRNA_H-elongata_contig164684.4079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig164684:563..1107+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTTGGTATGCACTCACATGTCGCGAGACAAGCGCTGCGGGCGGGC
GGGACCCCAGATGGTGTTGGTATGCACTCACATGTCGCGAGACAAGCGCT
GCGGGCGGGCGGGACCCCAGGTGCTCGAGGAGATGGCTAAAGATGTCAGA
GCTCGGGGCGTAAGCACTGACACAATCGCGCTGCGAGGGAGCTCGCATTT
TGGGGGTCACAGATTCGCCGGAGTGCTCATCATCTACCCCCAGGGAGATT
GGTGAGTGCTCGAGGAGATGGCTAAAGATGTCAGAGCTCGGGGCGTAAGC
ACTGACACAATCGCGCTGCGAGGGAGCTCGCATTTTGGGGGTCACAGATT
CGCCGGAGTGCTCATCATCTACCCCCAGGGAGATTGGTGA
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