mRNA_H-elongata_contig164684.4079.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: D7FT94_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT94_ECTSI) HSP 1 Score: 115 bits (287), Expect = 3.530e-29 Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 1
Query: 1 KMVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
KMVLVCTHMSRDKRCGRAGPQV+ EM K ++ RGV D IA+RGSSHFGGH++AGVLIIYPQGDW
Sbjct: 225 KMVLVCTHMSRDKRCGRAGPQVIGEMEKALQERGVGPDEIAVRGSSHFGGHKYAGVLIIYPQGDW 289
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: UPI0001FE36D4 (hypothetical protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE36D4) HSP 1 Score: 95.1 bits (235), Expect = 1.130e-21 Identity = 38/64 (59.38%), Postives = 54/64 (84.38%), Query Frame = 1
Query: 4 MVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
+VLVCTH +RD RCGR+GPQV++++A+ + R + DTIA+RGSSH GGH++AGV+++YP GDW
Sbjct: 272 LVLVCTHGTRDARCGRSGPQVMDKLAELMAERSIGDDTIAVRGSSHLGGHKYAGVVVVYPPGDW 335
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A2P6NW20_9EUKA (Altered inheritance of mitochondria protein 32 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NW20_9EUKA) HSP 1 Score: 90.1 bits (222), Expect = 1.710e-20 Identity = 35/64 (54.69%), Postives = 52/64 (81.25%), Query Frame = 1
Query: 4 MVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
+VLVCTH +RDKRCGR GPQV++++ + R +S+D +A+ GSSH GGH++A V+++YP+GDW
Sbjct: 148 VVLVCTHGTRDKRCGRIGPQVVDQLTGMLSERNISSDKVAILGSSHLGGHKYAAVVVVYPEGDW 211
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: L8H8Q7_ACACA (Ferredoxin, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H8Q7_ACACA) HSP 1 Score: 79.7 bits (195), Expect = 2.250e-16 Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 1
Query: 1 KMVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
++VLVC H +RD RCG GP ++ + + ARG+ D + +R SSH GGH++AGV+++YP+GDW
Sbjct: 162 ELVLVCCHNNRDTRCGAEGPIIVSAFDRLLAARGLGEDKVMVRSSSHLGGHKYAGVVVVYPRGDW 226
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A830HKY9_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HKY9_9CHLO) HSP 1 Score: 77.8 bits (190), Expect = 1.650e-15 Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 1 KMVLVCTHMSRDKRCGRAGPQVL---EEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
K++L+CTH +RD RCGRAGP ++ + AK+V+A +A+ GSSH GGH+FAGV I YP GDW
Sbjct: 202 KVILICTHKARDARCGRAGPSLVAACRDAAKEVKA------DVAVYGSSHIGGHKFAGVAIAYPAGDW 263
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A7S1TUK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUK0_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 5.730e-14 Identity = 38/99 (38.38%), Postives = 49/99 (49.49%), Query Frame = 1
Query: 1 KMVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDT----------------------------------IALRGSSHFGGHRFAGVLIIYPQGDW 195
K++LVCTH SRDKRCGRAGPQ+L M++ + RG+ + LRG SH GGH+ AGV I+YP+ DW
Sbjct: 218 KLILVCTHASRDKRCGRAGPQMLTHMSEALVKRGLGAGLPPDHPRHTHDPRGFLGAVASEISHRLAYGAPRPRVVLRGCSHIGGHKHAGVCIVYPEADW 316
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A0M8KAU1_9CHLR (Uncharacterized protein n=2 Tax=Ardenticatenia TaxID=1382928 RepID=A0A0M8KAU1_9CHLR) HSP 1 Score: 72.0 bits (175), Expect = 9.810e-14 Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query: 7 VLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
VLVC H RD+RCGRAGP +++ + + G+S D + SSH GGH+FAG +I+YP GDW
Sbjct: 121 VLVCVHAERDERCGRAGPPLVDRFWEVLDREGLS-DRYRVVASSHLGGHKFAGNIIVYPSGDW 182
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A1S8VWB2_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VWB2_9FUNG) HSP 1 Score: 72.0 bits (175), Expect = 3.070e-13 Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 7 VLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQ-------GDW 195
++VCTH RDKRCG AGP +++E K V+ G+ + + + G SHFGGHRFAG LI+Y GDW
Sbjct: 254 IMVCTHKKRDKRCGVAGPMLIKEFGKSVKELGMEPN-VGIFGVSHFGGHRFAGGLIVYRSFSNGDVVGDW 322
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: F0ZNA5_DICPU (Uncharacterized protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZNA5_DICPU) HSP 1 Score: 71.2 bits (173), Expect = 4.510e-13 Identity = 27/65 (41.54%), Postives = 48/65 (73.85%), Query Frame = 1
Query: 1 KMVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHRFAGVLIIYPQGDW 195
K + VCTH +D+RCG GP +++++ ++++ +G+ D I + G+SH GGH++AG L+I+P G+W
Sbjct: 216 KYIFVCTHKQKDERCGYCGPILVDQLKEEIKNKGLEND-IQVFGTSHVGGHKYAGNLLIFPPGNW 279
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Match: A0A0L0S7X3_ALLM3 (Uncharacterized protein n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0S7X3_ALLM3) HSP 1 Score: 71.2 bits (173), Expect = 6.340e-13 Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 7 VLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVST--DTIALRGSSHFGGHRFAGVLIIYPQGDW 195
VL+C H RD RCG +GP ++ E + + RG D +A+ G+SH GGH+FAG LI+YP GDW
Sbjct: 291 VLICAHKKRDSRCGESGPILIREFHRVI-DRGFPDLHDQVAVYGTSHIGGHKFAGTLIMYPSGDW 354 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164684.4079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig164684.4079.1 >prot_H-elongata_contig164684.4079.1 ID=prot_H-elongata_contig164684.4079.1|Name=mRNA_H-elongata_contig164684.4079.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp MVLVCTHMSRDKRCGRAGPQVLEEMAKDVRARGVSTDTIALRGSSHFGGHback to top mRNA from alignment at H-elongata_contig164684:563..1107+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig164684.4079.1 ID=mRNA_H-elongata_contig164684.4079.1|Name=mRNA_H-elongata_contig164684.4079.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=545bp|location=Sequence derived from alignment at H-elongata_contig164684:563..1107+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig164684:563..1107+ >mRNA_H-elongata_contig164684.4079.1 ID=mRNA_H-elongata_contig164684.4079.1|Name=mRNA_H-elongata_contig164684.4079.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig164684:563..1107+ (Himanthalia elongata Himel1 dioecious)back to top |