mRNA_H-elongata_contig16464.4074.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16464.4074.1
Unique NamemRNA_H-elongata_contig16464.4074.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16464.4074.1 vs. uniprot
Match: A0A6H5KU75_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU75_9PHAE)

HSP 1 Score: 46.6 bits (109), Expect = 8.640e-5
Identity = 25/35 (71.43%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 KLGAFAGSLLFKAAVKLFEGVGPVLVICALLSLAG 105
            KLGA AGSL+FK A + + GVGPVLV+CAL+SLAG
Sbjct:  460 KLGALAGSLMFKPAAETW-GVGPVLVVCALISLAG 493
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16464.4074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KU75_9PHAE8.640e-571.43MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16464contigH-elongata_contig16464:182..286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size107
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929962.4753206-CDS-H-elongata_contig16464:181..2861622929962.4753206-CDS-H-elongata_contig16464:181..286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16464 182..286 -
1691679225.4131334-CDS-H-elongata_contig16464:181..2861691679225.4131334-CDS-H-elongata_contig16464:181..286Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16464 182..286 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16464.4074.1prot_H-elongata_contig16464.4074.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16464 182..286 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16464.4074.1

>prot_H-elongata_contig16464.4074.1 ID=prot_H-elongata_contig16464.4074.1|Name=mRNA_H-elongata_contig16464.4074.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
KLGAFAGSLLFKAAVKLFEGVGPVLVICALLSLAG
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mRNA from alignment at H-elongata_contig16464:182..286-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16464.4074.1 ID=mRNA_H-elongata_contig16464.4074.1|Name=mRNA_H-elongata_contig16464.4074.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=105bp|location=Sequence derived from alignment at H-elongata_contig16464:182..286- (Himanthalia elongata Himel1 dioecious)
AAATTGGGCGCCTTCGCTGGGAGTCTACTTTTTAAGGCGGCGGTCAAACT
CTTTGAGGGGGTCGGCCCAGTGCTCGTGATCTGCGCGCTGCTTTCCCTTG
CCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig16464:182..286-

>mRNA_H-elongata_contig16464.4074.1 ID=mRNA_H-elongata_contig16464.4074.1|Name=mRNA_H-elongata_contig16464.4074.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig16464:182..286- (Himanthalia elongata Himel1 dioecious)
AAATTGGGCGCCTTCGCTGGGAGTCTACTTTTTAAGGCGGCGGTCAAACT
CTTTGAGGGGGTCGGCCCAGTGCTCGTGATCTGCGCGCTGCTTTCCCTTG
CCGGTAAATTGGGCGCCTTCGCTGGGAGTCTACTTTTTAAGGCGGCGGTC
AAACTCTTTGAGGGGGTCGGCCCAGTGCTCGTGATCTGCGCGCTGCTTTC
CCTTGCCGGT
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