mRNA_H-elongata_contig164409.4068.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164409.4068.1
Unique NamemRNA_H-elongata_contig164409.4068.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig164409.4068.1 vs. uniprot
Match: A0A6H5JBJ7_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ7_9PHAE)

HSP 1 Score: 322 bits (825), Expect = 1.870e-108
Identity = 164/252 (65.08%), Postives = 188/252 (74.60%), Query Frame = 1 
Query:    1 MSFGVQENSWYDARECTLWISESWRLRPNNGSIITQCSNILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYTATAVADPTTGKLKPPGRGMVST*CKEAWAAIIPDVVKTCFKICGLTLALTGSEDHA*CMHNFGGGYRELLQKQRVAWEEAQPGVLLPPLQLPEVPDGESIGTNAITAAEKEIQGRLLPPTGGKESDSDVELLGYDSDLECLGVSGGGEKEGE 756
            MSFGVQE SW D REC  WIS SW+LRPNNGSII Q   ILVLDDFKCH+ E FIA L++  NT VI IPGG TPLLQPLDRMLNKQMKRLLRGKYTAY+A+AVAD  +GKLKPP RG+VST CK+AW +I P+ VKTCFKICGLTLAL GSEDHA C HNFG  YR+LL++Q   W    P V LPPL+LP+VP G    +N ITAA+KE++G+LLP     ESDS+VE+             GGG+ EGE
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIIQQRLCILVLDDFKCHKGEGFIAPLKRDANTIVIFIPGGWTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKKAWESITPETVKTCFKICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQHAVWLAEHPDVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVSEXXXXXXXXXXQGGGDAEGE 249
[Close]
BLAST of mRNA_H-elongata_contig164409.4068.1 vs. uniprot
Match: A0A6H5L8W0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8W0_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 1.630e-104
Identity = 160/252 (63.49%), Postives = 186/252 (73.81%), Query Frame = 1 
Query:    1 MSFGVQENSWYDARECTLWISESWRLRPNNGSIITQCSNILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYTATAVADPTTGKLKPPGRGMVST*CKEAWAAIIPDVVKTCFKICGLTLALTGSEDHA*CMHNFGGGYRELLQKQRVAWEEAQPGVLLPPLQLPEVPDGESIGTNAITAAEKEIQGRLLPPTGGKESDSDVELLGYDSDLECLGVSGGGEKEGE 756
            MSFGVQE SW D REC  WIS SW+ RPNNGSI+ Q   ILVLDDFKC +DE FIA L++  NT  I IPGGLTPLLQPLDR+LNKQMKR+LRGKYTAY+A+AVAD  +GKLKPP RG+VST C EAW +IIP+ VKTCFKICGLTLAL G EDHA   HNFG  YR+LL++Q   W    P   LPPL+LPEVP G     N IT A+KE++ +L+P     ES S+VE+L  DSD+E +   GGG  EGE
Sbjct:    1 MSFGVQEKSWSDQRECNGWISGSWKFRPNNGSIVQQRPCILVLDDFKCRKDEGFIAALKRDANTIAIFIPGGLTPLLQPLDRVLNKQMKRMLRGKYTAYSASAVADARSGKLKPPERGVVSTWCTEAWESIIPETVKTCFKICGLTLALDGREDHAWREHNFGEDYRDLLEEQHAVWLAEHPDATLPPLKLPEVPGGFDF--NPITGAQKEVEEKLMPYVAD-ESASEVEVLEGDSDVEVVEGQGGGGAEGE 249
[Close]
BLAST of mRNA_H-elongata_contig164409.4068.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 316 bits (810), Expect = 3.790e-103
Identity = 163/252 (64.68%), Postives = 186/252 (73.81%), Query Frame = 1 
Query:    1 MSFGVQENSWYDARECTLWISESWRLRPNNGSIITQCSNILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYTATAVADPTTGKLKPPGRGMVST*CKEAWAAIIPDVVKTCFKICGLTLALTGSEDHA*CMHNFGGGYRELLQKQRVAWEEAQPGVLLPPLQLPEVPDGESIGTNAITAAEKEIQGRLLPPTGGKESDSDVELLGYDSDLECLGVSGGGEKEGE 756
            MSFGVQE SW D REC  WIS SW+LRPNNGSI+ Q   ILVLDDFKCH+DE FIA L++  NT VI IPG LTPLLQPLDRMLNKQMKRLLR KYTAY+A+AVAD  +GKLKPP RG+VST CKEAW +  P+ VKTCF ICGLTLAL GSEDHA C HNFG  YR+LL++QR  W      V LPPL+LP+VP G    +N ITAA+KE++G+LLP     ESDS+VE+L            GGG  EGE
Sbjct:  217 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDHAWCEHNFGEDYRDLLEEQRAVWLAEHADVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVLEGXXXXXXXXXQGGGGAEGE 465
[Close]
BLAST of mRNA_H-elongata_contig164409.4068.1 vs. uniprot
Match: A0A6H5KQK9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQK9_9PHAE)

HSP 1 Score: 310 bits (793), Expect = 3.470e-102
Identity = 159/251 (63.35%), Postives = 184/251 (73.31%), Query Frame = 1 
Query:    1 MSFGVQENSWYDARECTLWISESWRLRPNNGSIITQCSNILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYTATAVADPTTGKLKPPGRGMVST*CKEAWAAIIPDVVKTCFKICGLTLALTGSEDHA*CMHNFGGGYRELLQKQRVAWEEAQPGVLLPPLQLPEVPDGESIGTNAITAAEKEIQGRLLPPTGGKESDSDVELLGYDSDLECLGVSGGGEKEG 753
            MSFGVQE SW D REC  WIS SW+LRPNNGSI+ Q   ILVLDD KCH+ E FIA L++  NT VI IPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY+ +AVAD  +GKLKPP RG+VST CKEAW +I P+ VK+CFKICGLTLAL GSEDHA C H+FG    +LL++Q   W    P V LPPL+LP+VP G    +N ITAA+KE++G+LLP     ESDS+VE+L            GGG  EG
Sbjct:   98 MSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDVKCHKYEGFIAALKRDANTMVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSTSAVADARSGKLKPPERGVVSTWCKEAWESITPETVKSCFKICGLTLALDGSEDHAWCDHDFGEDSHDLLEEQHAVWLAEHPDVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLPYVAD-ESDSEVEVLEGXXXXXXXXXQGGGGAEG 345
[Close]
BLAST of mRNA_H-elongata_contig164409.4068.1 vs. uniprot
Match: A0A6H5KRZ1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ1_9PHAE)

HSP 1 Score: 317 bits (811), Expect = 6.660e-102
Identity = 158/231 (68.40%), Postives = 178/231 (77.06%), Query Frame = 1 
Query:    1 MSFGVQENSWYDARECTLWISESWRLRPNNGSIITQCSNILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYTATAVADPTTGKLKPPGRGMVST*CKEAWAAIIPDVVKTCFKICGLTLALTGSEDHA*CMHNFGGGYRELLQKQRVAWEEAQPGVLLPPLQLPEVPDGESIGTNAITAAEKEIQGRLLPPTGGKESDSDVEL 693
            MSFGVQE SW D REC LWI +SW+LRPNNGSI+ Q   ILVLDDFKCH+D+ FIA L++  NT VI IPGGLTPLLQPLDRMLNKQMKRLLRG YTA+TA A  DP TGKL PPGRG V+T CK AWA+I P+  KTCFKICGLTLAL GSEDHA C+HNFG GYRELL++QRV W    P V LPPLQLP+VP  ES   N I AA KE++  LLP    +  DSD+E+
Sbjct:  337 MSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETAKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVP-AESTA-NHIEAAAKELEAGLLP----RGDDSDIEI 561
[Close]
BLAST of mRNA_H-elongata_contig164409.4068.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 313 bits (803), Expect = 8.750e-101
Identity = 157/231 (67.97%), Postives = 178/231 (77.06%), Query Frame = 1 
Query:    1 MSFGVQENSWYDARECTLWISESWRLRPNNGSIITQCSNILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYTATAVADPTTGKLKPPGRGMVST*CKEAWAAIIPDVVKTCFKICGLTLALTGSEDHA*CMHNFGGGYRELLQKQRVAWEEAQPGVLLPPLQLPEVPDGESIGTNAITAAEKEIQGRLLPPTGGKESDSDVEL 693
            MSFGVQE SW D RE  LWI +SW+LRPNNGS++ Q   ILVLDDFKCH+D+ FIA L++  NT VI IPGGLTPLLQPLDRMLNKQMKRLLRG YTA+TA A  DP TGKL PPGRG V+T CK AWA+I P+ VKTCFKICGLTLAL GSEDHA C+HNFG GYRELL++QRV W    P V LPPLQLP+VP  ES   N I AA KE++  LLP    +  DSD+E+
Sbjct:  330 MSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAHTAKAARDPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPPLQLPKVP-AESTA-NHIEAAAKELEAGLLP----RGDDSDIEI 554
[Close]
BLAST of mRNA_H-elongata_contig164409.4068.1 vs. uniprot
Match: A0A6H5J8R4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8R4_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 7.680e-99
Identity = 148/218 (67.89%), Postives = 171/218 (78.44%), Query Frame = 1 
Query:    1 MSFGVQENSWYDARECTLWISESWRLRPNNGSIITQCSNILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYTATAVADPTTGKLKPPGRGMVST*CKEAWAAIIPDVVKTCFKICGLTLALTGSEDHA*CMHNFGGGYRELLQKQRVAWEEAQPGVLLPPLQLPEVPDGESIGTNAITAAEKEIQGRLLP 654
            MSFGVQE SW D REC  W S SW+LRPNNGSI+ Q   ILVLDDFKCH+DE FIA L++  NT VI IPGGLTPLLQPLD  LNKQMKRLLRGK+TAY+++AVAD  +GKLKPP RG+VST CKE W +I P+ VKTCFKICGLTLAL GSEDHA C HNFG  YR+LL++Q   W    P V LPPL+LP+VP G    +N ITAA+KE++G+LLP
Sbjct:   62 MSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLD--LNKQMKRLLRGKHTAYSSSAVADARSGKLKPPERGIVSTWCKEEWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPGG--FDSNPITAAQKEVEGKLLP 275
[Close]
BLAST of mRNA_H-elongata_contig164409.4068.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 4.580e-97
Identity = 155/227 (68.28%), Postives = 172/227 (75.77%), Query Frame = 1 
Query:   10 GVQENSWYDARECTLWISESWRLRPNNGSIITQCSNILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYTATAVADPTTGKLKPPGRGMVST*CKEAWAAIIPDVVKTCFKICGLTLALTGSEDHA*CMHNFGGGYRELLQKQRVAWEEAQPGVLLPPLQLPEVPDGESIGTNAITAAEKEIQGRLLPPTGGKESDSDVE 690
            GVQE SW D REC LWI +SW+LRPNNGSI+ Q   ILVLDDFKCH+D+ FIA L K  NT VI IPGGLTPLLQPLDRMLNKQMKRLLRG YTA TA A  DP TG L PPGRG V+T CK AWA+I P+ VKTCFKICGLTLAL GSEDHA C+HNFG GYRELL++QRV W    P V LP LQLP+VP  ES   N I AA KE++  LLP   G +SD ++E
Sbjct:  370 GVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTANTAKAARDPKTGNLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDHAWCLHNFGDGYRELLEQQRVEWLAEHPNVTLPTLQLPKVP-AESTA-NHIEAAAKELEAGLLPC--GDDSDIEIE 592
[Close]
BLAST of mRNA_H-elongata_contig164409.4068.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 8.230e-95
Identity = 159/285 (55.79%), Postives = 182/285 (63.86%), Query Frame = 1 
Query:    1 MSFGVQENSWYDARECTLWISESWRLRPNNGSIITQCSNILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYTATAVADPTTGKLKPPGRGMVST*CKEAWAAIIPDVVKTCFKICGLTLALTGSEDHA*CMHNFGGGYRELLQKQRVAWEEAQPGVLLPPLQLPEVPDGE---------------------------------SIGTNAITAAEKEIQGRLLPPTGGKESDSDVELLGYDSDLECLGVSGGGEKEGE 756
            MSFGVQE SW D REC  W S SW+LRPNNGSI+ Q   ILVLDDFKCH+DE FIA L++  NT VI IPGGLTPLLQPLDRMLNKQ KRLLR KYTAY+A+A  D  +GKLKPP RG+VST CK AW +I P+ VKTCFKICGLTLAL GSEDHA C HNFG  YR+LL++Q   W    P V LPPL+LP+VP                                       +N I AA+KE++G+LLP     ESDS+VE+L            GGG  EGE
Sbjct:  151 MSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASAT-DARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDHAWCAHNFGEDYRDLLEEQHAVWLAEHPNVTLPPLKLPKVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGFDSNPIMAAQKEVEGKLLPYVPD-ESDSEVEVLEGXXXXXXXXXQGGGGAEGE 433
[Close]
BLAST of mRNA_H-elongata_contig164409.4068.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 303 bits (777), Expect = 2.140e-92
Identity = 163/299 (54.52%), Postives = 192/299 (64.21%), Query Frame = 1 
Query:    1 MSFGVQENSWYDARECTLWISESWRLRPNNGSIITQCSNILVLDDFKCHRDEAFIADLRKRCNTSVILIPGGLTPLLQPLDRMLNKQMKRLLRGKY------------------------------------------------TAYTATAVADPTTGKLKPPGRGMVST*CKEAWAAIIPDVVKTCFKICGLTLALTGSEDHA*CMHNFGGGYRELLQKQRVAWEEAQPGVLLPPLQLPEVPDGESIGTNAITAAEKEIQGRLLPPTGGKESDSDVELLGYDSDLECL-----GVSGG 738
            M F VQE SW DARECTLW+SESWR RPN+GS+I Q  +ILVLDDF+CHR E+F+ DLR+R NT+VILIPGGLTPLLQPLDRMLNK+MKRL+RG                                                  T Y A+A+ADP TGKL+PPGRG+VST  KE+WAAI P+ VK CFK+CGLTLAL GSED A   HNFG GYRE+L +Q   WE   PGV LPPLQLPEV    + G N I  AEKE+  +LLPP G  +SD +VE++  DSD+E L     G +GG
Sbjct:  286 MFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQYMASAIADPKTGKLQPPGRGLVSTRYKESWAAITPETVKMCFKVCGLTLALDGSEDDAWGTHNFGEGYREVLVQQHAEWEAQHPGVTLPPLQLPEV--SSAPGANPIATAEKEVTAKLLPPEG--DSDDEVEIIDGDSDVELLDGPWVGAAGG 580
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164409.4068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBJ7_9PHAE1.870e-10865.08DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5L8W0_9PHAE1.630e-10463.49DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE3.790e-10364.68DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KQK9_9PHAE3.470e-10263.35DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ1_9PHAE6.660e-10268.40DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE8.750e-10167.97DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5J8R4_9PHAE7.680e-9967.89DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KYG9_9PHAE4.580e-9768.28DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE8.230e-9555.79DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE2.140e-9254.52Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164409contigH-elongata_contig164409:390..1148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size759
Cds size285
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929961.9044461-UTR-H-elongata_contig164409:389..8631622929961.9044461-UTR-H-elongata_contig164409:389..863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164409 390..863 +
1691679225.1743193-UTR-H-elongata_contig164409:389..8631691679225.1743193-UTR-H-elongata_contig164409:389..863Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164409 390..863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929961.9170766-CDS-H-elongata_contig164409:863..11481622929961.9170766-CDS-H-elongata_contig164409:863..1148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164409 864..1148 +
1691679225.1853085-CDS-H-elongata_contig164409:863..11481691679225.1853085-CDS-H-elongata_contig164409:863..1148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164409 864..1148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164409.4068.1prot_H-elongata_contig164409.4068.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164409 864..1148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164409.4068.1

>prot_H-elongata_contig164409.4068.1 ID=prot_H-elongata_contig164409.4068.1|Name=mRNA_H-elongata_contig164409.4068.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=95bp
MHNFGGGYRELLQKQRVAWEEAQPGVLLPPLQLPEVPDGESIGTNAITAA
EKEIQGRLLPPTGGKESDSDVELLGYDSDLECLGVSGGGEKEGE*
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mRNA from alignment at H-elongata_contig164409:390..1148+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164409.4068.1 ID=mRNA_H-elongata_contig164409.4068.1|Name=mRNA_H-elongata_contig164409.4068.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at H-elongata_contig164409:390..1148+ (Himanthalia elongata Himel1 dioecious)
ATGTCGTTTGGTGTGCAGGAGAATAGCTGGTATGACGCGCGGGAGTGCAC
CCTTTGGATCTCGGAGAGCTGGAGGCTTCGCCCCAACAACGGAAGCATCA
TCACGCAGTGCTCGAACATCCTAGTGTTGGACGACTTCAAGTGCCACCGT
GACGAGGCCTTCATCGCCGACCTCCGGAAGAGGTGCAACACCAGCGTCAT
CCTGATCCCGGGCGGGTTGACTCCTCTCCTACAGCCGCTGGACCGCATGC
TCAACAAGCAGATGAAGCGGCTACTGCGGGGGAAGTACACCGCCTACACA
GCCACAGCGGTTGCCGACCCAACTACGGGCAAGCTGAAGCCGCCGGGCCG
TGGGATGGTGTCCACGTGATGCAAGGAGGCGTGGGCAGCCATCATCCCCG
ACGTGGTCAAAACTTGCTTCAAGATCTGCGGTCTTACGCTTGCGCTTACC
GGCAGCGAGGACCACGCCTAGTGCATGCACAACTTCGGAGGGGGTTACCG
CGAGCTGCTCCAGAAGCAGCGTGTTGCGTGGGAGGAAGCACAACCCGGCG
TTTTGCTGCCCCCGCTCCAGCTACCAGAGGTACCCGACGGCGAGTCAATC
GGCACCAACGCCATCACGGCTGCAGAGAAGGAGATTCAAGGACGTCTGTT
ACCTCCTACCGGTGGGAAGGAAAGCGACAGCGATGTGGAGCTTCTGGGAT
ATGACAGCGATCTAGAGTGCTTGGGCGTGTCGGGGGGTGGGGAGAAGGAA
GGAGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig164409:390..1148+

>mRNA_H-elongata_contig164409.4068.1 ID=mRNA_H-elongata_contig164409.4068.1|Name=mRNA_H-elongata_contig164409.4068.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=570bp|location=Sequence derived from alignment at H-elongata_contig164409:390..1148+ (Himanthalia elongata Himel1 dioecious)
ATGCACAACTTCGGAGGGGGTTACCGCGAGCTGCTCCAGAAGCAGCGTGT
TGCGTGGGAGGAAGCACAACCCGGCGTTTTGCTGCCCCCGCTCCAGCTAC
CAGAGGTACCCGACGGCGAGTCAATCGGCACCAACGCCATCACGGCTGCA
GAGAAGGAGATTCAAGGACGTCTGTTACCTCCTACCGGTGGGAAGGAAAG
CGACAGCGATGTGGAGCTTCTGGGATATGACAGCGATCTAGAGTGCTTGG
GCGTGTCGGGGGGTGGGGAGAAGGAAGGAGAGTAGATGCACAACTTCGGA
GGGGGTTACCGCGAGCTGCTCCAGAAGCAGCGTGTTGCGTGGGAGGAAGC
ACAACCCGGCGTTTTGCTGCCCCCGCTCCAGCTACCAGAGGTACCCGACG
GCGAGTCAATCGGCACCAACGCCATCACGGCTGCAGAGAAGGAGATTCAA
GGACGTCTGTTACCTCCTACCGGTGGGAAGGAAAGCGACAGCGATGTGGA
GCTTCTGGGATATGACAGCGATCTAGAGTGCTTGGGCGTGTCGGGGGGTG
GGGAGAAGGAAGGAGAGTAG
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