mRNA_H-elongata_contig164219.4060.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164219.4060.1
Unique NamemRNA_H-elongata_contig164219.4060.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig164219.4060.1 vs. uniprot
Match: D8LDX8_ECTSI (Kinesin motor domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX8_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 6.550e-55
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:    1 QRKTAATLVNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAKSARARETGYIHQSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE 309
            QRKTAATL+NKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAK+ RARE G I+QSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE
Sbjct:  197 QRKTAATLMNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAKNVRAREAGNINQSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE 299
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BLAST of mRNA_H-elongata_contig164219.4060.1 vs. uniprot
Match: A0A836CEW9_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEW9_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.190e-51
Identity = 92/103 (89.32%), Postives = 97/103 (94.17%), Query Frame = 1 
Query:    1 QRKTAATLVNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAKSARARETGYIHQSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE 309
            QR+TAATL+NKNSSRSHSIFTLKIMIKE +PDGQEVMRNGQLNLVDLAGSECVGRSGA   RARE G I+QSLLTLGRVITALVEHHPH+PYRDSKLTRLLQE
Sbjct:  161 QRRTAATLMNKNSSRSHSIFTLKIMIKELLPDGQEVMRNGQLNLVDLAGSECVGRSGATQNRAREAGNINQSLLTLGRVITALVEHHPHIPYRDSKLTRLLQE 263
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BLAST of mRNA_H-elongata_contig164219.4060.1 vs. uniprot
Match: A0A812SSK3_SYMMI (Kinesin-like protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SSK3_SYMMI)

HSP 1 Score: 167 bits (424), Expect = 4.140e-48
Identity = 85/103 (82.52%), Postives = 95/103 (92.23%), Query Frame = 1 
Query:    1 QRKTAATLVNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAKSARARETGYIHQSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE 309
            QR+TAATL NKNSSRSHSIFTLKIMIKE   +G+EV+R+GQLNLVDLAGSECVGRSGA +ARARE G I+QSLLTLGRVITALV+HH H+PYRDSKLTR+LQE
Sbjct:  137 QRQTAATLCNKNSSRSHSIFTLKIMIKETNVEGEEVVRHGQLNLVDLAGSECVGRSGATNARAREAGSINQSLLTLGRVITALVDHHGHIPYRDSKLTRILQE 239
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BLAST of mRNA_H-elongata_contig164219.4060.1 vs. uniprot
Match: A0A4D9DG63_9STRA (Kinesin motor domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DG63_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.770e-42
Identity = 79/102 (77.45%), Postives = 89/102 (87.25%), Query Frame = 1 
Query:    4 RKTAATLVNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAKSARARETGYIHQSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE 309
            R+TAATL NKNSSRSHS+FTLK++IKE    G+E +R GQLNLVDLAGSEC+GRSGAK+ RARE G I+QSLLTLGR ITAL E HPH+PYRDSKLTRLLQE
Sbjct:  226 RQTAATLCNKNSSRSHSVFTLKVVIKETNGSGEEEVRAGQLNLVDLAGSECIGRSGAKNERAREAGNINQSLLTLGRCITALTEGHPHIPYRDSKLTRLLQE 327
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BLAST of mRNA_H-elongata_contig164219.4060.1 vs. uniprot
Match: A0A7S1TIM7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIM7_9RHOD)

HSP 1 Score: 147 bits (370), Expect = 1.910e-42
Identity = 72/103 (69.90%), Postives = 90/103 (87.38%), Query Frame = 1 
Query:    1 QRKTAATLVNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAKSARARETGYIHQSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE 309
            +RKTA TL+N  SSRSHS+FT+ I+IKE  PDG+++++ G+LNLVDLAGSE +G+SGA++ RARE G I+ SLLTLGRVIT+LVE HPH+PYRDSKLTRLLQE
Sbjct:   85 KRKTAETLMNACSSRSHSVFTITILIKEATPDGEDLLKIGKLNLVDLAGSENIGKSGAQNHRAREAGNINTSLLTLGRVITSLVERHPHIPYRDSKLTRLLQE 187
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BLAST of mRNA_H-elongata_contig164219.4060.1 vs. uniprot
Match: L1I6P5_GUITC (Kinesin-like protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I6P5_GUITC)

HSP 1 Score: 148 bits (374), Expect = 3.090e-41
Identity = 77/103 (74.76%), Postives = 85/103 (82.52%), Query Frame = 1 
Query:    1 QRKTAATLVNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAKSARARETGYIHQSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE 309
            QR TA TL NK SSRSH IFTLKI +KE   D +EV++ GQLNLVDLAGSECVGRSGA   R +E G I+QSLLTLGRVITALVEH PHVPYR+SKLTRLLQ+
Sbjct:  209 QRHTAETLCNKQSSRSHQIFTLKIFMKEKTLDEEEVIKTGQLNLVDLAGSECVGRSGALGDRKKEAGQINQSLLTLGRVITALVEHQPHVPYRESKLTRLLQD 311
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BLAST of mRNA_H-elongata_contig164219.4060.1 vs. uniprot
Match: F0W4U7_9STRA (Kinesinlike protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4U7_9STRA)

HSP 1 Score: 153 bits (386), Expect = 5.380e-41
Identity = 76/102 (74.51%), Postives = 92/102 (90.20%), Query Frame = 1 
Query:    4 RKTAATLVNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAKSARARETGYIHQSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE 309
            R T+ TL+N+NSSRSHSIFT++I  KE  P G+++++ GQLNLVDLAGSECVGRSGA++ARARE G I+QSLLTLGRVITALV++HPH+PYRDSKLTRLLQE
Sbjct:  251 RVTSETLMNENSSRSHSIFTIRIHSKEHNPAGEDLLKIGQLNLVDLAGSECVGRSGARNARAREAGNINQSLLTLGRVITALVDNHPHIPYRDSKLTRLLQE 352
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BLAST of mRNA_H-elongata_contig164219.4060.1 vs. uniprot
Match: A0A024GEV0_9STRA (Kinesin motor domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GEV0_9STRA)

HSP 1 Score: 152 bits (384), Expect = 9.990e-41
Identity = 75/100 (75.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:   10 TAATLVNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAKSARARETGYIHQSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE 309
            T+ TL+N+NSSRSHSIFT++I  KE  P G+++++ GQLNLVDLAGSECVGRSGA++ARARE G I+QSLLTLGRVITALV++HPH+PYRDSKLTRLLQE
Sbjct:  200 TSETLMNENSSRSHSIFTVRIHSKEHNPAGEDLLKIGQLNLVDLAGSECVGRSGARNARAREAGNINQSLLTLGRVITALVDNHPHIPYRDSKLTRLLQE 299
[Close]
BLAST of mRNA_H-elongata_contig164219.4060.1 vs. uniprot
Match: M2Y2E1_GALSU (Kinesin family member isoform 2 n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y2E1_GALSU)

HSP 1 Score: 150 bits (380), Expect = 3.470e-40
Identity = 74/103 (71.84%), Postives = 92/103 (89.32%), Query Frame = 1 
Query:    1 QRKTAATLVNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAKSARARETGYIHQSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE 309
            +R+TA TL+NK SSRSHSIF++ I IKE  P+G+++++ G+LNLVDLAGSE +GRSGA++ RARE G I+QSLLTLGRVIT+LVEHHPH+PYRDSKLTRLLQE
Sbjct:  253 KRRTAETLMNKYSSRSHSIFSITIHIKESTPEGEDLLKVGKLNLVDLAGSENIGRSGAQNMRAREAGNINQSLLTLGRVITSLVEHHPHIPYRDSKLTRLLQE 355
[Close]
BLAST of mRNA_H-elongata_contig164219.4060.1 vs. uniprot
Match: A0A7S3VHJ8_DUNTE (Hypothetical protein (Fragment) n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3VHJ8_DUNTE)

HSP 1 Score: 139 bits (350), Expect = 4.250e-40
Identity = 72/103 (69.90%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:    1 QRKTAATLVNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGSECVGRSGAKSARARETGYIHQSLLTLGRVITALVEHHPHVPYRDSKLTRLLQE 309
            +R+TAATL+N  SSRSHSIFT+ I +KE    G++V++ G+LNLVDLAGSE + RSGAK  RARE G I+QSLLTLGRVITALVEH  HVPYRDSKLTRLL++
Sbjct:   51 KRRTAATLLNNRSSRSHSIFTITIHMKETTAAGEDVVKVGKLNLVDLAGSENISRSGAKDGRAREAGSINQSLLTLGRVITALVEHSGHVPYRDSKLTRLLRD 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164219.4060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDX8_ECTSI6.550e-5594.17Kinesin motor domain-containing protein (Fragment)... [more]
A0A836CEW9_9STRA2.190e-5189.32P-loop containing nucleoside triphosphate hydrolas... [more]
A0A812SSK3_SYMMI4.140e-4882.52Kinesin-like protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A4D9DG63_9STRA1.770e-4277.45Kinesin motor domain-containing protein n=2 Tax=Mo... [more]
A0A7S1TIM7_9RHOD1.910e-4269.90Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
L1I6P5_GUITC3.090e-4174.76Kinesin-like protein n=1 Tax=Guillardia theta (str... [more]
F0W4U7_9STRA5.380e-4174.51Kinesinlike protein putative n=1 Tax=Albugo laibac... [more]
A0A024GEV0_9STRA9.990e-4175.00Kinesin motor domain-containing protein n=2 Tax=Al... [more]
M2Y2E1_GALSU3.470e-4071.84Kinesin family member isoform 2 n=2 Tax=Galdieria ... [more]
A0A7S3VHJ8_DUNTE4.250e-4069.90Hypothetical protein (Fragment) n=1 Tax=Dunaliella... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164219contigH-elongata_contig164219:196..1124 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score194.1
Seed ortholog evalue3.2e-47
Seed eggNOG ortholog2880.D8LDX8
KEGG koko:K10398,ko:K14400
KEGG Pathwayko03015,map03015
GOsGO:0000226,GO:0000278,GO:0000281,GO:0000902,GO:0000910,GO:0000911,GO:0003674,GO:0003774,GO:0003777,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005819,GO:0005856,GO:0005871,GO:0005874,GO:0005875,GO:0005886,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007049,GO:0007051,GO:0007052,GO:0008150,GO:0008574,GO:0009653,GO:0009826,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0016049,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0030865,GO:0031122,GO:0032502,GO:0032506,GO:0032989,GO:0032991,GO:0040007,GO:0042623,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043622,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048589,GO:0048856,GO:0048869,GO:0051301,GO:0060560,GO:0061640,GO:0071840,GO:0071944,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1902410,GO:1902850,GO:1903047,GO:1990939
EggNOG free text desc.ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsCOG5059@1,KOG0243@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.8855038-CDS-H-elongata_contig164219:195..3411622929960.8855038-CDS-H-elongata_contig164219:195..341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164219 196..341 +
1691679224.7743483-CDS-H-elongata_contig164219:195..3411691679224.7743483-CDS-H-elongata_contig164219:195..341Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164219 196..341 +
1622929960.90073-CDS-H-elongata_contig164219:961..11241622929960.90073-CDS-H-elongata_contig164219:961..1124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164219 962..1124 +
1691679224.7847722-CDS-H-elongata_contig164219:961..11241691679224.7847722-CDS-H-elongata_contig164219:961..1124Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164219 962..1124 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164219.4060.1prot_H-elongata_contig164219.4060.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164219 196..1124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164219.4060.1

>prot_H-elongata_contig164219.4060.1 ID=prot_H-elongata_contig164219.4060.1|Name=mRNA_H-elongata_contig164219.4060.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
QRKTAATLVNKNSSRSHSIFTLKIMIKECMPDGQEVMRNGQLNLVDLAGS
ECVGRSGAKSARARETGYIHQSLLTLGRVITALVEHHPHVPYRDSKLTRL
LQE
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mRNA from alignment at H-elongata_contig164219:196..1124+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164219.4060.1 ID=mRNA_H-elongata_contig164219.4060.1|Name=mRNA_H-elongata_contig164219.4060.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=929bp|location=Sequence derived from alignment at H-elongata_contig164219:196..1124+ (Himanthalia elongata Himel1 dioecious)
CAACGGAAGACCGCCGCGACCCTGGTGAACAAAAACTCATCAAGGAGTCA
CTCGATCTTTACTCTTAAGATAATGATCAAGGAGTGCATGCCCGATGGAC
AGGAGGTGATGAGGAACGGCCAGCTCAACCTCGTCGACCTCGCAGGGTAA
GAGACGAAGCGAATCTTGTTGTTGACGTGAGGACGACGGCGACTGCCACA
CACGCGCATGCTAGTCATTATGTGTGTGTGTGTGTATGTATAGCGGCACA
TTCCGGACCTGCTATGCTAGTCATTGTGTGTGCGTAAGTGGATTGGTCGA
ACCAGAATCGATCCTGCTACTGTACTGTACTTATGTAATCCCACCATGTA
GGTTTATAGCTGCACTCAGTCCCAATTAAGCATGAAATATGGAATGGGTT
TGCTTTAAAAGGAGTAACGCAGTCGATTGTTGGGTGAGGAACATAGTGAG
CATGAATCCTGTTGAACCGTTTCTTCGAGTAGCCCCGCCCCCCAATGATC
TTAGAGGTATTATAGTACAGTACAGTACATCATTCAAAGTTTGAACGCCT
CTCCCCTCACAGCTAGTCATTGTGTGACGATTTTGTGCTCAAAGGTAGTA
ATGTACACATTCTAACCTGACGATAGACGGTTCCCTGGACTATACCTTTT
ATGGAGCTAAGAAGGGTTTGAATTATATGATAAGAGCTAAAACAAATCGC
TAACTAACCGATGGTCGGTCCTCTTGACCGTCTTGATACCTGCCGTCAAT
ACTGTCTCATGCACAGATCGGAGTGCGTGGGCCGCTCTGGCGCAAAATCC
GCCCGCGCGCGAGAGACCGGTTACATACACCAGAGTCTTCTGACTCTGGG
GCGGGTCATCACGGCACTCGTGGAGCACCACCCCCACGTCCCCTACCGCG
ACTCCAAGCTAACCCGCCTGCTGCAGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig164219:196..1124+

>mRNA_H-elongata_contig164219.4060.1 ID=mRNA_H-elongata_contig164219.4060.1|Name=mRNA_H-elongata_contig164219.4060.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig164219:196..1124+ (Himanthalia elongata Himel1 dioecious)
CAACGGAAGACCGCCGCGACCCTGGTGAACAAAAACTCATCAAGGAGTCA
CTCGATCTTTACTCTTAAGATAATGATCAAGGAGTGCATGCCCGATGGAC
AGGAGGTGATGAGGAACGGCCAGCTCAACCTCGTCGACCTCGCAGGCAAC
GGAAGACCGCCGCGACCCTGGTGAACAAAAACTCATCAAGGAGTCACTCG
ATCTTTACTCTTAAGATAATGATCAAGGAGTGCATGCCCGATGGACAGGA
GGTGATGAGGAACGGCCAGCTCAACCTCGTCGACCTCGCAGGATCGGAGT
GCGTGGGCCGCTCTGGCGCAAAATCCGCCCGCGCGCGAGAGACCGGTTAC
ATACACCAGAGTCTTCTGACTCTGGGGCGGGTCATCACGGCACTCGTGGA
GCACCACCCCCACGTCCCCTACCGCGACTCCAAGCTAACCCGCCTGCTGC
AGGAGATCGGAGTGCGTGGGCCGCTCTGGCGCAAAATCCGCCCGCGCGCG
AGAGACCGGTTACATACACCAGAGTCTTCTGACTCTGGGGCGGGTCATCA
CGGCACTCGTGGAGCACCACCCCCACGTCCCCTACCGCGACTCCAAGCTA
ACCCGCCTGCTGCAGGAG
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