mRNA_H-elongata_contig164209.4058.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164209.4058.1
Unique NamemRNA_H-elongata_contig164209.4058.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig164209.4058.1 vs. uniprot
Match: D7FLY4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLY4_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.190e-23
Identity = 49/70 (70.00%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 SVQMVYGNQQVIDALASFPLAVDEERLPGVYQLAPTTKASMGNTAYLIVRPEKGNIMIDVPRYAGGTGGQ 210
            S++++ G++QVI AL SFPL VDEERLPG+YQL PTT+ SMGNT YLIVRP KGNIMIDVPRY   T  Q
Sbjct:   70 SIRVMRGDRQVIKALESFPLPVDEERLPGIYQLGPTTRESMGNTPYLIVRPGKGNIMIDVPRYLEQTADQ 139
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BLAST of mRNA_H-elongata_contig164209.4058.1 vs. uniprot
Match: A0A1Y1IAW0_KLENI (Metallo-beta-lactamase family protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IAW0_KLENI)

HSP 1 Score: 58.9 bits (141), Expect = 1.720e-8
Identity = 27/55 (49.09%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:   25 QQVIDALASFPLAVDEERLPGVYQLAPTTKASMGNTAYLIVRPEKGNIMIDVPRY 189
            + + DA  +FPLA+D E LPGVY     ++ S G T+Y + RPE+GNI+ID PR+
Sbjct:  169 KDIKDAQNTFPLAIDPETLPGVYHSGYHSENSYGATSYFVHRPERGNILIDSPRF 223
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BLAST of mRNA_H-elongata_contig164209.4058.1 vs. uniprot
Match: A0A834H1T3_RHOSS (Lactamase_B domain-containing protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834H1T3_RHOSS)

HSP 1 Score: 58.2 bits (139), Expect = 3.230e-8
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 SVQMVYGNQQVIDALASFPLAVDEERLPGVYQLAPTTKASMGNTAYLIVRPEKGNIMIDVPRY 189
            S++    +Q +++A  +FP+ ++E+R+PGVY     +  S G  +YLI+RPE GNI++D PRY
Sbjct:  146 SIRTEKPDQDILEAQKTFPIQINEQRIPGVYHCGCHSDKSYGAASYLIIRPE-GNILVDSPRY 207
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BLAST of mRNA_H-elongata_contig164209.4058.1 vs. uniprot
Match: A0A1R3GLX0_COCAP (CASP-like protein n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3GLX0_COCAP)

HSP 1 Score: 58.2 bits (139), Expect = 3.290e-8
Identity = 27/53 (50.94%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   31 VIDALASFPLAVDEERLPGVYQLAPTTKASMGNTAYLIVRPEKGNIMIDVPRY 189
            ++DA  +FP+ +DE++LPGVY     ++ S G T+YLIV PE GNI+ID PR+
Sbjct:  136 ILDAQKTFPIPIDEKKLPGVYHCGYHSEKSYGATSYLIVHPE-GNILIDSPRF 187
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BLAST of mRNA_H-elongata_contig164209.4058.1 vs. uniprot
Match: A0A5J4ZJ65_9ASTE (Lactamase_B domain-containing protein n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZJ65_9ASTE)

HSP 1 Score: 57.0 bits (136), Expect = 7.980e-8
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:   31 VIDALASFPLAVDEERLPGVYQLAPTTKASMGNTAYLIVRPEKGNIMIDVPRY 189
            ++D   +FP+ ++E+R+PGVY     ++ S G T+YLIV PE GNI+ID PRY
Sbjct:  130 ILDVQKTFPIPINEQRIPGVYHCGYHSEKSYGATSYLIVHPE-GNILIDSPRY 181
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BLAST of mRNA_H-elongata_contig164209.4058.1 vs. uniprot
Match: A0A7N0T539_KALFE (Lactamase_B domain-containing protein n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0T539_KALFE)

HSP 1 Score: 56.2 bits (134), Expect = 1.520e-7
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:   49 SFPLAVDEERLPGVYQLAPTTKASMGNTAYLIVRPEKGNIMIDVPRYA 192
            +FP+A+D E++PGVY     +K S G  +YLIV PE GNI++D PRYA
Sbjct:  143 TFPIAIDSEKIPGVYHCGYHSKFSYGAASYLIVHPE-GNILVDSPRYA 189
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BLAST of mRNA_H-elongata_contig164209.4058.1 vs. uniprot
Match: UPI000E6F87F1 (uncharacterized protein LOC113297217 isoform X2 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F87F1)

HSP 1 Score: 55.5 bits (132), Expect = 2.230e-7
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   31 VIDALASFPLAVDEERLPGVYQLAPTTKASMGNTAYLIVRPEKGNIMIDVPRY 189
            +++   +FPL +DE+R+PGVY     ++AS G T+Y I  P+ GNI++D PRY
Sbjct:   49 ILEVQETFPLPIDEQRIPGVYHCGYHSEASYGATSYFITHPD-GNILVDSPRY 100
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BLAST of mRNA_H-elongata_contig164209.4058.1 vs. uniprot
Match: A0A4Y7KA17_PAPSO (Lactamase_B domain-containing protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7KA17_PAPSO)

HSP 1 Score: 55.5 bits (132), Expect = 2.780e-7
Identity = 24/53 (45.28%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   31 VIDALASFPLAVDEERLPGVYQLAPTTKASMGNTAYLIVRPEKGNIMIDVPRY 189
            +++   +FPL +DE+R+PGVY     ++AS G T+Y I  P+ GNI++D PRY
Sbjct:  110 ILEVQETFPLPIDEQRIPGVYHCGYHSEASYGATSYFITHPD-GNILVDSPRY 161
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BLAST of mRNA_H-elongata_contig164209.4058.1 vs. uniprot
Match: UPI00053C1A11 (uncharacterized protein LOC104807169 isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C1A11)

HSP 1 Score: 55.1 bits (131), Expect = 3.870e-7
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:   31 VIDALASFPLAVDEERLPGVYQLAPTTKASMGNTAYLIVRPEKGNIMIDVPRY 189
            ++ A  +FP+ VDEERLPG+Y     +K S G  +YLI+ P+ GNI++D PRY
Sbjct:  131 ILRAQDTFPVPVDEERLPGIYHCGFHSKKSYGAASYLILHPD-GNILVDSPRY 182
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BLAST of mRNA_H-elongata_contig164209.4058.1 vs. uniprot
Match: UPI0009018693 (uncharacterized protein LOC109185883 isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI0009018693)

HSP 1 Score: 55.1 bits (131), Expect = 3.890e-7
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:   25 QQVIDALASFPLAVDEERLPGVYQLAPTTKASMGNTAYLIVRPEKGNIMIDVPRY 189
            + +++   +FP+ ++E+R+PG+Y     ++ S G T+YLIV PE GNI++D PRY
Sbjct:  135 RDILEVQKTFPIPINEQRIPGIYHCGYHSEKSFGCTSYLIVHPE-GNILVDSPRY 188
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164209.4058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLY4_ECTSI2.190e-2370.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A1Y1IAW0_KLENI1.720e-849.09Metallo-beta-lactamase family protein n=1 Tax=Kleb... [more]
A0A834H1T3_RHOSS3.230e-841.27Lactamase_B domain-containing protein n=1 Tax=Rhod... [more]
A0A1R3GLX0_COCAP3.290e-850.94CASP-like protein n=2 Tax=Corchorus TaxID=93758 Re... [more]
A0A5J4ZJ65_9ASTE7.980e-849.06Lactamase_B domain-containing protein n=1 Tax=Nyss... [more]
A0A7N0T539_KALFE1.520e-754.17Lactamase_B domain-containing protein n=1 Tax=Kala... [more]
UPI000E6F87F12.230e-745.28uncharacterized protein LOC113297217 isoform X2 n=... [more]
A0A4Y7KA17_PAPSO2.780e-745.28Lactamase_B domain-containing protein n=2 Tax=Papa... [more]
UPI00053C1A113.870e-749.06uncharacterized protein LOC104807169 isoform X1 n=... [more]
UPI00090186933.890e-741.82uncharacterized protein LOC109185883 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164209contigH-elongata_contig164209:442..651 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.8
Seed ortholog evalue2e-18
Seed eggNOG ortholog2880.D7FLY4
EggNOG free text desc.4Fe-4S single cluster domain of Ferredoxin I
EggNOG OGs2QPS3@2759,COG0491@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBeta-lactamase-like
Ec32 orthologEc-22_000180.1
Exons1
Model size210
Cds size201
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.7485154-UTR-H-elongata_contig164209:441..4501622929960.7485154-UTR-H-elongata_contig164209:441..450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164209 442..450 +
1691679224.7313447-UTR-H-elongata_contig164209:441..4501691679224.7313447-UTR-H-elongata_contig164209:441..450Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig164209 442..450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929960.7615669-CDS-H-elongata_contig164209:450..6511622929960.7615669-CDS-H-elongata_contig164209:450..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164209 451..651 +
1691679224.7441208-CDS-H-elongata_contig164209:450..6511691679224.7441208-CDS-H-elongata_contig164209:450..651Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164209 451..651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164209.4058.1prot_H-elongata_contig164209.4058.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164209 451..651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164209.4058.1

>prot_H-elongata_contig164209.4058.1 ID=prot_H-elongata_contig164209.4058.1|Name=mRNA_H-elongata_contig164209.4058.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=67bp
MVYGNQQVIDALASFPLAVDEERLPGVYQLAPTTKASMGNTAYLIVRPEK
GNIMIDVPRYAGGTGGQ
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mRNA from alignment at H-elongata_contig164209:442..651+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164209.4058.1 ID=mRNA_H-elongata_contig164209.4058.1|Name=mRNA_H-elongata_contig164209.4058.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=210bp|location=Sequence derived from alignment at H-elongata_contig164209:442..651+ (Himanthalia elongata Himel1 dioecious)
TCTGTACAAATGGTGTACGGTAACCAGCAGGTGATCGATGCTCTGGCAAG
CTTCCCGCTAGCGGTGGACGAGGAGCGATTGCCAGGCGTCTACCAGCTCG
CTCCCACCACCAAGGCTTCGATGGGGAACACGGCCTACCTCATCGTGAGG
CCGGAGAAAGGCAACATCATGATCGACGTTCCAAGGTACGCTGGGGGGAC
TGGTGGGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig164209:442..651+

>mRNA_H-elongata_contig164209.4058.1 ID=mRNA_H-elongata_contig164209.4058.1|Name=mRNA_H-elongata_contig164209.4058.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at H-elongata_contig164209:442..651+ (Himanthalia elongata Himel1 dioecious)
ATGGTGTACGGTAACCAGCAGGTGATCGATGCTCTGGCAAGCTTCCCGCT
AGCGGTGGACGAGGAGCGATTGCCAGGCGTCTACCAGCTCGCTCCCACCA
CCAAGGCTTCGATGGGGAACACGGCCTACCTCATCGTGAGGCCGGAGAAA
GGCAACATCATGATCGACGTTCCAAGGTACGCTGGGGGGACTGGTGGGCA
GATGGTGTACGGTAACCAGCAGGTGATCGATGCTCTGGCAAGCTTCCCGC
TAGCGGTGGACGAGGAGCGATTGCCAGGCGTCTACCAGCTCGCTCCCACC
ACCAAGGCTTCGATGGGGAACACGGCCTACCTCATCGTGAGGCCGGAGAA
AGGCAACATCATGATCGACGTTCCAAGGTACGCTGGGGGGACTGGTGGGC
AG
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