mRNA_H-elongata_contig1642.4057.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1642.4057.1 vs. uniprot
Match: D8LSG2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG2_ECTSI) HSP 1 Score: 615 bits (1587), Expect = 1.320e-189 Identity = 444/1097 (40.47%), Postives = 564/1097 (51.41%), Query Frame = 1
Query: 1 NKDRDGGLRFSEMVGMLRGMGTRAPPSATANELDYIRAFKEIGVQTDKNGFVTEDGFVAFYRDFGHLGEDIEESGVASLSSFLGLKLSAVGQIDASAAERLETSLLEEHPRLGRVEKALAFFLRFARDVHLDCFAESIGDWVAPVKGGRNWLRACLLGPGWASRAVERVQQWLADGDQGVIPNFRDAVAEGLGKRWVSAPQDWYAPGGEVLSSLPGC-------ASSDH----------------------RPQSDEETGVGKQL-------------------LFPTSQPPAKPFT----DAATSRGDNASRRDHVFGAAPASEPPSS----------------ICGDDDVGDARPWGQGYEVRTDYDVRWQREGDAERHDTIKRDSTEDPMDSMRAREANDRDIS-----VAAKKRTAVSGDAEENEVLNNNTAFRDKDVAVPKEERVDLADIVVKAGSVQEMEEAADKAEALRTMLTSYVKSKIEADLHHELXXXXXXXXXXKKRLEAAMVAAIARGLRAYDASRSRLEGVATLGVGTHKLTARLQIRGFPFFSLLPAGMGEPAAGRFEKEAREARAEARRRAALDEIDRAKEQQASLITYREQKRAEKQRLKKQKWAMEEIDLYERGMCARQRATTNTNEKDHAQGLWRQLVALRQRRSRGTPGAAAAVNNFGVLLVEQAGRDSVLAAEGRKLLKAAVDMAEVGMRASAGKNYGSGDTVQVITTASSEFIKTPTMDNHLVVDASSAPGEGNAGTDVNTGAVSGAVLQGNAVVGNMRPDFDGEGDEAPTKGGFTLREEWAAIYALFSSNLCFAIEGPGRVSHYKSSNEQESREFRAEIRMQDGNAGNSEGYCTRAS------------------RCENLFSQLPKRVHLVASGSSDSWTCAGVGVTLFDPETPFWWTRPHREAEDEEERNMAENKSGQKLLGDDA-------------MGARRGAVVRNRTAPSGGNDEGRNEGVDYTDLEVLEVLDPARAARIRWRQARQXXXXXXXXXXXXXXXETQRQLQTQEKEAETTHAVGGKPRSP-RRRSVISPKEQEAAEQYDDMVVESKGRFVRAVGAVKALHAR 2976
+KD DGGL +SEMVGMLR MG RA A ELDY+ KE+GV+TD+ G+VTEDG VAFYRDFG LG+DIE SGVASL+S LG+K+SAVGQ+DA AAERLE +EEHP+LGR EKAL+F LRFA D HLDC ESI DW+AP G L+ LL PGWASRAVE +Q+WLADGD+GVIP+FRDA A G+RW S P WY PGG++ S + + SDH RP+ T G ++ + T+ P K T D R +V AP+SEP S G R + D ++ + + + S E V ++R + G EE + ++D + +E DL D+ V+ G++ +M+ A +KA+AL+ ML S + SKIE D+ EL +RL+AA AIARGLRAYDA+R+RLEGVATLG+GT K+TARLQ+ GFP FSLLPAGMGEP AGR E+ AREARAE RRR ALDEIDRAK++Q EK RLK+++ EE+DLYERG+ ARQRA T +EK A+ WR+LVA+RQRR +GT GAAAAVNN GVLLV+Q+ R+SV AAEGR LL+AAV MAE G R + +SE P+ DG+G ++EW + ALFSSNL FA EGPGR +Y ++E + + + + GN G RC LF L + ASG SDSW C GVGVTLF+PE PFWW R H E ++E ++ +A +K + G + R AVVRNR D+G G YTDLEVL+V+DP RAARIR RQ R + QRQL+ Q+KEAE A + R R V + + ++ A++ + GRFVRA GAVK L AR
Sbjct: 1392 DKDLDGGLSYSEMVGMLRRMGMRATHGAMPTELDYLHTLKEMGVKTDRQGYVTEDGLVAFYRDFGRLGDDIEASGVASLNSLLGVKVSAVGQVDALAAERLEDMTIEEHPQLGRAEKALSFLLRFAVDSHLDCSGESIADWLAPADGDVR-LKEWLLSPGWASRAVEEIQKWLADGDEGVIPSFRDAAAAAFGERWASTPSGWYEPGGDMPSFVAAGLFDGGSESDSDHNNXXXXXXXXXXXXXXXXRHRARPRGTTPTTFGGRVHEQDRRGAGPRGSNTETMSIGLTTPPRTKSSTTVTADTXXXXXXXXXRLRNVT-MAPSSEPSGSNKXXXXXXXXXXXXXXXXXXXXXXXXXXXADGSTTRRLHTTERNNAKDLAQYLGVSEEESHKENGSKTGGEEGRGGRGRGKGGVDGRERAQMDGVREEGGGTESVQTHGNED-EIEREGVPDLEDVFVEEGALGDMKAALEKAKALKAMLASGLPSKIEEDMWKELEIVEEKARGIDERLQAATATAIARGLRAYDAARARLEGVATLGLGTRKVTARLQVTGFPIFSLLPAGMGEPMAGRLEEGAREARAETRRRVALDEIDRAKDRQRREEXXXXXXHLEKLRLKEEEKMQEEVDLYERGLSARQRAATRESEKAEAEKHWRRLVAIRQRRRKGTAGAAAAVNNLGVLLVDQSERESVHAAEGRMLLQAAVAMAEAGSRTH--------------SHPASESKARPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTDGQG-----------KKEWEMLLALFSSNLSFATEGPGR--NYDHNDEDQ------DAGVGENGRGNEHGANKEVDDEVXXXXXXXXXXSNVKDRCVALFEGLSPAASVAASGPSDSWECLGVGVTLFEPEDPFWWEREHPEDDEERKQALAAHKLKKSEEGGELEDGHFNDTRRPQETSTTREAVVRNRQV----TDDGEMGG-GYTDLEVLDVIDPGRAARIRIRQTRHKAQQERRQVLLERRKKYQRQLRRQDKEAEAARAASAQTREAYHEREVAARRLKKEADERESR--RRTGRFVRAAGAVKTLRAR 2445
BLAST of mRNA_H-elongata_contig1642.4057.1 vs. uniprot
Match: A0A6H5KSH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH1_9PHAE) HSP 1 Score: 358 bits (919), Expect = 1.170e-104 Identity = 322/954 (33.75%), Postives = 423/954 (44.34%), Query Frame = 1
Query: 226 VASLSSFLGLKLSAVGQIDASAAERLETSLLEEHPRLGRVEKALAFFLRFARDVHLDCFAESIGDWVAPVKGGRNWLRACLLGPGWASRAVERVQQWLADGDQGVIPNFRDAVAEGLGKRWVSAPQDWYAPGGEVLSSLPGC-------ASSDH----------------------RPQSDEETGVGKQL-------LFPTSQ-----------PPAKPFTDAATSR------GDNASRRDHVFGAAPASEPPSSICGDDDVGDARPW---------------------------------GQGYEVRTDYDVRWQREGDAERHDTIKRDSTEDPMDSMRARE----ANDRDIS-VAAKKRTAVSGDAEENEVLNNNTAFRDKDVAVPKEERVDLADIVVKAGSVQEMEEAADKAEALRTMLTSYVKSKIEADLHHELXXXXXXXXXXKKRLEAAMVAAIARGLRAYDASRSRLEGVATLGVGTHKLTARLQIRGFPFFSLLPAGMGEPAAGRFEKEAREARAEARRRAALDEIDRAKEQQASLITYREQKRAEKQRLKKQKWAMEEIDLYERGMCARQRATTNTNEKDHAQGLWRQLVALRQRRSRGTPGAAAAVNNFGVLLVEQAGRDSVLAAEGRKLLKAAVDMAEVGMRASAGKNYGSGDTVQVITTASSEFIKTPTMDN-------HLVVDASSAPGEGNAGTDVNTGAVSGAVLQGNAVVGNMRPDFDGEGDEAPTKGGFTLREEWAAIYALFSSNLCFAIEGPGRVSHYKS-----------------SNEQESREFRAEIRMQDGNAGNSEGYCTRASRCENLFSQLPKRVHLVASGSSDSWTCAGVGVTLFDPETPFWWTRPHREAEDEEERNMAENK---SGQKLLGDDAM--GARRGAVVRNRTAPSGGNDEGRNEGVDYTDLEVLEVLDPARAARIRWRQAR 2727
V SL+S LG+ LSAVGQ+DA AA+RLE +EEHP+LGR EKAL+F LRFA D HLDC ESI DW+AP ADGD VIP+FRDA A G+RW S P W+ PGG++ S + + DH RP+ T G ++ PT PP T T+ GDN RR V AP+SEP G + +G G R + D ++ + + + + + RE A R V ++ + G EE + ++D + +E DL D+ V+AG++ M+ A +KA+AL+ ML S + SKIE D+ EL +RL+AA AIARGLRAYDA+R+RLEGVATLG+GT EK RLK+++ EE+DLYERG+ ARQRA T +EK A+ WR+LVA+RQRR +GT GAAAAVNN GVLLV+Q+ RDSV AAEGR LL+AAV MAE G R ++ + + +T S + TP V +A++A EG+A TD + + G + GG +EEW + ALFSSNL FA EGPGR + +N++E + + GN +G +RC LF L + ASG SDSW C GVGVTLF+ E PFWW R H E ++E ++ +A +K + G+D RR AVVRNR A G G YTDLEVL+V+DP RAARIR RQ R
Sbjct: 123 VGSLNSLLGVNLSAVGQVDALAAKRLEDMTMEEHPQLGRAEKALSFLLRFAVDSHLDCSGESIADWLAP-----------------------------ADGDVLVIPSFRDAAAAAFGERWRSTPAGWFDPGGDMPSFVAADLNDEGSESDGDHNNGXXXXXXXXXXRGGTRRHLARPRGTTPTTFGGRVHEQERGGAGPTGNKTETMSVVLTTPPRTVSTTTVTAETAGGDSGDNG-RRSKVA-MAPSSEP----SGSNKIGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDANGSMTRRPHTTERNNAKDLAQYLGVSDEESHEGIGGKTGREEGRGARGRGKECVDGQELAQMDGVHEEGGGAESEQPHGNED-KIEQEGVPDLEDVFVEAGALGGMKAALEKAKALKAMLASGLPSKIEEDIRKELEVVEEKARGIDERLQAATATAIARGLRAYDAARARLEGVATLGLGTRXXXXXXXXXXXXL-------------------------------------------------------EKLRLKEEEKMKEEVDLYERGLSARQRAATRESEKAEAEKHWRRLVAIRQRRRKGTAGAAAAVNNLGVLLVDQSERDSVHAAEGRMLLQAAVAMAEAGART---PSHPASEIKAGPSTPPSSAMTTPKPTAPSSADPPQAVAEAATAAAEGHAQTDR-----------------HGESENSESGKDLLVPGG---KEEWEMLLALFSSNLSFATEGPGRNYDHNDXXXXXXXXXXXXXXXXXANKEEGDD-------EVGNESRGQGGSNVKNRCVALFEGLSPAASVAASGPSDSWECLGVGVTLFEREGPFWWEREHLEDDEERKQALAAHKLKKPEEGRGGEDGHLNDTRREAVVRNRQAADDGGTGG-----GYTDLEVLDVIDPGRAARIRIRQTR 950
BLAST of mRNA_H-elongata_contig1642.4057.1 vs. uniprot
Match: A0A6H5KGV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGV4_9PHAE) HSP 1 Score: 140 bits (353), Expect = 6.230e-35 Identity = 73/122 (59.84%), Postives = 89/122 (72.95%), Query Frame = 1
Query: 184 RDFGHL---GEDIEESGVASLSSFLGLKLSAVGQIDASAAERLETSLLEEHPRLGRVEKALAFFLRFARDVHLDCFAESIGDWVAPVKGGRNWLRACLLGPGWASRAVERVQQWLADGDQGV 540
R GH+ GE+ + + V SL+S LG+ LSAVGQ+DA AA+RLE +EEHP+LGR EKAL F LRFA D HLDC ESI DW+AP G L+ LL PGWASRAVE +++WLADGD+GV
Sbjct: 2 RRRGHISFVGEETQTTVVGSLNSLLGVNLSAVGQVDALAAKRLEDMTMEEHPQLGRAEKALPFLLRFAVDSHLDCSGESIADWLAPADGDVR-LKERLLSPGWASRAVEEMKKWLADGDEGV 122 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1642.4057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1642.4057.1 >prot_H-elongata_contig1642.4057.1 ID=prot_H-elongata_contig1642.4057.1|Name=mRNA_H-elongata_contig1642.4057.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=992bp NKDRDGGLRFSEMVGMLRGMGTRAPPSATANELDYIRAFKEIGVQTDKNGback to top mRNA from alignment at H-elongata_contig1642:9104..15920- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1642.4057.1 ID=mRNA_H-elongata_contig1642.4057.1|Name=mRNA_H-elongata_contig1642.4057.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6817bp|location=Sequence derived from alignment at H-elongata_contig1642:9104..15920- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1642:9104..15920- >mRNA_H-elongata_contig1642.4057.1 ID=mRNA_H-elongata_contig1642.4057.1|Name=mRNA_H-elongata_contig1642.4057.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=5952bp|location=Sequence derived from alignment at H-elongata_contig1642:9104..15920- (Himanthalia elongata Himel1 dioecious)back to top |