mRNA_H-elongata_contig164074.4049.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig164074.4049.1
Unique NamemRNA_H-elongata_contig164074.4049.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig164074.4049.1 vs. uniprot
Match: D7G7Z3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Z3_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 5.900e-38
Identity = 73/115 (63.48%), Postives = 87/115 (75.65%), Query Frame = 1 
Query:    1 KFLKERELLKDHGGLKRKQAMRGVSVDRTNIVEKVTIKDLEAPPGRLWIPAAVTGPVDGNKLD-PFKNVLVAYCQLDMAAYHESPWMLAMGTFHQRQSGCLDDKSLVRTYRFSSL 342
            K L +REL ++ G  K++   RG+SVDR NIVE V + DL APPGRLWIPAA++GP++ +  D    NVLVAYCQLDM AYHESPW+ AMG FHQR SGC+DD SL RTYR SSL
Sbjct:   71 KDLGDRELDRN-GKPKKRMGSRGISVDRKNIVETVEMDDLRAPPGRLWIPAALSGPINHDSPDNALFNVLVAYCQLDMVAYHESPWLFAMGAFHQRTSGCMDDPSLTRTYRLSSL 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig164074.4049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7Z3_ECTSI5.900e-3863.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig164074contigH-elongata_contig164074:226..582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size357
Cds size357
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929959.7680464-CDS-H-elongata_contig164074:225..5821622929959.7680464-CDS-H-elongata_contig164074:225..582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164074 226..582 -
1691679224.3024807-CDS-H-elongata_contig164074:225..5821691679224.3024807-CDS-H-elongata_contig164074:225..582Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig164074 226..582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig164074.4049.1prot_H-elongata_contig164074.4049.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig164074 226..582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig164074.4049.1

>prot_H-elongata_contig164074.4049.1 ID=prot_H-elongata_contig164074.4049.1|Name=mRNA_H-elongata_contig164074.4049.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
KFLKERELLKDHGGLKRKQAMRGVSVDRTNIVEKVTIKDLEAPPGRLWIP
AAVTGPVDGNKLDPFKNVLVAYCQLDMAAYHESPWMLAMGTFHQRQSGCL
DDKSLVRTYRFSSLMVRT*
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mRNA from alignment at H-elongata_contig164074:226..582-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig164074.4049.1 ID=mRNA_H-elongata_contig164074.4049.1|Name=mRNA_H-elongata_contig164074.4049.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=357bp|location=Sequence derived from alignment at H-elongata_contig164074:226..582- (Himanthalia elongata Himel1 dioecious)
AAATTTCTTAAGGAAAGGGAGCTGCTCAAAGACCACGGAGGGTTGAAAAG
GAAGCAGGCCATGAGGGGGGTATCTGTGGACCGTACCAACATTGTGGAGA
AAGTCACGATCAAAGACTTGGAAGCGCCGCCTGGGCGGTTGTGGATACCA
GCGGCGGTCACCGGGCCGGTTGATGGAAACAAGCTCGATCCGTTCAAAAA
TGTCTTGGTGGCATATTGCCAGCTGGATATGGCCGCCTACCACGAAAGCC
CGTGGATGTTAGCCATGGGCACCTTCCACCAGAGGCAATCAGGTTGCCTT
GACGATAAGTCCTTGGTCAGGACGTACCGTTTTTCCTCTCTCATGGTGAG
AACTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig164074:226..582-

>mRNA_H-elongata_contig164074.4049.1 ID=mRNA_H-elongata_contig164074.4049.1|Name=mRNA_H-elongata_contig164074.4049.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig164074:226..582- (Himanthalia elongata Himel1 dioecious)
AAATTTCTTAAGGAAAGGGAGCTGCTCAAAGACCACGGAGGGTTGAAAAG
GAAGCAGGCCATGAGGGGGGTATCTGTGGACCGTACCAACATTGTGGAGA
AAGTCACGATCAAAGACTTGGAAGCGCCGCCTGGGCGGTTGTGGATACCA
GCGGCGGTCACCGGGCCGGTTGATGGAAACAAGCTCGATCCGTTCAAAAA
TGTCTTGGTGGCATATTGCCAGCTGGATATGGCCGCCTACCACGAAAGCC
CGTGGATGTTAGCCATGGGCACCTTCCACCAGAGGCAATCAGGTTGCCTT
GACGATAAGTCCTTGGTCAGGACGTACCGTTTTTCCTCTCTCATGGTGAG
AACTTGAAAATTTCTTAAGGAAAGGGAGCTGCTCAAAGACCACGGAGGGT
TGAAAAGGAAGCAGGCCATGAGGGGGGTATCTGTGGACCGTACCAACATT
GTGGAGAAAGTCACGATCAAAGACTTGGAAGCGCCGCCTGGGCGGTTGTG
GATACCAGCGGCGGTCACCGGGCCGGTTGATGGAAACAAGCTCGATCCGT
TCAAAAATGTCTTGGTGGCATATTGCCAGCTGGATATGGCCGCCTACCAC
GAAAGCCCGTGGATGTTAGCCATGGGCACCTTCCACCAGAGGCAATCAGG
TTGCCTTGACGATAAGTCCTTGGTCAGGACGTACCGTTTTTCCTCTCTCA
TGGTGAGAACTTGA
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