mRNA_H-elongata_contig163998.4044.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163998.4044.1
Unique NamemRNA_H-elongata_contig163998.4044.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163998.4044.1 vs. uniprot
Match: A0A432FEB4_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A432FEB4_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 4.960e-9
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   55 VLPAISQGVSVNAIGGGGDTPLHAAAATGNTDSARLLLARGADPLRRNTVGETPLDLARRLGQ 243
            V  AI+ G  VN +G  G+TPLH AA  G+   A LL+A+GAD L   + GETPLDLA RLGQ
Sbjct:   42 VKQAIADGADVNTMGDEGETPLHQAALGGHKKVAELLIAKGAD-LNAKSYGETPLDLAIRLGQ 103
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BLAST of mRNA_H-elongata_contig163998.4044.1 vs. uniprot
Match: A0A809CWE9_RALSL (Uncharacterized protein n=8 Tax=Burkholderiaceae TaxID=119060 RepID=A0A809CWE9_RALSL)

HSP 1 Score: 54.3 bits (129), Expect = 4.600e-6
Identity = 30/56 (53.57%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   67 ISQGVSVNAIGGGGDTPLHAAAATGNTDSARLLLARGADPLRRNTVGETPLDLARR 234
            +  G  VNA+G  G T LH AA  GNT++ARLLLA GADP  R+   +T LD AR+
Sbjct:  421 LDSGADVNAVGPHGMTALHMAAIDGNTETARLLLAHGADPNVRDEQHKTALDYARK 476
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BLAST of mRNA_H-elongata_contig163998.4044.1 vs. uniprot
Match: A0A8K1FHF6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHF6_PYTOL)

HSP 1 Score: 53.5 bits (127), Expect = 8.890e-6
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:   76 GVSVNAIGGGGDTPLHAAAATGNTDSARLLLARGADPLRRNTVGETPLDLARRL 237
            G  VNA    G TPLH AA +G+ D  + LLARGADP RR+  G TPL + R L
Sbjct:  154 GFDVNARDAFGRTPLHVAAMSGHVDVTKALLARGADPTRRDRAGLTPLSVVRTL 207
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BLAST of mRNA_H-elongata_contig163998.4044.1 vs. uniprot
Match: A0A536NHD2_9CHLR (Ankyrin repeat domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536NHD2_9CHLR)

HSP 1 Score: 50.1 bits (118), Expect = 9.650e-5
Identity = 32/72 (44.44%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:  100 GGGDTPLHAAAATGNTDSARLLLARGADPLRRNTVGETPLDLARRLGQGREASRGMNGIVWILEGAASEAAA 315
            G G TPLH AA  G+ +SARLLLA GA+P RR   G T  D+A        + RG  G++ +L  + +E AA
Sbjct:  160 GAGFTPLHVAAENGDVESARLLLAAGANPERRTDDGRTAADMA--------SERGHTGVLVLLRESPAEEAA 223
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163998.4044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A432FEB4_9BACT4.960e-955.56Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A809CWE9_RALSL4.600e-653.57Uncharacterized protein n=8 Tax=Burkholderiaceae T... [more]
A0A8K1FHF6_PYTOL8.890e-653.70Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A536NHD2_9CHLR9.650e-544.44Ankyrin repeat domain-containing protein n=1 Tax=C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163998contigH-elongata_contig163998:976..1338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_000590.1
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size363
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.8930314-CDS-H-elongata_contig163998:975..13381622929958.8930314-CDS-H-elongata_contig163998:975..1338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163998 976..1338 -
1691679223.828519-CDS-H-elongata_contig163998:975..13381691679223.828519-CDS-H-elongata_contig163998:975..1338Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163998 976..1338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163998.4044.1prot_H-elongata_contig163998.4044.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163998 976..1338 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163998.4044.1

>prot_H-elongata_contig163998.4044.1 ID=prot_H-elongata_contig163998.4044.1|Name=mRNA_H-elongata_contig163998.4044.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MFYPQCLAQCFTRNAWRNVLPAISQGVSVNAIGGGGDTPLHAAAATGNTD
SARLLLARGADPLRRNTVGETPLDLARRLGQGREASRGMNGIVWILEGAA
SEAAAVAAAAAVIEAEKAAAR
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mRNA from alignment at H-elongata_contig163998:976..1338-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163998.4044.1 ID=mRNA_H-elongata_contig163998.4044.1|Name=mRNA_H-elongata_contig163998.4044.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=363bp|location=Sequence derived from alignment at H-elongata_contig163998:976..1338- (Himanthalia elongata Himel1 dioecious)
ATGTTTTACCCGCAATGTTTGGCGCAATGTTTTACCCGCAATGCTTGGCG
CAATGTTTTACCCGCAATCTCTCAGGGGGTGTCTGTGAACGCCATCGGCG
GGGGGGGCGACACCCCACTCCACGCCGCCGCGGCCACGGGGAACACTGAT
TCTGCCCGCCTGCTGCTCGCTCGTGGGGCCGACCCGCTACGACGGAACAC
CGTGGGGGAGACGCCACTTGATTTGGCGCGGCGGCTCGGGCAAGGTCGGG
AAGCCTCGCGCGGGATGAACGGGATCGTCTGGATTCTAGAGGGCGCTGCG
TCCGAGGCTGCGGCTGTTGCGGCAGCGGCGGCAGTGATCGAGGCGGAGAA
AGCAGCGGCGCGA
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Coding sequence (CDS) from alignment at H-elongata_contig163998:976..1338-

>mRNA_H-elongata_contig163998.4044.1 ID=mRNA_H-elongata_contig163998.4044.1|Name=mRNA_H-elongata_contig163998.4044.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig163998:976..1338- (Himanthalia elongata Himel1 dioecious)
ATGTTTTACCCGCAATGTTTGGCGCAATGTTTTACCCGCAATGCTTGGCG
CAATGTTTTACCCGCAATCTCTCAGGGGGTGTCTGTGAACGCCATCGGCG
GGGGGGGCGACACCCCACTCCACGCCGCCGCGGCCACGGGGAACACTGAT
TCTGCCCGCCTGCTGCTCGCTCGTGGGGCCGACCCGCTACGACGGAACAC
CGTGGGGGAGACGCCACTTGATTTGGCGCGGCGGCTCGGGCAAGGTCGGG
AAGCCTCGCGCGGGATGAACGGGATCGTCTGGATTCTAGAGGGCGCTGCG
TCCGAGGCTGCGGCTGTTGCGGCAGCGGCGGCAGTGATCGAGGCGGAGAA
AGCAGCGGCGCGAATGTTTTACCCGCAATGTTTGGCGCAATGTTTTACCC
GCAATGCTTGGCGCAATGTTTTACCCGCAATCTCTCAGGGGGTGTCTGTG
AACGCCATCGGCGGGGGGGGCGACACCCCACTCCACGCCGCCGCGGCCAC
GGGGAACACTGATTCTGCCCGCCTGCTGCTCGCTCGTGGGGCCGACCCGC
TACGACGGAACACCGTGGGGGAGACGCCACTTGATTTGGCGCGGCGGCTC
GGGCAAGGTCGGGAAGCCTCGCGCGGGATGAACGGGATCGTCTGGATTCT
AGAGGGCGCTGCGTCCGAGGCTGCGGCTGTTGCGGCAGCGGCGGCAGTGA
TCGAGGCGGAGAAAGCAGCGGCGCGA
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