mRNA_H-elongata_contig16399.4043.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE) HSP 1 Score: 226 bits (576), Expect = 2.440e-62 Identity = 127/351 (36.18%), Postives = 199/351 (56.70%), Query Frame = 1
Query: 73 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
+ +K + K ++GK++ +K +LVA+GF Q+ V Y P P +ASI+++L K L H+D KQA+ +DE++++++P + +AI+GL Q+GR W D + G EQ K DPC+FRK+VD V +++V++VDDIL +D+ + A L KF K++G+ +++ GC I R+ +A L+I Q + SM+E F+VK S+IPAT G K E EE +P R A+G +MW + + D++ AVRAVAR P H + KI+ +L T+D GITY +G GL + VY+D+ + A + RRSVSG+ + +S
Sbjct: 782 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVS 1122
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE) HSP 1 Score: 226 bits (576), Expect = 2.880e-62 Identity = 127/351 (36.18%), Postives = 199/351 (56.70%), Query Frame = 1
Query: 73 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
+ +K + K ++GK++ +K +LVA+GF Q+ V Y P P +ASI+++L K L H+D KQA+ +DE++++++P + +AI+GL Q+GR W D + G EQ K DPC+FRK+VD V +++V++VDDIL +D+ + A L KF K++G+ +++ GC I R+ +A L+I Q + SM+E F+VK S+IPAT G K E EE +P R A+G +MW + + D++ AVRAVAR P H + KI+ +L T+D GITY +G GL + VY+D+ + A + RRSVSG+ + +S
Sbjct: 1161 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVS 1501
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE) HSP 1 Score: 226 bits (576), Expect = 2.910e-62 Identity = 127/351 (36.18%), Postives = 199/351 (56.70%), Query Frame = 1
Query: 73 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
+ +K + K ++GK++ +K +LVA+GF Q+ V Y P P +ASI+++L K L H+D KQA+ +DE++++++P + +AI+GL Q+GR W D + G EQ K DPC+FRK+VD V +++V++VDDIL +D+ + A L KF K++G+ +++ GC I R+ +A L+I Q + SM+E F+VK S+IPAT G K E EE +P R A+G +MW + + D++ AVRAVAR P H + KI+ +L T+D GITY +G GL + VY+D+ + A + RRSVSG+ + +S
Sbjct: 1181 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVS 1521
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE) HSP 1 Score: 226 bits (576), Expect = 2.940e-62 Identity = 127/351 (36.18%), Postives = 199/351 (56.70%), Query Frame = 1
Query: 73 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
+ +K + K ++GK++ +K +LVA+GF Q+ V Y P P +ASI+++L K L H+D KQA+ +DE++++++P + +AI+GL Q+GR W D + G EQ K DPC+FRK+VD V +++V++VDDIL +D+ + A L KF K++G+ +++ GC I R+ +A L+I Q + SM+E F+VK S+IPAT G K E EE +P R A+G +MW + + D++ AVRAVAR P H + KI+ +L T+D GITY +G GL + VY+D+ + A + RRSVSG+ + +S
Sbjct: 1324 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPK-------REDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVS 1664
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE) HSP 1 Score: 219 bits (558), Expect = 4.550e-61 Identity = 122/351 (34.76%), Postives = 199/351 (56.70%), Query Frame = 1
Query: 73 IGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
+ +K + K ++GK++ +K +LVA+GF Q+ V Y P P +ASI+++L K L H+D KQA+ +DE++++++P + +AI+GL Q+GR W D + G EQ K DPC+FRK+VD V +++V++VDDIL +D+ + A L KF K++ + +++ GC I R+ + L+I Q + SM++ F+V+ S+IPA+ GV K D+ + E +P R A+G +MW + + D++ AVRAVAR P H + KI+ +L T+D GITY +G GL + VY+D+ + A + RRSVSG+ + +S
Sbjct: 336 VSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGE-------WPVREAIGSIMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQ-RGSGLGLAVYVDASY-ADTEDRRSVSGLATTVGGTVVS 676
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA) HSP 1 Score: 214 bits (546), Expect = 1.230e-60 Identity = 131/379 (34.56%), Postives = 213/379 (56.20%), Query Frame = 1
Query: 4 TDMRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPE---------EYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVK--KGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLIL 1107
++++ ++ N +K V + + IG + ++ K + G+V +YK +LVA+G+ Q G+ Y E Y P S++ +L A+ E+ D AFL ++E++Y+E+PE E + V L ++++GL QA R WN + + + G E A DPC++ + +GE E +V ++VDD+L + KA + A + KF++KD+G AR+ +G I + + R L I Q +S+++ F + K P GV L+KADE + E++ +M++ PYR VG LM+ A T DI+ AV ++RF ENPG H +K++++LL TKD GI YDG G E Y D+D+ D RRSVSG++L+L
Sbjct: 87 SELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQPEAYSDADWAGNRDDRRSVSGMLLML 462
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6A3Q8N8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3Q8N8_9STRA) HSP 1 Score: 214 bits (546), Expect = 2.250e-60 Identity = 132/379 (34.83%), Postives = 214/379 (56.46%), Query Frame = 1
Query: 4 TDMRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPE---------EYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVK--KGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLIL 1107
+++ +V N +K V + + IG + ++ K + + +YK +LVA+G+ Q + Y E Y P SI+ +LV +A+ E+ D AFL ++E++Y+E+PE E Q V L ++++GL A R WN+ + + ++G E A DPC++ + +GE E +V ++VD++L + KA + A + KF++KD+G AR+ +G I N + R L I Q +S+++TF + K P GV L+KADE + E++ +M++ PYR VG LM+ A T D++ AV ++RF ENPG H +K +++LL TKD GI YDGQ G +E Y D+D+ D RRSVSG++L+L
Sbjct: 120 SELESLVANKTWKLVPKPVHQRPIGCRWVFALKRDEKRQAVRYKARLVAKGYSQRHDIDYEETYSPVAYLNSIRAMLVKCSAEGMEIERCDFDTAFLYGKLEEEIYMELPEGLRELLELAEAQGEDDVVCMLLQSLYGLKHASRVWNDTIDKHLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDNMLIASRQKAVITSVKAGIAEKFRIKDLGRARFILGIEIDYNMERRTLGISQKAYTESIIKTFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSVVGSLMYLACGTRPDVSVAVAKLSRFLENPGEKHWDSGIKAVRYLLKTKDVGIVYDGQ-LGTHLEAYSDADWAGNRDDRRSVSGMLLML 495
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6A3DSS8_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DSS8_9STRA) HSP 1 Score: 213 bits (543), Expect = 1.050e-59 Identity = 130/379 (34.30%), Postives = 216/379 (56.99%), Query Frame = 1
Query: 4 TDMRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPE---------EYQKFPGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVK--KGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLIL 1107
++++ ++ N +K V + + IG + ++ K + G+V +YK +LVA+G+ Q G+ Y E Y P SI+ +L +A+ E+ D AFL ++E++Y+E+ E E + V L ++++GL QA R WN + + ++G E A +DPC++ + +GE E +V ++VDD+L + KA + A + KF++KD+G AR+ +G I + + R L I Q +S+++ F + K P GV L+KADE + E++ +M++ PYR VG LM+ + T DI+ AV ++RF ENPG H +K++++LL TKD GI YDG G +E Y D+D+ D RRSVSG++L+L
Sbjct: 152 SELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLAKCSAEGMEIEQCDVDTAFLYGKLEEEIYMELLEGLRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADDDPCVYTRG-EGEDECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLSCGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGTQLEAYSDADWAGNWDDRRSVSGMLLML 527
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR) HSP 1 Score: 213 bits (542), Expect = 1.960e-58 Identity = 134/380 (35.26%), Postives = 205/380 (53.95%), Query Frame = 1
Query: 1 KTDMRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKFPGA--VGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVKKGSKIPATSGVPTLSKADESRNPE---EREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAIS 1125
K +M MV N V+ V IG K ++ K G +E+YK +LVA+GF Q EG+ YTE + P S ++++ A + EL D K AFL ++E++Y++ PE + G V LN++I+GL QA R W K ++ + + G E+ D C+++KV G +V++VDDIL DK + L F +KD+G+A Y +G I R+ L + Q + ++E FN+K S P+ + + + + S+ P+ ERE M+N PY AVG LM+ + T DIA AV + R+ NPG H K K+M++L TK++ + Y L + Y DSD+ C+DTR+S SG V +LA A+S
Sbjct: 453 KEEMNSMVSNKVWDLVTLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVITSFGFEENVMDQCIYQKV-SGSHICFLVLYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCS--PSVAPIVKGDRFELSQCPQNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAYAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKNFMLMYKRTD-NLEVIGYSDSDYAGCIDTRKSTSGYVFMLASGAVS 828
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Match: A0A6A3YGI7_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=11 Tax=Phytophthora TaxID=4783 RepID=A0A6A3YGI7_9STRA) HSP 1 Score: 213 bits (543), Expect = 2.270e-58 Identity = 130/384 (33.85%), Postives = 216/384 (56.25%), Query Frame = 1
Query: 4 TDMRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFWQVEGVHYTEKYLPTPVTASIQMLLVTTAAKDGELRHFDAKQAFLKVGIDEKLYIEIPEEYQKF---------PGAVGWLNKAIHGLIQAGRCWNNKVYDDMAAIGLEQAKEDPCMFRKVVDGEVEVVVVVHVDDILAHATDKATMDRFAAELG*KFKLKDIGDARYYMGCHITRNYKARKLKIDQHLNVKSMMETFNVK--KGSKIPATSGVPTLSKADESRNPEEREEMRNFPYRVAVGVLMWTAMTTWTDIASAVRAVARFCENPGPAHNKEVMKIMQFLLHTKDWGITYDGQGCGLCMEVYIDSDFEACLDTRRSVSGVVLILAKEAI 1122
+++ ++ N +K V + + IG + ++ K + G+V +YK +LVA+G+ Q G+ Y E Y P SI+ +L +A+ E+ D AFL ++ ++Y+E+PEE ++ V L ++++GL QA R WN + ++ ++G E A DPC++ + +GE E +V ++VDD+L + A + A + KF++KD+G AR+ +G I + + R L I Q +S+++ F + K P GV L+KADE + E++ +M+ PYR VG LM+ A T DI+ AV ++RF ENPG H +K++++LL TKD GI YDG G +E Y D+D+ D RRSVSG++L+L + +
Sbjct: 418 SELESLIVNKTWKLVPKPAHQRPIGCRWVFALKRDEKGQVVRYKARLVAKGYSQRHGIDYEETYSPVAYLNSIRAMLEKCSAEGMEIEQCDVDTAFLYEKLEAEIYMELPEELRELLELAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKNLKSMGFEPADADPCVYTRG-EGEDECIVCLYVDDMLIASRQMAVIASVKAGIAEKFRIKDMGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGVQ-LTKADEPQTEEDKAKMKLKPYRSLVGSLMYLARGTRPDISVAVAKLSRFPENPGEKHWDAGIKVVRYLLKTKDVGIVYDGL-LGAQLEAYSDADWAGNRDDRRSVSGMLLMLCRAPV 798 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16399.4043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig16399.4043.1 >prot_H-elongata_contig16399.4043.1 ID=prot_H-elongata_contig16399.4043.1|Name=mRNA_H-elongata_contig16399.4043.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp MRGMVENCVYKQVARQKDKLVIGTKMLYMRKVGQDGKVEKYKCQLVAQGFback to top mRNA from alignment at H-elongata_contig16399:3143..4267- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig16399.4043.1 ID=mRNA_H-elongata_contig16399.4043.1|Name=mRNA_H-elongata_contig16399.4043.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1125bp|location=Sequence derived from alignment at H-elongata_contig16399:3143..4267- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig16399:3143..4267- >mRNA_H-elongata_contig16399.4043.1 ID=mRNA_H-elongata_contig16399.4043.1|Name=mRNA_H-elongata_contig16399.4043.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig16399:3143..4267- (Himanthalia elongata Himel1 dioecious)back to top |