mRNA_H-elongata_contig163936.4042.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163936.4042.1
Unique NamemRNA_H-elongata_contig163936.4042.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163936.4042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163936contigH-elongata_contig163936:388..1091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size292
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163936.4042.1prot_H-elongata_contig163936.4042.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163936 409..1078 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.750643-UTR-H-elongata_contig163936:387..4081622929958.750643-UTR-H-elongata_contig163936:387..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163936 388..408 +
1691679223.7699661-UTR-H-elongata_contig163936:387..4081691679223.7699661-UTR-H-elongata_contig163936:387..408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163936 388..408 +
1622929958.787277-UTR-H-elongata_contig163936:1078..10911622929958.787277-UTR-H-elongata_contig163936:1078..1091Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163936 1079..1091 +
1691679223.7956128-UTR-H-elongata_contig163936:1078..10911691679223.7956128-UTR-H-elongata_contig163936:1078..1091Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163936 1079..1091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.7667072-CDS-H-elongata_contig163936:408..6241622929958.7667072-CDS-H-elongata_contig163936:408..624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163936 409..624 +
1691679223.7774544-CDS-H-elongata_contig163936:408..6241691679223.7774544-CDS-H-elongata_contig163936:408..624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163936 409..624 +
1622929958.7772274-CDS-H-elongata_contig163936:1036..10781622929958.7772274-CDS-H-elongata_contig163936:1036..1078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163936 1037..1078 +
1691679223.7851052-CDS-H-elongata_contig163936:1036..10781691679223.7851052-CDS-H-elongata_contig163936:1036..1078Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163936 1037..1078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163936.4042.1

>prot_H-elongata_contig163936.4042.1 ID=prot_H-elongata_contig163936.4042.1|Name=mRNA_H-elongata_contig163936.4042.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MRREPGHQPRAWGERQCVRKHRLRNRPRAPQGERQCLGDTGRRSAMIAPS
GSRKRTWNTRGRRESEEDCTSQGQKNPSRCDLKFH*
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mRNA from alignment at H-elongata_contig163936:388..1091+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163936.4042.1 ID=mRNA_H-elongata_contig163936.4042.1|Name=mRNA_H-elongata_contig163936.4042.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=704bp|location=Sequence derived from alignment at H-elongata_contig163936:388..1091+ (Himanthalia elongata Himel1 dioecious)
CGAGTTGCGCCAGCAGGCAACATGAGGAGAGAGCCTGGACATCAGCCGAG
AGCGTGGGGAGAGCGCCAGTGCGTAAGGAAACACCGACTGAGGAACCGAC
CGAGAGCGCCGCAAGGAGAGCGCCAGTGCTTAGGAGATACCGGTCGAAGG
AGTGCAATGATTGCACCATCAGGGAGCCGAAAACGGACCTGGAATACAAG
AGGTCGCCGTGAAAGCGAGGAGGACTGCACGTCCCAGGTGAACTTAAAGT
TTACGTATTTTTTATCGGATCATGAAATTTTTGCGGAAAGAGAAGCAACG
AGTTGGCGTCTTCGTTGGCGCCTTCGTGAAACCATCCCAGTTCATGAGCT
TGCCGCGATGCATCGATTAGGGCAAATGCGTCGCTTACAAATTCAAAAAG
AGCTCAAGGTCTGGAAAAGAGAGTTCGGTTTGGACTACCTTACTACGGCA
GCTGATATGGATGCCAGACGTTCAAACTCGAAGAATTTTTCCTACGGTGA
CTATTTCAATCCAAGACGTCCACATACTCCTGAAGAATTCACACTTGAGA
TGAAGGTGGACGTCCAGAGGTTAAGGATGGAAATAATCTTTTCGCAACCT
GCGCCCCCGCAATGTAATAAATTACCGCAATGCGCCGTTGGTGATACAGG
GTCAGAAGAACCCGAGTCGGTGCGACCTAAAGTTCCATTGAAAGAAGAAG
TATT
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Coding sequence (CDS) from alignment at H-elongata_contig163936:388..1091+

>mRNA_H-elongata_contig163936.4042.1 ID=mRNA_H-elongata_contig163936.4042.1|Name=mRNA_H-elongata_contig163936.4042.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig163936:388..1091+ (Himanthalia elongata Himel1 dioecious)
ATGAGGAGAGAGCCTGGACATCAGCCGAGAGCGTGGGGAGAGCGCCAGTG
CGTAAGGAAACACCGACTGAGGAACCGACCGAGAGCGCCGCAAGGAGAGC
GCCAGTGCTTAGGAGATACCGGTCGAAGGAGTGCAATGATTGCACCATCA
GGGAGCCGAAAACGGACCTGGAATACAAGAGGTCGCCGTGAAAGCGAGGA
GGACTGCACGTCCCAGATGAGGAGAGAGCCTGGACATCAGCCGAGAGCGT
GGGGAGAGCGCCAGTGCGTAAGGAAACACCGACTGAGGAACCGACCGAGA
GCGCCGCAAGGAGAGCGCCAGTGCTTAGGAGATACCGGTCGAAGGAGTGC
AATGATTGCACCATCAGGGAGCCGAAAACGGACCTGGAATACAAGAGGTC
GCCGTGAAAGCGAGGAGGACTGCACGTCCCAGGGTCAGAAGAACCCGAGT
CGGTGCGACCTAAAGTTCCATTGAGGTCAGAAGAACCCGAGTCGGTGCGA
CCTAAAGTTCCATTGA
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