mRNA_H-elongata_contig16391.4039.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16391.4039.1
Unique NamemRNA_H-elongata_contig16391.4039.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16391.4039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16391contigH-elongata_contig16391:2346..2736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size391
Cds size372
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.3976932-UTR-H-elongata_contig16391:2345..23641622929958.3976932-UTR-H-elongata_contig16391:2345..2364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16391 2346..2364 +
1691679223.621854-UTR-H-elongata_contig16391:2345..23641691679223.621854-UTR-H-elongata_contig16391:2345..2364Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16391 2346..2364 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.410348-CDS-H-elongata_contig16391:2364..27361622929958.410348-CDS-H-elongata_contig16391:2364..2736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16391 2365..2736 +
1691679223.6306422-CDS-H-elongata_contig16391:2364..27361691679223.6306422-CDS-H-elongata_contig16391:2364..2736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16391 2365..2736 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16391.4039.1prot_H-elongata_contig16391.4039.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16391 2365..2736 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16391.4039.1

>prot_H-elongata_contig16391.4039.1 ID=prot_H-elongata_contig16391.4039.1|Name=mRNA_H-elongata_contig16391.4039.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
MEDETKGIMNMRDELGHELDRINELERKLEHNRRNFVSIDGFLDIRCQVG
RHETDLVDLIRNRNNPVPSRDDTRFPVPIFSGKHHELRDFLKLFETWCLA
QGCEKALTADESIKMLRINREEL*
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mRNA from alignment at H-elongata_contig16391:2346..2736+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16391.4039.1 ID=mRNA_H-elongata_contig16391.4039.1|Name=mRNA_H-elongata_contig16391.4039.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=391bp|location=Sequence derived from alignment at H-elongata_contig16391:2346..2736+ (Himanthalia elongata Himel1 dioecious)
CGAGGAAAGAGTGAAACGAATGGAGGATGAAACGAAGGGTATTATGAACA
TGCGAGATGAGCTGGGACATGAACTGGACCGGATCAACGAACTCGAGAGG
AAGCTCGAACACAACAGGCGTAACTTCGTGAGCATAGATGGTTTTCTTGA
TATACGGTGTCAAGTAGGTCGCCACGAAACTGATTTGGTAGATTTGATTC
GAAACCGAAATAACCCAGTGCCCTCGAGAGATGATACGAGATTCCCCGTT
CCCATTTTTTCTGGGAAGCACCACGAGCTACGTGATTTCCTTAAATTGTT
CGAAACCTGGTGCCTTGCTCAAGGTTGTGAAAAAGCCTTGACTGCAGACG
AATCGATAAAAATGTTAAGAATTAACAGAGAAGAATTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig16391:2346..2736+

>mRNA_H-elongata_contig16391.4039.1 ID=mRNA_H-elongata_contig16391.4039.1|Name=mRNA_H-elongata_contig16391.4039.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig16391:2346..2736+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGATGAAACGAAGGGTATTATGAACATGCGAGATGAGCTGGGACA
TGAACTGGACCGGATCAACGAACTCGAGAGGAAGCTCGAACACAACAGGC
GTAACTTCGTGAGCATAGATGGTTTTCTTGATATACGGTGTCAAGTAGGT
CGCCACGAAACTGATTTGGTAGATTTGATTCGAAACCGAAATAACCCAGT
GCCCTCGAGAGATGATACGAGATTCCCCGTTCCCATTTTTTCTGGGAAGC
ACCACGAGCTACGTGATTTCCTTAAATTGTTCGAAACCTGGTGCCTTGCT
CAAGGTTGTGAAAAAGCCTTGACTGCAGACGAATCGATAAAAATGTTAAG
AATTAACAGAGAAGAATTATAAATGGAGGATGAAACGAAGGGTATTATGA
ACATGCGAGATGAGCTGGGACATGAACTGGACCGGATCAACGAACTCGAG
AGGAAGCTCGAACACAACAGGCGTAACTTCGTGAGCATAGATGGTTTTCT
TGATATACGGTGTCAAGTAGGTCGCCACGAAACTGATTTGGTAGATTTGA
TTCGAAACCGAAATAACCCAGTGCCCTCGAGAGATGATACGAGATTCCCC
GTTCCCATTTTTTCTGGGAAGCACCACGAGCTACGTGATTTCCTTAAATT
GTTCGAAACCTGGTGCCTTGCTCAAGGTTGTGAAAAAGCCTTGACTGCAG
ACGAATCGATAAAAATGTTAAGAATTAACAGAGAAGAATTATAA
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