mRNA_H-elongata_contig163891.4038.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163891.4038.1
Unique NamemRNA_H-elongata_contig163891.4038.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163891.4038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163891contigH-elongata_contig163891:208..1177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size243
Cds size213
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163891.4038.1prot_H-elongata_contig163891.4038.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163891 238..1177 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.3459532-UTR-H-elongata_contig163891:207..2371622929958.3459532-UTR-H-elongata_contig163891:207..237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163891 208..237 +
1691679223.5853384-UTR-H-elongata_contig163891:207..2371691679223.5853384-UTR-H-elongata_contig163891:207..237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163891 208..237 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.3576822-CDS-H-elongata_contig163891:237..3571622929958.3576822-CDS-H-elongata_contig163891:237..357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163891 238..357 +
1691679223.5985205-CDS-H-elongata_contig163891:237..3571691679223.5985205-CDS-H-elongata_contig163891:237..357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163891 238..357 +
1622929958.3678992-CDS-H-elongata_contig163891:1084..11771622929958.3678992-CDS-H-elongata_contig163891:1084..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163891 1085..1177 +
1691679223.6116667-CDS-H-elongata_contig163891:1084..11771691679223.6116667-CDS-H-elongata_contig163891:1084..1177Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163891 1085..1177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163891.4038.1

>prot_H-elongata_contig163891.4038.1 ID=prot_H-elongata_contig163891.4038.1|Name=mRNA_H-elongata_contig163891.4038.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MGMFPDNIDVQHAASVAVGNLANRHSENKRRLGEAGACSKVCAALACFQH
DLGVQYMACGAVGNLSHSNPQ
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mRNA from alignment at H-elongata_contig163891:208..1177+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163891.4038.1 ID=mRNA_H-elongata_contig163891.4038.1|Name=mRNA_H-elongata_contig163891.4038.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=970bp|location=Sequence derived from alignment at H-elongata_contig163891:208..1177+ (Himanthalia elongata Himel1 dioecious)
GCCGGAGCATGCGAGCTGATCGTGAGGACCATGGGGATGTTCCCCGACAA
CATCGACGTCCAGCACGCCGCCTCCGTGGCCGTCGGAAATCTCGCCAATC
GTCACTCCGAAAACAAGCGCCGCCTGGGAGAAGCGGGCGCCTGCAGCAAG
GTCGGGCCCTGCTTTCGATGCTGTTGCTTGCTTTCGATCTTAATGGAGTA
CTGTATGAAGGTCGAGTAGTCAGCGCTGGTAAAGCTTGAATCTTCCCGAT
CAAGTGAAAAAATGGGACCAAAGTTACTGTACTTCATCTGGAGGAGTGTT
GATATTTTGCTCCTCTAGAAATTTCTATTTGTAATATTGTGAGCGCTGAC
TATATGACTTTTTAGATGTTCATGAACCATTTTTTTTTAGTAAAGTTCTT
CGCAGAAAAATACAGGAGGAATATAAAATTTGTGAAAAACAGAGGAAATT
GGAAAGTTTTATCGTGGATAATTCTATTTATTGATAAATTATTTATACAG
TAGCGATCATTACTGAGTTATTGAGTTGGCCTGAGGAAGGAATCGGGCTT
GACTCGAGATTGCATATATATTTTGAAAAATATTTCGTGTATCCTTCAAT
CGAGAGCTTATGTAGAAATACACGAATTGATTACAAAATGAACAAGTCAA
AAACAAAATCAGGAAAAAGGAAGAAAAAAAATCCTCTAGCGTAATATAGA
CGGGGGGGGGGGGCGGGGGGGTCTCTGTCGGAGGTGATTTTTTTTCTTCC
TTAATTTGCGTTTTTTTTAAGCGAAAAAACACACCGCCGACTGTGCTTTA
TTTTAATTTAATTTATGTTATCGGCTGGCTCCCCTGTTATCGATCCTCCT
TCTCTTCCTTCTGACGCCTCTCGAAAGGTCTGCGCTGCGCTGGCGTGTTT
TCAACATGACCTTGGCGTGCAGTACATGGCGTGCGGAGCCGTGGGGAATC
TTTCCCACAGCAATCCCCAG
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Coding sequence (CDS) from alignment at H-elongata_contig163891:208..1177+

>mRNA_H-elongata_contig163891.4038.1 ID=mRNA_H-elongata_contig163891.4038.1|Name=mRNA_H-elongata_contig163891.4038.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig163891:208..1177+ (Himanthalia elongata Himel1 dioecious)
ATGGGGATGTTCCCCGACAACATCGACGTCCAGCACGCCGCCTCCGTGGC
CGTCGGAAATCTCGCCAATCGTCACTCCGAAAACAAGCGCCGCCTGGGAG
AAGCGGGCGCCTGCAGCAAGATGGGGATGTTCCCCGACAACATCGACGTC
CAGCACGCCGCCTCCGTGGCCGTCGGAAATCTCGCCAATCGTCACTCCGA
AAACAAGCGCCGCCTGGGAGAAGCGGGCGCCTGCAGCAAGGTCTGCGCTG
CGCTGGCGTGTTTTCAACATGACCTTGGCGTGCAGTACATGGCGTGCGGA
GCCGTGGGGAATCTTTCCCACAGCAATCCCCAGGTCTGCGCTGCGCTGGC
GTGTTTTCAACATGACCTTGGCGTGCAGTACATGGCGTGCGGAGCCGTGG
GGAATCTTTCCCACAGCAATCCCCAG
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