mRNA_H-elongata_contig163759.4033.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163759.4033.1
Unique NamemRNA_H-elongata_contig163759.4033.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163759.4033.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 60.1 bits (144), Expect = 6.660e-8
Identity = 45/135 (33.33%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:    1 MEPGGDPFKFMMEIDRLAVDLHRLGDKSVTELKKCVIIVSGLPTDYEMECRMLENNPVGLNRAEIERVAGNQYNRLLRQQHNSKAMSASKGHITVN-----RGKRG----GRRHHPKFN*KCFNCGVGGHYARDC 378
            ME G    K + + D L V L  LG+  + E ++ VI++S LPT+YE+ C ++EN        E++     +Y RL +++   +A+ A+            RG +G    G R +  F  KCFNCG  GH  RDC
Sbjct:  111 MEGGVTMAKHLDDFDELIVGLQTLGEP-LDEARQLVILLSSLPTEYELICSIVENAK-DFTLIEVKEKLLKEYERLDKKEGAERALKATANGSKFRCAKTFRGGKGSKAFGSRKNGGFKGKCFNCGQVGHMKRDC 243
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BLAST of mRNA_H-elongata_contig163759.4033.1 vs. uniprot
Match: A0A225UQ90_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UQ90_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 2.810e-6
Identity = 43/138 (31.16%), Postives = 68/138 (49.28%), Query Frame = 1 
Query:    1 MEPGGDPFKFMMEIDRLAVDLHRLGDKSVTELKKCVIIVSGLPTDYEMECRMLENNPVGLNRAEIERVAGNQYNRLLRQQHNSKAMSAS------------KGHITVNRGKRGGRRHHPKFN*KCFNCGVGGHYARDC 378
            ME G    + + +   L V L  LG+ S+ + ++ VI++S LPT++E+   + ENN   +   E++     +Y R  +++ + +A+ A+            KG    NR    GRR    F  KCFNCG  GH  RDC
Sbjct:   31 MEDGSTMARHLDKFVELFVGLQTLGE-SLDDSRQLVILLSSLPTEFELIASIEENNK-DVTLIEVKDKLIKEYERQQKKEISERALKATSFGGMSKSGKFGKGDKGYNRKSNNGRRL-VGFKGKCFNCGQAGHMKRDC 165
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BLAST of mRNA_H-elongata_contig163759.4033.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 8.520e-6
Identity = 41/135 (30.37%), Postives = 68/135 (50.37%), Query Frame = 1 
Query:    1 MEPGGDPFKFMMEIDRLAVDLHRLGDKSVTELKKCVIIVSGLPTDYEMECRMLENNPVGLNRAEIERVAGNQYNRLLRQQHNSKAMSASKG-----HITVNRGKRGGR-RHHPKFN*KCFNCGVGGHYARDCRTS 387
            ME G    K +   D L V L  LG+  + E ++ VI++S LPT+YE+   ++EN+   +   E++     +Y RL ++     A+ A+       +    +G++G   R +  F  KC+NC   GH  RDC +S
Sbjct:  111 MEDGVTMAKHLDNFDELVVGLQTLGEP-LDEARQLVILLSSLPTEYELISSIVENSK-DVTLIEVKERLLKEYERLEKKDGTESALKATANGGKFKNAKSFKGRKGNSARKNNAFKGKCYNCDQIGHMKRDCPSS 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163759.4033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
H3H572_PHYRM6.660e-833.33Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A225UQ90_9STRA2.810e-631.16Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4... [more]
A0A329SN38_9STRA8.520e-630.37Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163759contigH-elongata_contig163759:126..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.1225836-CDS-H-elongata_contig163759:125..4581622929958.1225836-CDS-H-elongata_contig163759:125..458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163759 126..458 +
1691679223.4440942-CDS-H-elongata_contig163759:125..4581691679223.4440942-CDS-H-elongata_contig163759:125..458Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163759 126..458 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929958.1329458-UTR-H-elongata_contig163759:458..5181622929958.1329458-UTR-H-elongata_contig163759:458..518Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163759 459..518 +
1691679223.4536994-UTR-H-elongata_contig163759:458..5181691679223.4536994-UTR-H-elongata_contig163759:458..518Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig163759 459..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163759.4033.1prot_H-elongata_contig163759.4033.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163759 126..458 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163759.4033.1

>prot_H-elongata_contig163759.4033.1 ID=prot_H-elongata_contig163759.4033.1|Name=mRNA_H-elongata_contig163759.4033.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MEPGGDPFKFMMEIDRLAVDLHRLGDKSVTELKKCVIIVSGLPTDYEMEC
RMLENNPVGLNRAEIERVAGNQYNRLLRQQHNSKAMSASKGHITVNRGKR
GGRRHHPKFN*
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mRNA from alignment at H-elongata_contig163759:126..518+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163759.4033.1 ID=mRNA_H-elongata_contig163759.4033.1|Name=mRNA_H-elongata_contig163759.4033.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=393bp|location=Sequence derived from alignment at H-elongata_contig163759:126..518+ (Himanthalia elongata Himel1 dioecious)
ATGGAACCAGGTGGAGACCCATTCAAATTTATGATGGAAATTGACAGGCT
AGCAGTTGATCTCCACCGATTGGGCGACAAATCCGTGACTGAATTAAAAA
AATGCGTAATTATCGTATCTGGTCTCCCTACTGACTACGAGATGGAGTGC
CGCATGTTGGAAAATAACCCTGTTGGTCTTAACAGGGCTGAGATTGAGCG
TGTCGCAGGGAATCAGTACAACAGACTTCTCAGGCAACAACATAATTCGA
AGGCTATGTCGGCATCGAAGGGCCACATCACGGTGAATCGCGGAAAGAGG
GGGGGCAGAAGACACCACCCCAAATTTAACTGAAAGTGCTTTAATTGCGG
AGTAGGAGGCCACTACGCTCGGGACTGCAGGACGAGTGAGGAA
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Coding sequence (CDS) from alignment at H-elongata_contig163759:126..518+

>mRNA_H-elongata_contig163759.4033.1 ID=mRNA_H-elongata_contig163759.4033.1|Name=mRNA_H-elongata_contig163759.4033.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig163759:126..518+ (Himanthalia elongata Himel1 dioecious)
ATGGAACCAGGTGGAGACCCATTCAAATTTATGATGGAAATTGACAGGCT
AGCAGTTGATCTCCACCGATTGGGCGACAAATCCGTGACTGAATTAAAAA
AATGCGTAATTATCGTATCTGGTCTCCCTACTGACTACGAGATGGAGTGC
CGCATGTTGGAAAATAACCCTGTTGGTCTTAACAGGGCTGAGATTGAGCG
TGTCGCAGGGAATCAGTACAACAGACTTCTCAGGCAACAACATAATTCGA
AGGCTATGTCGGCATCGAAGGGCCACATCACGGTGAATCGCGGAAAGAGG
GGGGGCAGAAGACACCACCCCAAATTTAACTGAATGGAACCAGGTGGAGA
CCCATTCAAATTTATGATGGAAATTGACAGGCTAGCAGTTGATCTCCACC
GATTGGGCGACAAATCCGTGACTGAATTAAAAAAATGCGTAATTATCGTA
TCTGGTCTCCCTACTGACTACGAGATGGAGTGCCGCATGTTGGAAAATAA
CCCTGTTGGTCTTAACAGGGCTGAGATTGAGCGTGTCGCAGGGAATCAGT
ACAACAGACTTCTCAGGCAACAACATAATTCGAAGGCTATGTCGGCATCG
AAGGGCCACATCACGGTGAATCGCGGAAAGAGGGGGGGCAGAAGACACCA
CCCCAAATTTAACTGA
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