mRNA_H-elongata_contig163598.4024.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: D7G1X2_ECTSI (Hypothetical inner membrane leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1X2_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.620e-24 Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1
Query: 1 FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFH 177
F +VLNAGTHG+GFV AIIGA +LMTEAS+ GKS EHFWGC+IFS SLMFLYLASTL+H
Sbjct: 243 FEEVLNAGTHGVGFVAAIIGAFLLMTEASQEGKSPEHFWGCAIFSASLMFLYLASTLYH 301
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: A0A835ZJF6_9STRA (Inner membrane leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJF6_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 3.180e-16 Identity = 35/59 (59.32%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 1 FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFH 177
F +VLN+ +H LGF+++IIG I+LM+EAS P +S FW C++FS SLM LYL+STLFH
Sbjct: 218 FEEVLNSLSHALGFIMSIIGTILLMSEASGPERSPVQFWACAVFSTSLMILYLSSTLFH 276
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: K8YVT8_NANGC (Hemolysin iii n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YVT8_NANGC) HSP 1 Score: 76.6 bits (187), Expect = 7.910e-15 Identity = 29/59 (49.15%), Postives = 47/59 (79.66%), Query Frame = 1
Query: 1 FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFH 177
F ++LN+ THGLGF+ +++G ++LM+ AS PG + H+W C +FS+SLM LY++S+L+H
Sbjct: 300 FEEILNSLTHGLGFIASVVGTLLLMSAASAPGTTPYHWWSCLLFSLSLMMLYISSSLYH 358
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: A0A7S2UA44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA44_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 4.000e-10 Identity = 24/59 (40.68%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 1 FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFH 177
F++V+N THG+G +L ++G L +S+EH W C+++S+SL+ LY++STL+H
Sbjct: 29 FQEVMNCLTHGMGILLCVLGGTALSNRVRD--RSSEHVWSCAVYSISLLCLYVSSTLYH 85
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: A0A192H3Y8_9LACO (Hemolysin III n=3 Tax=Loigolactobacillus TaxID=2767889 RepID=A0A192H3Y8_9LACO) HSP 1 Score: 62.0 bits (149), Expect = 4.470e-10 Identity = 28/63 (44.44%), Postives = 45/63 (71.43%), Query Frame = 1
Query: 4 RKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFHRRVFN 192
+VLNA THG+GFVL+++G I L+ +A+ G++ + +I+ ++LM LYL+STLFH +F
Sbjct: 18 NEVLNAVTHGIGFVLSVVGLIFLLIKANTIGQTVAY----TIYGITLMILYLSSTLFHSLIFT 76
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: A0A1I1HD34_9LACO (Hemolysin III n=1 Tax=Fructobacillus durionis TaxID=283737 RepID=A0A1I1HD34_9LACO) HSP 1 Score: 57.8 bits (138), Expect = 1.720e-8 Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 7 KVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFHRRVFN 192
+VLNA THGLGF+LAII +I L+ + S+ SA ++ S+ LASTLFH VF
Sbjct: 13 EVLNASTHGLGFILAIIASICLLVKVSKESPSAIELAAVIVYVSSISLFLLASTLFHSLVFT 74
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: UPI001BD25DEF (hemolysin III family protein n=1 Tax=Fructobacillus TaxID=559173 RepID=UPI001BD25DEF) HSP 1 Score: 56.6 bits (135), Expect = 4.660e-8 Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 1
Query: 7 KVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFHRRVFN 192
+VLNA THGLGFVLA+I A L+ + S+ + SI+ +S+ LASTLFH VF
Sbjct: 13 EVLNAATHGLGFVLALIAACFLIVKLSKHDMTPIEIGAISIYLLSISLFLLASTLFHALVFT 74
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: A0A3R9YXJ7_9ENTE (Hemolysin III n=1 Tax=Vagococcus humatus TaxID=1889241 RepID=A0A3R9YXJ7_9ENTE) HSP 1 Score: 55.8 bits (133), Expect = 9.130e-8 Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1
Query: 1 FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFHRRVFN 192
+ + LNA THGLG L+I G I+L+ +AS+ S +H + I+ VSL+ L+L+STLFH +F
Sbjct: 13 WNETLNAVTHGLGTGLSITGLILLLIKASQLA-SIKHLFAYLIYGVSLIILFLSSTLFHSLIFT 75
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: UPI0003797819 (hemolysin III family protein n=1 Tax=Geopsychrobacter electrodiphilus TaxID=225196 RepID=UPI0003797819) HSP 1 Score: 55.8 bits (133), Expect = 9.750e-8 Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1
Query: 4 RKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFH 177
++ N+ THG+G +LAIIG ++++ + R G H CSIF V+L+F Y ASTL+H
Sbjct: 14 EEIANSVTHGIGILLAIIGLVVMLYFSERYGNR-WHLVSCSIFGVTLVFSYTASTLYH 70
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Match: S0RXP7_ENTAV (Hemolysin III family channel protein n=26 Tax=Enterococcaceae TaxID=81852 RepID=S0RXP7_ENTAV) HSP 1 Score: 55.5 bits (132), Expect = 1.240e-7 Identity = 28/63 (44.44%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 4 RKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFLYLASTLFHRRVFN 192
+VLNA THG+G VL+I+G + L+ +A S H+ I+ VSL+ L+LASTL+H +F
Sbjct: 13 NEVLNAVTHGIGVVLSIVGFVFLLKKAD----SGLHYVSFIIYGVSLLLLFLASTLYHSLIFT 71 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163598.4024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig163598.4024.1 >prot_H-elongata_contig163598.4024.1 ID=prot_H-elongata_contig163598.4024.1|Name=mRNA_H-elongata_contig163598.4024.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp FRKVLNAGTHGLGFVLAIIGAIILMTEASRPGKSAEHFWGCSIFSVSLMFback to top mRNA from alignment at H-elongata_contig163598:330..521- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig163598.4024.1 ID=mRNA_H-elongata_contig163598.4024.1|Name=mRNA_H-elongata_contig163598.4024.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=192bp|location=Sequence derived from alignment at H-elongata_contig163598:330..521- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig163598:330..521- >mRNA_H-elongata_contig163598.4024.1 ID=mRNA_H-elongata_contig163598.4024.1|Name=mRNA_H-elongata_contig163598.4024.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig163598:330..521- (Himanthalia elongata Himel1 dioecious)back to top |