mRNA_H-elongata_contig163549.4021.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163549.4021.1
Unique NamemRNA_H-elongata_contig163549.4021.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163549.4021.1 vs. uniprot
Match: D7FR38_ECTSI (AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR38_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 3.250e-33
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:   28 VIDFGGATYEHDSHASIVNTRQYRAPEVILGMRWLYPSDLWSIGCIIAELFLGDLLFAT 204
            VIDFGGATYEHDSHAS+VNTRQYRAPEVILG+RWLYPSDLWS+GCIIAELFLGDLLFAT
Sbjct:  181 VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFAT 239
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BLAST of mRNA_H-elongata_contig163549.4021.1 vs. uniprot
Match: A0A6H5L2A1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 8.430e-32
Identity = 56/59 (94.92%), Postives = 59/59 (100.00%), Query Frame = 1 
Query:   28 VIDFGGATYEHDSHASIVNTRQYRAPEVILGMRWLYPSDLWSIGCIIAELFLGDLLFAT 204
            VIDFGGATYEHDSHAS+VNTRQYRAPEVILG+RWLYPSDLWS+GCIIAELFLGDLLFAT
Sbjct:  588 VIDFGGATYEHDSHASVVNTRQYRAPEVILGLRWLYPSDLWSVGCIIAELFLGDLLFAT 646
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BLAST of mRNA_H-elongata_contig163549.4021.1 vs. uniprot
Match: A0A7S2H0F0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H0F0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.230e-27
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:   13 STPFTVIDFGGATYEHDSHASIVNTRQYRAPEVILGMRWLYPSDLWSIGCIIAELFLGDLLFAT 204
            ST   VIDFGGATY+H+  +S+VNTRQYRAPEVILG+ W  PSDLWS GCIIAEL++G+LLFAT
Sbjct:   45 STKIKVIDFGGATYDHEKKSSVVNTRQYRAPEVILGLGWSTPSDLWSAGCIIAELYMGELLFAT 108
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BLAST of mRNA_H-elongata_contig163549.4021.1 vs. uniprot
Match: A0A7S2XI48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XI48_9STRA)

HSP 1 Score: 105 bits (262), Expect = 7.420e-27
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:   13 STPFTVIDFGGATYEHDSHASIVNTRQYRAPEVILGMRWLYPSDLWSIGCIIAELFLGDLLFAT 204
            ST   VIDFGGATY+H+  +S+VNTRQYRAPEVILG+ W  PSDLWS GCIIAEL++G+LLFAT
Sbjct:   30 STQIKVIDFGGATYDHEKKSSVVNTRQYRAPEVILGLGWNMPSDLWSAGCIIAELYMGELLFAT 93
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BLAST of mRNA_H-elongata_contig163549.4021.1 vs. uniprot
Match: A0A5D6XR46_9STRA (Protein kinase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR46_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.240e-25
Identity = 48/68 (70.59%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    1 PHACSTPFTVIDFGGATYEHDSHASIVNTRQYRAPEVILGMRWLYPSDLWSIGCIIAELFLGDLLFAT 204
            P AC+    +IDFGGATYE +S +SI+NTRQYR+PEVILG+ W YPSD+WS GCIIAEL+LG+LLFAT
Sbjct:  320 PPACNA-VKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSDIWSAGCIIAELYLGELLFAT 386
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BLAST of mRNA_H-elongata_contig163549.4021.1 vs. uniprot
Match: H3G737_PHYRM (Protein kinase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=H3G737_PHYRM)

HSP 1 Score: 103 bits (256), Expect = 9.230e-25
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:   28 VIDFGGATYEHDSHASIVNTRQYRAPEVILGMRWLYPSDLWSIGCIIAELFLGDLLFAT 204
            +IDFGGATYE +S +SI+NTRQYR+PEVILG+ W YPSD+WS GCIIAEL+LG+LLFAT
Sbjct:  188 LIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSDIWSAGCIIAELYLGELLFAT 246
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BLAST of mRNA_H-elongata_contig163549.4021.1 vs. uniprot
Match: A0A7S1XW47_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW47_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.020e-24
Identity = 41/59 (69.49%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:   28 VIDFGGATYEHDSHASIVNTRQYRAPEVILGMRWLYPSDLWSIGCIIAELFLGDLLFAT 204
            +IDFGGATYEH+ H ++++TRQYRAPEV LG+ W YPSD+WS+GCI+AELF G+LLF+T
Sbjct:   63 LIDFGGATYEHEYHGNVISTRQYRAPEVTLGLDWSYPSDVWSVGCIVAELFSGELLFST 121
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BLAST of mRNA_H-elongata_contig163549.4021.1 vs. uniprot
Match: A0A2P4Y3X6_9STRA (CMGC/CLK protein kinase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y3X6_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.430e-24
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:   28 VIDFGGATYEHDSHASIVNTRQYRAPEVILGMRWLYPSDLWSIGCIIAELFLGDLLFAT 204
            +IDFGGATYE +S +SI+NTRQYR+PEVILG+ W YPSD+WS GCIIAEL+LG+LLFAT
Sbjct:  212 LIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSDIWSAGCIIAELYLGELLFAT 270
[Close]
BLAST of mRNA_H-elongata_contig163549.4021.1 vs. uniprot
Match: A0A024G4E2_9STRA (Protein kinase domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G4E2_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.480e-24
Identity = 46/68 (67.65%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:    1 PHACSTPFTVIDFGGATYEHDSHASIVNTRQYRAPEVILGMRWLYPSDLWSIGCIIAELFLGDLLFAT 204
            P AC+    +IDFGGATY+ +S + I+NTRQYR+PEVILG+ W YPSD+WS GCI+AEL+LGDLLFAT
Sbjct:  321 PPACNA-VRLIDFGGATYDDESKSQIINTRQYRSPEVILGLGWSYPSDIWSAGCIVAELYLGDLLFAT 387
[Close]
BLAST of mRNA_H-elongata_contig163549.4021.1 vs. uniprot
Match: A0A0P1A6K3_PLAHL (Cmgc clk protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A6K3_PLAHL)

HSP 1 Score: 103 bits (257), Expect = 2.960e-24
Identity = 46/64 (71.88%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:   13 STPFTVIDFGGATYEHDSHASIVNTRQYRAPEVILGMRWLYPSDLWSIGCIIAELFLGDLLFAT 204
            S    +IDFGGATYE +S +SI+NTRQYR+PEVILG+ W YPSD+WS GCIIAEL+LG+LLFAT
Sbjct:  409 SNAVKLIDFGGATYEDESKSSIINTRQYRSPEVILGLGWSYPSDIWSAGCIIAELYLGELLFAT 472
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163549.4021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FR38_ECTSI3.250e-3394.92AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1) kinas... [more]
A0A6H5L2A1_9PHAE8.430e-3294.92Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S2H0F0_9STRA3.230e-2773.44Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2XI48_9STRA7.420e-2773.44Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A5D6XR46_9STRA6.240e-2570.59Protein kinase domain-containing protein n=1 Tax=P... [more]
H3G737_PHYRM9.230e-2576.27Protein kinase domain-containing protein n=4 Tax=P... [more]
A0A7S1XW47_9STRA1.020e-2469.49Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2P4Y3X6_9STRA1.430e-2476.27CMGC/CLK protein kinase (Fragment) n=1 Tax=Phytoph... [more]
A0A024G4E2_9STRA2.480e-2467.65Protein kinase domain-containing protein n=1 Tax=A... [more]
A0A0P1A6K3_PLAHL2.960e-2471.88Cmgc clk protein kinase n=1 Tax=Plasmopara halsted... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163549contigH-elongata_contig163549:400..603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.4
Seed ortholog evalue2.2e-20
Seed eggNOG ortholog115417.EPrPW00000021129
KEGG koko:K00924,ko:K08287,ko:K08823
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010468,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031974,GO:0031981,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043484,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045111,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0140096,GO:1901564
EggNOG free text desc.Serine threonine protein kinase. Source PGD
EggNOG OGs1MEC1@121069,KOG0667@1,KOG0671@2759
EC2.7.12.1
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001,ko03041
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929957.1906753-CDS-H-elongata_contig163549:399..6031622929957.1906753-CDS-H-elongata_contig163549:399..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163549 400..603 +
1691679223.0723274-CDS-H-elongata_contig163549:399..6031691679223.0723274-CDS-H-elongata_contig163549:399..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163549 400..603 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163549.4021.1prot_H-elongata_contig163549.4021.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163549 400..603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163549.4021.1

>prot_H-elongata_contig163549.4021.1 ID=prot_H-elongata_contig163549.4021.1|Name=mRNA_H-elongata_contig163549.4021.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
PHACSTPFTVIDFGGATYEHDSHASIVNTRQYRAPEVILGMRWLYPSDLW
SIGCIIAELFLGDLLFAT
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mRNA from alignment at H-elongata_contig163549:400..603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163549.4021.1 ID=mRNA_H-elongata_contig163549.4021.1|Name=mRNA_H-elongata_contig163549.4021.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig163549:400..603+ (Himanthalia elongata Himel1 dioecious)
CCCCACGCATGCTCTACACCATTTACAGTGATCGACTTCGGCGGTGCCAC
CTACGAGCACGACTCGCACGCCTCCATAGTGAACACCCGGCAGTACCGTG
CGCCCGAAGTGATCCTGGGGATGCGCTGGCTGTACCCGTCGGATCTCTGG
TCCATTGGCTGCATTATCGCCGAGTTATTTCTCGGGGATCTGCTGTTCGC
GACG
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Coding sequence (CDS) from alignment at H-elongata_contig163549:400..603+

>mRNA_H-elongata_contig163549.4021.1 ID=mRNA_H-elongata_contig163549.4021.1|Name=mRNA_H-elongata_contig163549.4021.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig163549:400..603+ (Himanthalia elongata Himel1 dioecious)
CCCCACGCATGCTCTACACCATTTACAGTGATCGACTTCGGCGGTGCCAC
CTACGAGCACGACTCGCACGCCTCCATAGTGAACACCCGGCAGTACCGTG
CGCCCGAAGTGATCCTGGGGATGCGCTGGCTGTACCCGTCGGATCTCTGG
TCCATTGGCTGCATTATCGCCGAGTTATTTCTCGGGGATCTGCTGTTCGC
GACGCCCCACGCATGCTCTACACCATTTACAGTGATCGACTTCGGCGGTG
CCACCTACGAGCACGACTCGCACGCCTCCATAGTGAACACCCGGCAGTAC
CGTGCGCCCGAAGTGATCCTGGGGATGCGCTGGCTGTACCCGTCGGATCT
CTGGTCCATTGGCTGCATTATCGCCGAGTTATTTCTCGGGGATCTGCTGT
TCGCGACG
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