mRNA_H-elongata_contig16350.4019.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16350.4019.1
Unique NamemRNA_H-elongata_contig16350.4019.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: D7FV84_ECTSI (Pseudouridine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV84_ECTSI)

HSP 1 Score: 313 bits (803), Expect = 4.650e-95
Identity = 169/289 (58.48%), Postives = 206/289 (71.28%), Query Frame = 2 
Query:    2 VDHLRKPLHFTRKLDGPEGMWTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLYKRCLPEDPLCPTVRQVKEILWRRLEQTSRSLREAAS----KLSMREENRAENRITHYD--ERGVGSAEYVTNEQEIHSGSRA-PVSDIRRGGGGSASSFA--KNVSRILTICIDFARRDLHEAPEGSDGDSDGVENSCGDEERSLAQARAVPPNEAHMICGYRKSQIERLGLEYSTM 841
            +D L++PLHF+RKLDGP G WTKPAEARVL+T+TF  GQPVPWRFKPGT A+ITWIE+VLREGKNRQIRRLCRRSE+ELTRLHR+SVGPI+LGD++E  CR+LTR+EV+ LYKRCLPEDPLCPT+  V++IL  RL QT+R +R  A     +   RE + A + +   D  ER            +   G R  P    +  G     +FA  ++++ I+   IDFARRDLHE P G DG+S G +  C  E+ SLAQARAVPPNE HM+CGYR SQIERLGL Y TM
Sbjct:  101 MDLLQEPLHFSRKLDGPGGSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVEEGSCRELTRQEVEALYKRCLPEDPLCPTIDAVQDILQSRLSQTARRIRTTAEVGGHRFKAREHSSAMD-VPQKDMPERPTAEDAEQRRAAKARDGERGCPCRTTQGPGRRRVKAFATEEDLASIMKRLIDFARRDLHETPAGPDGESAGPDY-CPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 387
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BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A6H5L3F2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F2_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 1.820e-85
Identity = 157/272 (57.72%), Postives = 188/272 (69.12%), Query Frame = 2 
Query:   56 GMWTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLYKRCLPEDPLCPTVRQVKEILWRRLEQTSRSLREAASKLSMREENRAENRITHYDERGVGSAEYVTNEQ-------EIHSGS-RAPVSDIRRGGGGSASSFA--KNVSRILTICIDFARRDLHEAPEGSDGDSDGVENSCGDEERSLAQARAVPPNEAHMICGYRKSQIERLGLEYSTM 841
            G WTKPAEARVL+T+TF  GQPVPWRFKPGT A+ITWIE+VLREGKNRQIRRLCRRSE+ELTRLHR+SVGPI+LGD+ E  CR+LTRREV+ LYKRCLPEDPLCPT+  V++IL  RL QT+R +R AA     R E R  +      ++     E  T E        ++  G    P           A +FA  ++++ I+   IDF+RRDLHE P G DG+S G +  C  E+ SLAQARAVPPNE HM+CGYR SQIERLGL Y TM
Sbjct:   15 GSWTKPAEARVLLTKTFKTGQPVPWRFKPGTVATITWIEVVLREGKNRQIRRLCRRSEFELTRLHRISVGPIVLGDVAEGSCRELTRREVEALYKRCLPEDPLCPTIDAVQDILKSRLAQTARRIRTAAEVGGHRFEAREHSSAMDVPQKDA--PERPTREDAEQRWAAKVRDGECGCPXXXXXXXXXXRAKAFAGEEDLASIVKRLIDFSRRDLHETPAGPDGESAGPDY-CPGEKESLAQARAVPPNETHMVCGYRSSQIERLGLTYGTM 283
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BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A6H5L486_9PHAE (TMP-TENI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L486_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 5.480e-23
Identity = 55/82 (67.07%), Postives = 64/82 (78.05%), Query Frame = -3 
Query: 1734 QVGTMFATPSHPGKDPEGVALLKKVRRHLEAEGLGRVLVIGVGGIDRSKCGIIAAAGADGVAAIRCLCDGEDSEGEARGLME 1979
            QVGTMFAT SHPGK PEGV +L  VRR L+ EGL  VLV+GVGGID S CG + AAG DGVAAIRCLC   D+EG+AR +++
Sbjct:  230 QVGTMFATQSHPGKTPEGVGMLNDVRRQLQVEGLDVVLVLGVGGIDASNCGDVVAAGGDGVAAIRCLCSSSDAEGQARRIVQ 311
[Close]
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A533ZMC8_9BACT (Pseudouridine synthase n=5 Tax=unclassified Nitrospirae TaxID=1298915 RepID=A0A533ZMC8_9BACT)

HSP 1 Score: 77.4 bits (189), Expect = 3.370e-12
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 2 
Query:   53 EGMWTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLYK 340
            +G  T+PAE R+L        +PVP RF+     +  W+E+ LREG NRQ+RR+    E+   RL R+++GPIMLGDL+    R L   E+  +Y+
Sbjct:  108 KGKRTRPAEVRLLSDAPELPDRPVPIRFRKNVPTA--WLEITLREGLNRQVRRMTAAVEHPTVRLVRIAIGPIMLGDLQPGHWRDLANSEIDQIYR 201
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BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A1G1IG46_9BACT (Pseudouridine synthase n=2 Tax=unclassified Nitrospirae TaxID=1298915 RepID=A0A1G1IG46_9BACT)

HSP 1 Score: 74.3 bits (181), Expect = 2.040e-11
Identity = 37/95 (38.95%), Postives = 57/95 (60.00%), Query Frame = 2 
Query:   53 EGMWTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLY 337
            +G+ T+PAE RVL        + VP RF+     +  W+ + LREG NRQ+RR+     +   RL R+++GP+ LGDL+    R++T RE+K +Y
Sbjct:   97 KGIRTRPAEVRVLPEEPAFPDRAVPIRFRKSVPTA--WLRITLREGMNRQVRRMTAAVGHPTVRLIRIAIGPVALGDLEPGHWREMTSREIKHIY 189
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BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A838IEP5_9DELT (Pseudouridine synthase n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IEP5_9DELT)

HSP 1 Score: 74.3 bits (181), Expect = 2.790e-11
Identity = 46/118 (38.98%), Postives = 64/118 (54.24%), Query Frame = 2 
Query:   11 LRKPLHFTRKLDGPEGMWTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLYKRCLPEDPL 364
            L +PL       GP G  T+PA ARV+  R  T                 +WIELV+ EG++RQ+R+LC RS  ++ +L R+ +GP+ LG+L+   CR L R EV  LY   L +D L
Sbjct:   90 LEEPLK-----SGP-GKTTEPARARVVERRDKT-----------------SWIELVICEGRHRQVRKLCERSGLQIRKLRRMRLGPLELGELRLRWCRPLERAEVAALYAAALADDAL 184
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BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A1E4DLX0_9BACT (Pseudouridine synthase n=1 Tax=Nitrospira sp. SCN 59-13 TaxID=1660252 RepID=A0A1E4DLX0_9BACT)

HSP 1 Score: 73.9 bits (180), Expect = 3.020e-11
Identity = 39/94 (41.49%), Postives = 57/94 (60.64%), Query Frame = 2 
Query:   56 GMWTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLY 337
            G  T+PA+AR+L        +PVP RF+     +  W+EL LREG NRQ+RR+     +   RL R+++GPI LGDL+    R+LT +EV  ++
Sbjct:  102 GKRTRPAQARLLEESPHLPDRPVPIRFRKHVPTA--WLELTLREGMNRQVRRMTAAVGHPTLRLVRIAIGPIALGDLQPGEWRELTTQEVAAIF 193
[Close]
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A532F5I2_9BACT (Pseudouridine synthase n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532F5I2_9BACT)

HSP 1 Score: 72.8 bits (177), Expect = 9.820e-11
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 2 
Query:   56 GMWTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLY 337
            G  TKPAE R+L        +PVP RF+     +  W+E++LREG NRQ+RR+         RL RV++GPI+LGDL     R +T  E+  +Y
Sbjct:  113 GKKTKPAEVRLLPDNPQLPDRPVPIRFRKNVPTA--WLEIILREGLNRQVRRMTAAVGNPTLRLVRVAIGPIVLGDLNPGDWRNVTSGEISQIY 204
[Close]
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: B3U4M3_9BACT (Pseudouridine synthase n=5 Tax=Nitrospira TaxID=1234 RepID=B3U4M3_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 1.000e-10
Identity = 40/94 (42.55%), Postives = 55/94 (58.51%), Query Frame = 2 
Query:   56 GMWTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLY 337
            G  TKPA+AR+L+       +PVP RF+     +  W+EL LREG NRQ+RR+     +   RL RV++GPI LG L     R+LT+ E   +Y
Sbjct:  101 GRRTKPAQARLLLEAPSIPERPVPIRFRKHVPTA--WLELTLREGMNRQVRRMTAAVGHPTLRLVRVAIGPITLGALLPGQWRELTKAETAEIY 192
[Close]
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Match: A0A532DIV7_9BACT (Pseudouridine synthase n=2 Tax=Nitrospira sp. TaxID=70125 RepID=A0A532DIV7_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 1.810e-10
Identity = 39/94 (41.49%), Postives = 55/94 (58.51%), Query Frame = 2 
Query:   56 GMWTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIRRLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLY 337
            G  TKPAE R+L        +PVP RF+     +  W+E+ LREG NRQ+RR+     +   RL RV+VGPI+LG ++    R LT  E++ +Y
Sbjct:   98 GKITKPAEVRLLPDDPQLPDRPVPIRFRKNVPTA--WVEMTLREGLNRQVRRMTASVGHPTLRLVRVAVGPIVLGGIQPGEWRDLTSSEIEQIY 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16350.4019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV84_ECTSI4.650e-9558.48Pseudouridine synthase n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5L3F2_9PHAE1.820e-8557.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L486_9PHAE5.480e-2367.07TMP-TENI domain-containing protein n=2 Tax=Ectocar... [more]
A0A533ZMC8_9BACT3.370e-1240.63Pseudouridine synthase n=5 Tax=unclassified Nitros... [more]
A0A1G1IG46_9BACT2.040e-1138.95Pseudouridine synthase n=2 Tax=unclassified Nitros... [more]
A0A838IEP5_9DELT2.790e-1138.98Pseudouridine synthase n=1 Tax=Bradymonadaceae bac... [more]
A0A1E4DLX0_9BACT3.020e-1141.49Pseudouridine synthase n=1 Tax=Nitrospira sp. SCN ... [more]
A0A532F5I2_9BACT9.820e-1141.49Pseudouridine synthase n=1 Tax=Nitrospira sp. TaxI... [more]
B3U4M3_9BACT1.000e-1042.55Pseudouridine synthase n=5 Tax=Nitrospira TaxID=12... [more]
A0A532DIV7_9BACT1.810e-1041.49Pseudouridine synthase n=2 Tax=Nitrospira sp. TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16350contigH-elongata_contig16350:1166..5744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score287.0
Seed ortholog evalue9.1e-75
Seed eggNOG ortholog2880.D7FV84
EggNOG free text desc.RNA pseudouridylate synthase
EggNOG OGs2D5AV@1,2SXY6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPseudouridine synthase, catalytic domain
Ec32 orthologEc-14_000160.1
Exons5
Model size2716
Cds size786
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.8153641-UTR-H-elongata_contig16350:1165..12211622929956.8153641-UTR-H-elongata_contig16350:1165..1221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16350 1166..1221 +
1691679222.9418387-UTR-H-elongata_contig16350:1165..12211691679222.9418387-UTR-H-elongata_contig16350:1165..1221Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16350 1166..1221 +
1622929956.836333-UTR-H-elongata_contig16350:1566..15681622929956.836333-UTR-H-elongata_contig16350:1566..1568Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16350 1567..1568 +
1691679222.9532464-UTR-H-elongata_contig16350:1566..15681691679222.9532464-UTR-H-elongata_contig16350:1566..1568Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16350 1567..1568 +
1622929956.908346-UTR-H-elongata_contig16350:3489..49781622929956.908346-UTR-H-elongata_contig16350:3489..4978Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16350 3490..4978 +
1691679222.9907389-UTR-H-elongata_contig16350:3489..49781691679222.9907389-UTR-H-elongata_contig16350:3489..4978Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16350 3490..4978 +
1622929956.921163-UTR-H-elongata_contig16350:5361..57441622929956.921163-UTR-H-elongata_contig16350:5361..5744Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16350 5362..5744 +
1691679222.999372-UTR-H-elongata_contig16350:5361..57441691679222.999372-UTR-H-elongata_contig16350:5361..5744Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16350 5362..5744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.849538-CDS-H-elongata_contig16350:1568..16851622929956.849538-CDS-H-elongata_contig16350:1568..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16350 1569..1685 +
1691679222.9626663-CDS-H-elongata_contig16350:1568..16851691679222.9626663-CDS-H-elongata_contig16350:1568..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16350 1569..1685 +
1622929956.8732684-CDS-H-elongata_contig16350:2474..25271622929956.8732684-CDS-H-elongata_contig16350:2474..2527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16350 2475..2527 +
1691679222.9718795-CDS-H-elongata_contig16350:2474..25271691679222.9718795-CDS-H-elongata_contig16350:2474..2527Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16350 2475..2527 +
1622929956.8900278-CDS-H-elongata_contig16350:2873..34891622929956.8900278-CDS-H-elongata_contig16350:2873..3489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16350 2874..3489 +
1691679222.9815319-CDS-H-elongata_contig16350:2873..34891691679222.9815319-CDS-H-elongata_contig16350:2873..3489Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16350 2874..3489 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16350.4019.1prot_H-elongata_contig16350.4019.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16350 1569..3489 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16350.4019.1

>prot_H-elongata_contig16350.4019.1 ID=prot_H-elongata_contig16350.4019.1|Name=mRNA_H-elongata_contig16350.4019.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=262bp
MWTKPAEARVLMTRTFTKGQPVPWRFKPGTTASITWIELVLREGKNRQIR
RLCRRSEYELTRLHRVSVGPIMLGDLKEACCRQLTRREVKTLYKRCLPED
PLCPTVRQVKEILWRRLEQTSRSLREAASKLSMREENRAENRITHYDERG
VGSAEYVTNEQEIHSGSRAPVSDIRRGGGGSASSFAKNVSRILTICIDFA
RRDLHEAPEGSDGDSDGVENSCGDEERSLAQARAVPPNEAHMICGYRKSQ
IERLGLEYSTM*
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mRNA from alignment at H-elongata_contig16350:1166..5744+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16350.4019.1 ID=mRNA_H-elongata_contig16350.4019.1|Name=mRNA_H-elongata_contig16350.4019.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4579bp|location=Sequence derived from alignment at H-elongata_contig16350:1166..5744+ (Himanthalia elongata Himel1 dioecious)
GGTTGACCATCTGAGAAAGCCCTTACACTTCACCCGCAAGCTCGATGGAC
CAGAGGGTAAGCAACCGACCGTTTGTAGGGAACTCGGTGGAACTAGTTCA
TTGTTGCTCGTATTTTTGTCGTTGTGTCCCCCCACCGTTTCAGGGTATCG
TATTGTATCGCATAGTATTGTATCGTATTGTATTGTATCATCACCCCTTG
CAGTGGCTAGGCTTCGAGGTCGATCATCCTTGATCGATCGATCCATTTGC
TACTGGTAATGCCTTAGAGCTATACCATACTATTACTATAATATAGCTAC
TGACCGATAGTAGCCTCCAACAGGGCCATGCCATGTTGTGTGATGTATCG
CATGGATTGATTGCATTGTGCACCCATCCCATCGATGTGGATCATGATTA
GGGATGTGGACCAAGCCCGCTGAAGCGAGGGTATTGATGACCAGAACCTT
CACAAAGGGTCAGCCTGTGCCATGGAGATTCAAGCCGGGAACAACAGCTT
CAATCACATGGATTGAGCTCGTGAGCAGTAATAGCCTATAGCCTATAGCT
TCTAGCCTCTCTTGCAGTCCCATTATAGTAGTAATATACTATAACCCTAA
CCCTACCATACTCTAGTACTCTATTAACAGTACGAATACATTGTTTGGAC
TACGAGGATTCACCTTCTTTCTCGCCATCCACGATAGCACTATTAAGATG
CTGGGAAATCCAAGTGTGATTAAACAAAAAGCGGTGAAATTAAGGAGGGA
CGGATGGTACTAGAGCATATTGACCACGCGTCTTCGAAAGGACGAAGCTT
TGTTCCTACATAGTCAATCGCCAATGGTGAATCGAATCCTTTCTTCTTCC
TTACTTTGCCGAAGTTGGCGCAAAAACAAATCCTATATTTCTTTTTGTCT
TTTTAGGCCACTTGTTATAGCCTATACAGTATACCTATCGCCATCACCAC
CATTCTTCCAAAGTCTAACCCTAACCCTAACCCTAACCCTATCACAACCT
TCAAGTTTCCCGTAACATGGATACAGCCTTCACACTCATCCAAGTATACC
GTATATATAGGTATATACCGTTTGCTTGTTTTTTTCCTAAATACAGTACA
GTATATGCTAAATGATATTGCTATATGTTAACCCTAACCCTACGCTCCCT
GACGAGAGAGAGGCCAATATCTCCATTATTAATAAAATACCAAGAGTACT
GAATTTGACCTGTACATCTTCCCCCCCATGCAAGTATTCCTTGAAGCAGG
TTACTTGGACTGTCTTTCCGTACCCAAATATATCGCATCTCGCATTCTGT
TGCTTTCAGGTTTTACGAGAGGGGAAGAATCGTCAGATCAGGCGTCTTTG
CCGTCGAAGCGAGTGAGACACTTGTTTGTCTCTTGTATATTGTACCTTGT
TTGGGGTGTAAGGTTAGGGTTAGTGATGATCAAAACTGGGTACACTGTAT
TGTATAATAGGGTACTTGCTTCCGTTAGAATTGCCGTCGTCTACTGCTTA
TACGGTGTTATGCTTGCCCATGACCCACAGCCAATCACAAAAATCTTCCA
ACCTCCAAACAGTTTACACTATCCACCAAGCGACTTCCCTGTACTATACC
GTCCTCGAGTGCTGATACTACCGAAATCGAAGGTATTGAACCATATAGCG
TCTAATGCAATCTGCTATCCGATGGACCTCCCTGTATCGTCTCCTGTCCA
CGAGGAAGGTACGAGTTGACCAGGTTGCATCGTGTTTCGGTCGGCCCCAT
CATGCTGGGAGACCTCAAAGAGGCGTGCTGCCGCCAGCTCACGCGGAGAG
AGGTAAAAACGTTGTACAAACGCTGTCTTCCCGAAGACCCGCTCTGCCCG
ACTGTTCGCCAAGTTAAAGAAATCCTGTGGCGTCGCCTCGAACAGACTTC
TCGCAGTTTGCGAGAAGCGGCTTCGAAGCTGTCGATGAGGGAGGAGAATC
GGGCGGAGAATCGGATAACTCACTACGACGAAAGGGGGGTGGGATCGGCG
GAATACGTTACAAATGAACAAGAAATCCATAGCGGATCACGAGCGCCGGT
GTCCGATATACGTAGAGGCGGTGGAGGAAGTGCCTCATCCTTCGCGAAAA
ACGTTTCGAGAATATTAACAATTTGTATTGATTTCGCGAGACGTGACTTG
CATGAAGCTCCGGAGGGCTCCGACGGGGATTCGGACGGTGTGGAGAATTC
CTGTGGCGACGAGGAGCGCTCTTTGGCCCAGGCGCGCGCGGTGCCGCCAA
ACGAGGCTCACATGATTTGCGGCTATCGGAAGTCTCAGATCGAGCGCCTT
GGCTTAGAGTACAGCACGATGTAGAGCTATCACCTTGACTTGCTTAAGGT
TCTGGCACACGAGGGATATTTACTTCTGGGGAGTAAAGCCTCTGGATTTT
TATTAACGATCACCGTCGCATCATTGGTGCCTTGAGATCCTTCGATCCTT
CAATCATTCAATCCTAGTCTATAAAATATGTGTTCCTACGAGAGAGAGGA
AGCCAGCTTGGAGCGGTGAACGGACATAGTTTGGGATGTTCTTAAGGAGG
TAGTTTGGTTTAGGGCGTTGGGCGGGTGGATGCTAGCTGGTGCGCCGATT
TCACAGCTCAAGGCCTGGGTACACATTTCCTCCTTATTTTCTCCAGCATG
ACGTTACCGTCACCTCGAGAAACGCAGAGGGTTTGGCCGACAACGTCGGA
GCGCGATTCCTCCGCTTTGTTGCCAAGAACGCTGCAGTTGAATACCTGTA
GAAAATAACAGACCTCAAGTTATCGGTACGTATGTCATTCCTTGCCGATT
ATCGCACCACTTACGTGAGATTTGTCGTTTACTTCAGATGATTTATTTGT
ACGATGAAAAGCACATCAGATATCGGTCTCTGTAGCCTGTGATTCAGAAT
CTGGACTGCTATAAATAGCAGTGCTTTAGACAAATCGTATCTGAGGATAT
TGTGGGGCGGCTAGGATTTTGCCGGTTCTCGGGCGGTTGGACGTGACACA
TGACATAAGGTGACCCGTTGATCTTGGTACAGCACAAAACAGTACTGGTA
CCTTTTAGAAACCATGAATCGGATTGGCTGACAAAGTTGTTACCCGTAAT
TCTTGAGTTGTTATTGAAGCTATTGCAGAGGCGATGCGCAGAAAATGCGA
ATCAATAAAAATACAAAAAAATAATAACTAGCTTTAGGCTCTAGGCGTGC
CAGCTGTAAAAGCTTCCATCAGACCCCTGGCTTCTCCTTCCGAATCTTCC
CCATCGCACAAGCAACGGATCGCCGCCACACCATCAGCCCCAGCCGCCGC
AATAATACCACATTTCGATCGGTCGATTCCTCCTACACCGATCACGAGCA
CTCTGCCGAGCCCCTCTGCCTCCAAGTGACGTCGCACCTTCTTCAGCAGG
GCAACTCCCTCGGGGTCCTTTCCTGGATGCGATGGTGTGGCGAACATGGT
GCCCACCTGCCGCCATACACCATGGGCGCTGGTTGGACACGCATTGTGTA
CTCCAGCCTCCTTCAACCGTCATTATTAGCTATTAAGCACAATTTGTCAT
GCCTTATTGTTCGGAGATTGAGAATGCCCCACGCCCCTCTCTACCTTCAA
TACTTCGAGCATTTGTCACTTCATCAGCGTTTACTCGCAGTATTGTATAG
AGGGGAGTATATAGTACTACAGTATTGTATAGAGGACAGTATATAGTACT
ACAGTATTGTATAGAGGGCAGTATATAGTACTGCAGTATTGTATAGAGGG
CAATATATATTACTACAGTATTGTATAGAGGGCAGTATATAGTACTACAG
TATTGTATAGAGGGCAGTATATAGTACTACAGTATTGTATAGAGGGCAGT
ATATAGTACTACAGTATTGTATAGAGGACAGTATATAGTACTACAGTATT
GTATAGAGGGCAGTATAAAGTACTACAGTATTGTATAGAAGGCAGTATAT
AGTACTACAGTATTGTATAGAGGACAATATATATTACTGCAGTATTGTAT
AGAGGGCAGTATATAGTACTACAGTATTGTATACCAAGGCAGTATATAGT
ACTACAGTATTGTATAGAGGCAATATATAGTACTACAGTATTGTATAGAG
GGCAGTATATAGTACTACAGTATTGTATAAAAAGGAAGAAAATAGAACTA
AAGAATGTAATAAAGGCAATATATAGTACTACAGTATTGTATAGAGGGCA
GTATATAGTACTACAGTATTGTATAGAGGGCGCTGGTGTAGAAATGCACC
TCTTTGAGATCTTGACATCTCGGCAACGGCAAGCTGTTTTATATTTATTT
ATATTTCTGAGTGAATCGCGCCACTGCTAAGAATATTGAATATAGTGCTA
GGTAGGTAGGTAGGGTAAGTAACACCCTGTCCCCGGGGTCGTTCTATTCG
AAGAGTATGGTATTGGTACGGAACTTTTCCTTGTGGAATGGTGTTGATCT
GCACGGGTGGCACGAGGTGACGGTCTAGGATGGAGTCGGAGATAGTTTAT
GGCTGTCATGGATGTGCCGTGTCGAATACGAGTTCCAAGATACAGCAGGT
AGAAAAGAAATTGAAACGGTTAGGGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig16350:1166..5744+

>mRNA_H-elongata_contig16350.4019.1 ID=mRNA_H-elongata_contig16350.4019.1|Name=mRNA_H-elongata_contig16350.4019.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1572bp|location=Sequence derived from alignment at H-elongata_contig16350:1166..5744+ (Himanthalia elongata Himel1 dioecious)
ATGTGGACCAAGCCCGCTGAAGCGAGGGTATTGATGACCAGAACCTTCAC
AAAGGGTCAGCCTGTGCCATGGAGATTCAAGCCGGGAACAACAGCTTCAA
TCACATGGATTGAGCTCATGTGGACCAAGCCCGCTGAAGCGAGGGTATTG
ATGACCAGAACCTTCACAAAGGGTCAGCCTGTGCCATGGAGATTCAAGCC
GGGAACAACAGCTTCAATCACATGGATTGAGCTCGTTTTACGAGAGGGGA
AGAATCGTCAGATCAGGCGTCTTTGCCGTCGAAGCGAGTTTTACGAGAGG
GGAAGAATCGTCAGATCAGGCGTCTTTGCCGTCGAAGCGAGTACGAGTTG
ACCAGGTTGCATCGTGTTTCGGTCGGCCCCATCATGCTGGGAGACCTCAA
AGAGGCGTGCTGCCGCCAGCTCACGCGGAGAGAGGTAAAAACGTTGTACA
AACGCTGTCTTCCCGAAGACCCGCTCTGCCCGACTGTTCGCCAAGTTAAA
GAAATCCTGTGGCGTCGCCTCGAACAGACTTCTCGCAGTTTGCGAGAAGC
GGCTTCGAAGCTGTCGATGAGGGAGGAGAATCGGGCGGAGAATCGGATAA
CTCACTACGACGAAAGGGGGGTGGGATCGGCGGAATACGTTACAAATGAA
CAAGAAATCCATAGCGGATCACGAGCGCCGGTGTCCGATATACGTAGAGG
CGGTGGAGGAAGTGCCTCATCCTTCGCGAAAAACGTTTCGAGAATATTAA
CAATTTGTATTGATTTCGCGAGACGTGACTTGCATGAAGCTCCGGAGGGC
TCCGACGGGGATTCGGACGGTGTGGAGAATTCCTGTGGCGACGAGGAGCG
CTCTTTGGCCCAGGCGCGCGCGGTGCCGCCAAACGAGGCTCACATGATTT
GCGGCTATCGGAAGTCTCAGATCGAGCGCCTTGGCTTAGAGTACAGCACG
ATGTAGGTACGAGTTGACCAGGTTGCATCGTGTTTCGGTCGGCCCCATCA
TGCTGGGAGACCTCAAAGAGGCGTGCTGCCGCCAGCTCACGCGGAGAGAG
GTAAAAACGTTGTACAAACGCTGTCTTCCCGAAGACCCGCTCTGCCCGAC
TGTTCGCCAAGTTAAAGAAATCCTGTGGCGTCGCCTCGAACAGACTTCTC
GCAGTTTGCGAGAAGCGGCTTCGAAGCTGTCGATGAGGGAGGAGAATCGG
GCGGAGAATCGGATAACTCACTACGACGAAAGGGGGGTGGGATCGGCGGA
ATACGTTACAAATGAACAAGAAATCCATAGCGGATCACGAGCGCCGGTGT
CCGATATACGTAGAGGCGGTGGAGGAAGTGCCTCATCCTTCGCGAAAAAC
GTTTCGAGAATATTAACAATTTGTATTGATTTCGCGAGACGTGACTTGCA
TGAAGCTCCGGAGGGCTCCGACGGGGATTCGGACGGTGTGGAGAATTCCT
GTGGCGACGAGGAGCGCTCTTTGGCCCAGGCGCGCGCGGTGCCGCCAAAC
GAGGCTCACATGATTTGCGGCTATCGGAAGTCTCAGATCGAGCGCCTTGG
CTTAGAGTACAGCACGATGTAG
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