mRNA_H-elongata_contig163389.4016.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163389.4016.1
Unique NamemRNA_H-elongata_contig163389.4016.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163389.4016.1 vs. uniprot
Match: A0A3P3Y1V4_PLABS (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y1V4_PLABS)

HSP 1 Score: 70.9 bits (172), Expect = 2.890e-13
Identity = 29/36 (80.56%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 DVGEGILEVEVLQWFVEPGDRVRQFDKLCEVQSDKV 108
            D+GEGI EVEVLQWFV+PGDR++QFDK+CEVQSDK 
Sbjct:   94 DIGEGIAEVEVLQWFVKPGDRIQQFDKICEVQSDKA 129
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BLAST of mRNA_H-elongata_contig163389.4016.1 vs. uniprot
Match: A0A455ZA82_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Thraustochytrium sp. LLF1b TaxID=1112570 RepID=A0A455ZA82_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.890e-13
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 DVGEGILEVEVLQWFVEPGDRVRQFDKLCEVQSDKV 108
            D+GEGI EVEVLQWFVEPGD V+QFDK+CEVQSDK 
Sbjct:   37 DIGEGIAEVEVLQWFVEPGDTVKQFDKICEVQSDKA 72
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BLAST of mRNA_H-elongata_contig163389.4016.1 vs. uniprot
Match: R1C8Z5_EMIHU (3-methyl-2-oxobutanoate dehydrogenase (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C8Z5_EMIHU)

HSP 1 Score: 66.6 bits (161), Expect = 1.290e-12
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 DVGEGILEVEVLQWFVEPGDRVRQFDKLCEVQSDKV 108
            D+GEGI EVEVLQWFV+PGD V QFD++CEVQSDK 
Sbjct:   57 DIGEGIAEVEVLQWFVKPGDTVDQFDRICEVQSDKA 92
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BLAST of mRNA_H-elongata_contig163389.4016.1 vs. uniprot
Match: D7FZ94_ECTSI (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ94_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.380e-12
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 DVGEGILEVEVLQWFVEPGDRVRQFDKLCEVQSDKV 108
            D+GEGILEVEVLQW+V PGD V QFDKLCEVQSDK 
Sbjct:  154 DIGEGILEVEVLQWYVAPGDSVSQFDKLCEVQSDKA 189
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BLAST of mRNA_H-elongata_contig163389.4016.1 vs. uniprot
Match: A0A6H5JFR0_9PHAE (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFR0_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.490e-12
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 DVGEGILEVEVLQWFVEPGDRVRQFDKLCEVQSDKV 108
            ++GEGILEVEVLQWFV PGD V QFDKLCEVQSDK 
Sbjct:    9 NIGEGILEVEVLQWFVAPGDSVSQFDKLCEVQSDKA 44
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BLAST of mRNA_H-elongata_contig163389.4016.1 vs. uniprot
Match: A0A192ZI97_9EUKA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Stygiella incarcerata TaxID=1712417 RepID=A0A192ZI97_9EUKA)

HSP 1 Score: 67.8 bits (164), Expect = 3.510e-12
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 DVGEGILEVEVLQWFVEPGDRVRQFDKLCEVQSDKV 108
            D+GEGI EVEVLQWFV+PGD+V QFD LCEVQSDK 
Sbjct:   32 DIGEGIKEVEVLQWFVKPGDKVEQFDPLCEVQSDKA 67
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BLAST of mRNA_H-elongata_contig163389.4016.1 vs. uniprot
Match: A0A7S1CPA0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CPA0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.570e-12
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 DVGEGILEVEVLQWFVEPGDRVRQFDKLCEVQSDKV 108
            D+GEGI EVEVLQWFV PGD V QFD +CEVQSDK 
Sbjct:   26 DIGEGIAEVEVLQWFVGPGDTVAQFDPVCEVQSDKA 61
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BLAST of mRNA_H-elongata_contig163389.4016.1 vs. uniprot
Match: A0A7S3BSJ7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BSJ7_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 4.720e-12
Identity = 27/36 (75.00%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 DVGEGILEVEVLQWFVEPGDRVRQFDKLCEVQSDKV 108
            D+GEGI EVE+LQWFV+PGD V+QFD+L EVQSDK 
Sbjct:   57 DIGEGIAEVEILQWFVKPGDLVQQFDRLVEVQSDKA 92
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BLAST of mRNA_H-elongata_contig163389.4016.1 vs. uniprot
Match: A0A6G1H887_9PEZI (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Aulographum hederae CBS 113979 TaxID=1176131 RepID=A0A6G1H887_9PEZI)

HSP 1 Score: 67.4 bits (163), Expect = 4.800e-12
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 DVGEGILEVEVLQWFVEPGDRVRQFDKLCEVQSDKV 108
            D+GEGI EV+V+QWFVEPG RV QFDK+CEVQSDK 
Sbjct:   56 DIGEGITEVQVIQWFVEPGARVEQFDKICEVQSDKA 91
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BLAST of mRNA_H-elongata_contig163389.4016.1 vs. uniprot
Match: A0A507CTQ6_9FUNG (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507CTQ6_9FUNG)

HSP 1 Score: 67.4 bits (163), Expect = 4.800e-12
Identity = 26/36 (72.22%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    1 DVGEGILEVEVLQWFVEPGDRVRQFDKLCEVQSDKV 108
            D+GEGI E E++QWFV+PGDR+ QFDK+CEVQSDK 
Sbjct:   74 DIGEGIAECEIIQWFVKPGDRIEQFDKICEVQSDKA 109
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163389.4016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3P3Y1V4_PLABS2.890e-1380.56Dihydrolipoamide acetyltransferase component of py... [more]
A0A455ZA82_9STRA2.890e-1383.33Dihydrolipoamide acetyltransferase component of py... [more]
R1C8Z5_EMIHU1.290e-1277.783-methyl-2-oxobutanoate dehydrogenase (Fragment) n... [more]
D7FZ94_ECTSI1.380e-1283.33Dihydrolipoamide acetyltransferase component of py... [more]
A0A6H5JFR0_9PHAE2.490e-1283.33Dihydrolipoamide acetyltransferase component of py... [more]
A0A192ZI97_9EUKA3.510e-1280.56Dihydrolipoamide acetyltransferase component of py... [more]
A0A7S1CPA0_9STRA3.570e-1277.78Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S3BSJ7_9EUKA4.720e-1275.00Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A6G1H887_9PEZI4.800e-1277.78Dihydrolipoamide acetyltransferase component of py... [more]
A0A507CTQ6_9FUNG4.800e-1272.22Dihydrolipoamide acetyltransferase component of py... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163389contigH-elongata_contig163389:123..239 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.3
Seed ortholog evalue4.4e-10
Seed eggNOG ortholog2880.D7FZ94
Preferred nameDBT
KEGG rclassRC00004,RC02727,RC02870
KEGG koko:K09699,ko:K11273,ko:K20166
KEGG ReactionR02662,R03174,R04097,R10998
KEGG Pathwayko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130
KEGG ModuleM00036
GOsGO:0003674,GO:0003824,GO:0004147,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005929,GO:0005947,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0008150,GO:0008152,GO:0009060,GO:0009295,GO:0009353,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010565,GO:0015980,GO:0016417,GO:0016740,GO:0016746,GO:0016747,GO:0016999,GO:0017144,GO:0019216,GO:0019217,GO:0019222,GO:0019752,GO:0019899,GO:0030062,GO:0030523,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031625,GO:0031974,GO:0032991,GO:0040019,GO:0042304,GO:0042645,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044389,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045239,GO:0045240,GO:0045252,GO:0045333,GO:0045723,GO:0045834,GO:0045923,GO:0045995,GO:0046662,GO:0046889,GO:0046890,GO:0048518,GO:0048520,GO:0048522,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0051094,GO:0051239,GO:0051240,GO:0055114,GO:0061062,GO:0061063,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071704,GO:0072350,GO:0080090,GO:0097458,GO:0098798,GO:0120025,GO:1901046,GO:1902494,GO:1990204,GO:1990234,GO:2000026,GO:2000241,GO:2000243
EggNOG free text desc.Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
EggNOG OGsCOG0508@1,KOG0558@2759
EC2.3.1.168,3.6.4.13
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03036,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size117
Cds size117
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.594505-CDS-H-elongata_contig163389:122..2391622929956.594505-CDS-H-elongata_contig163389:122..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163389 123..239 -
1691679222.8746006-CDS-H-elongata_contig163389:122..2391691679222.8746006-CDS-H-elongata_contig163389:122..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163389 123..239 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163389.4016.1prot_H-elongata_contig163389.4016.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163389 123..239 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163389.4016.1

>prot_H-elongata_contig163389.4016.1 ID=prot_H-elongata_contig163389.4016.1|Name=mRNA_H-elongata_contig163389.4016.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
DVGEGILEVEVLQWFVEPGDRVRQFDKLCEVQSDKVGE*
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mRNA from alignment at H-elongata_contig163389:123..239-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163389.4016.1 ID=mRNA_H-elongata_contig163389.4016.1|Name=mRNA_H-elongata_contig163389.4016.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at H-elongata_contig163389:123..239- (Himanthalia elongata Himel1 dioecious)
GATGTGGGCGAGGGCATTCTGGAGGTGGAAGTGCTGCAGTGGTTTGTGGA
ACCAGGGGATAGGGTGCGGCAGTTCGATAAGCTGTGCGAGGTGCAGAGCG
ACAAGGTGGGTGAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig163389:123..239-

>mRNA_H-elongata_contig163389.4016.1 ID=mRNA_H-elongata_contig163389.4016.1|Name=mRNA_H-elongata_contig163389.4016.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig163389:123..239- (Himanthalia elongata Himel1 dioecious)
GATGTGGGCGAGGGCATTCTGGAGGTGGAAGTGCTGCAGTGGTTTGTGGA
ACCAGGGGATAGGGTGCGGCAGTTCGATAAGCTGTGCGAGGTGCAGAGCG
ACAAGGTGGGTGAATAGGATGTGGGCGAGGGCATTCTGGAGGTGGAAGTG
CTGCAGTGGTTTGTGGAACCAGGGGATAGGGTGCGGCAGTTCGATAAGCT
GTGCGAGGTGCAGAGCGACAAGGTGGGTGAATAG
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