mRNA_H-elongata_contig16338.4014.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16338.4014.1
Unique NamemRNA_H-elongata_contig16338.4014.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16338.4014.1 vs. uniprot
Match: D8LFV0_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV0_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 2.930e-110
Identity = 178/236 (75.42%), Postives = 203/236 (86.02%), Query Frame = 1 
Query:  280 KTARTIFVGNLPTTFNTKKIRRLCKDYGTVESVRLRSVAVEGVKVDKAGDQQLVRRVCVNRGMVDEEVKNNVNAYVVFKDATSVEKALEANGAEIEGKHIRVDRARASDHDHTRSVFLGNLPLDANEEEVRALFAAKLEGADKAVEGVRLVRDKTTLVGKGFGYLLLVDRAHAAAALGVHGTKLRGRSLRVMPCGKRIKGRGGKANLGKEDHKFASFEGRRTTTVEGAQRRLKRKQ 987
            K +RT+FVGNLPT+F  KK++   K+YG VESVRLRSVAV+G+ VDKAGDQQLVR+VCVNRGMVDEEVK++VNAYVV+KD  SVEKAL ANG ++ GKH+RVDRA++ ++DHTRSVFLGNLP+DA EEEVR LFA+KLEG  K+VEGVRLVRDK TLVGKGFGY+LL DRA AAAAL + GTKL+GR LRVMPCGKR KGRGG A  G EDHKFASFEGRRTT V G  RRLKRKQ
Sbjct:  327 KESRTVFVGNLPTSFTPKKVKAAFKEYGAVESVRLRSVAVQGMAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYKDCASVEKALAANGTDVGGKHVRVDRAKSGEYDHTRSVFLGNLPMDAGEEEVRELFASKLEGGPKSVEGVRLVRDKATLVGKGFGYVLLADRALAAAALALQGTKLKGRPLRVMPCGKRTKGRGGVAKPGLEDHKFASFEGRRTTDV-GVLRRLKRKQ 561
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BLAST of mRNA_H-elongata_contig16338.4014.1 vs. uniprot
Match: A0A6H5KDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC0_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 1.350e-99
Identity = 156/210 (74.29%), Postives = 182/210 (86.67%), Query Frame = 1 
Query:  280 KTARTIFVGNLPTTFNTKKIRRLCKDYGTVESVRLRSVAVEGVKVDKAGDQQLVRRVCVNRGMVDEEVKNNVNAYVVFKDATSVEKALEANGAEIEGKHIRVDRARASDHDHTRSVFLGNLPLDANEEEVRALFAAKLEGADKAVEGVRLVRDKTTLVGKGFGYLLLVDRAHAAAALGVHGTKLRGRSLRVMPCGKRIKGRGGKANLGKE 909
            + +RT+FVGNLPT+F  KK++   K+YG VESVRLRSVAV+G  VDKAGDQQLVR+VCVNRGMVDEEVK++VNAYVV+KD  SVEKAL ANG ++ GKH+RVDRA++ ++DHTRSVFLGNLP+DA EEEVR LFA+KLEG  K+VEGVRLVRDK TLVGKGFGY+LL DRA AAAAL +HGTKL+GR LRVMPCGKR KGRGG A  G+E
Sbjct:  313 RESRTVFVGNLPTSFTPKKVKAAFKEYGAVESVRLRSVAVKGTAVDKAGDQQLVRKVCVNRGMVDEEVKSSVNAYVVYKDGASVEKALAANGTDVGGKHVRVDRAKSGEYDHTRSVFLGNLPMDAAEEEVRELFASKLEGGPKSVEGVRLVRDKATLVGKGFGYVLLADRALAAAALALHGTKLKGRPLRVMPCGKRTKGRGGVAKPGQE 522
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BLAST of mRNA_H-elongata_contig16338.4014.1 vs. uniprot
Match: A0A7R9UAS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAS7_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.400e-57
Identity = 115/244 (47.13%), Postives = 161/244 (65.98%), Query Frame = 1 
Query:  289 RTIFVGNLPTTFNTKKIRRLCKDYGTVESVRLRSVAVEGVKVDKAGDQQLVRRVCVNRGMVDEEVKNNVNAYVVFKDATSVEKALEANGAEIEGKHIRVDRARASD--HDHTRSVFLGNLPLDANEEEVRALFAAKLE---GADKAVEGVRLVRDKTTLVGKGFGYLLLVDRAHAAAALGVHGTKLRGRSLRVMPCGKRIKGRGGKANLGKEDHK------FASFEGRRTTTVEGAQRRLKRKQ 987
            RTIFVGNLP +   + + R    YG VE+VRLRS+AV+GVK+D+AG+Q L+R+V  NRG +D +VK + NAYV ++D  +V+KALEA+GAE+  +HIRVDR + S    + +R++FLG+LP   +EE+VR  F   L    G D  V+GVRL+RDK+TL+GKGFGYLLL  +A  A AL +      GR  RV  CG+R K +  + ++  E  +        SFEG R + ++GA+RRL  K+
Sbjct:   87 RTIFVGNLPVSLKKRHVERFFSRYGRVEAVRLRSMAVKGVKIDEAGNQSLMRKVAANRGELDTDVKKSCNAYVRYEDKEAVDKALEADGAELGDRHIRVDRLQGSQALFNASRTLFLGSLPYTVDEEDVRHKFIELLSASHGGD-VVQGVRLIRDKSTLLGKGFGYLLLSSKAAVADALRLPEVSFGGRVARVQTCGRRFKTQNARGDVKPEKKQKKAKRNAESFEGARASELDGARRRLASKK 329
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BLAST of mRNA_H-elongata_contig16338.4014.1 vs. uniprot
Match: W7U9S2_9STRA (Rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9S2_9STRA)

HSP 1 Score: 192 bits (488), Expect = 5.600e-53
Identity = 101/198 (51.01%), Postives = 135/198 (68.18%), Query Frame = 1 
Query:  280 KTARTIFVGNLPTTFNTKKIRRLCKDYGTVESVRLRSVAVEGVKVDKAGDQQLVRRVCVNRGMVDEEVKNNVNAYVVFKDATSVEKALEANGAEIEGKHIRVDRARASD-HDHTRSVFLGNLPLDANEEEVRALFAAKLEGADKAVEGVRLVRDKTTLVGKGFGYLLLVDRAHAAAALGVHGTKLRGRSLRVMPCGKR 870
            K  RTIFVGNLPT+ + K+++ + K+YG +ESVR RS+A+ G K+D  G+Q+L ++V  N+ ++ +  K+  NAYVVF    S E A+ AN   +E KH+RVDR  +    D  RSVFLGNLP DA E+ +RA  A +LEG    VEGVRLVRD  T  GKGFG++LL D+A  AAAL ++GT  +GR +RV  CGKR
Sbjct:  207 KERRTIFVGNLPTSISKKRVQNIFKEYGEIESVRFRSMALAGAKIDDHGNQRLAKKVSANKRLLSD-AKDTFNAYVVFLREDSAEAAIAANNRLVEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKR 403
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BLAST of mRNA_H-elongata_contig16338.4014.1 vs. uniprot
Match: A0A835YND0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND0_9STRA)

HSP 1 Score: 184 bits (467), Expect = 1.210e-50
Identity = 102/203 (50.25%), Postives = 129/203 (63.55%), Query Frame = 1 
Query:  286 ARTIFVGNLPTTFNTKKIRRLCKDYGTVESVRLRSVAVEGVKVDKAGDQQLVRRVCVNRGMVDEEVKNNVNAYVVFKDATSVEKALEANGAEIEGKHIRVDRARASDHDHTRSVFLGNLPLDANEEEVRALFAAKLEGADKAVEGVRLVRDKTTLVGKGFGYLLLVDRAHAAAALGVHGTKLRGRSLRVMPCGKRIKG-RGGK 891
            ART+FVGN+P      KI    K+YG VE+V             +AG+Q L+R+ C+  G ++E+VK++VNAY+VF+DA S   AL ANG E+ G H+RVD A     D  RSVFLGNLP D  EEEVRA F+   E    A+EGVRL+RD  T +GKGFGY+L  D A   AAL + G+ LR R LRV  CG+R KG RGG+
Sbjct:  193 ARTVFVGNVPVKLKRDKIASFFKEYGKVETVL------------EAGNQALMRKACIATGKINEKVKDSVNAYIVFQDAESARAALAANGRELNGHHLRVDSAARPTVDPARSVFLGNLPFDVREEEVRAHFSEISEDGTAAIEGVRLIRDPDTQLGKGFGYVLFRDAATVGAALRLDGSALRKRELRVHVCGRRTKGGRGGR 383
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BLAST of mRNA_H-elongata_contig16338.4014.1 vs. uniprot
Match: A0A7S2KIR5_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KIR5_9STRA)

HSP 1 Score: 178 bits (452), Expect = 3.850e-48
Identity = 109/240 (45.42%), Postives = 144/240 (60.00%), Query Frame = 1 
Query:  277 GKTARTIFVGNLPTTFNTKKIRRLCKDYGTVESVRLRSVAVEGVKVDK--AGDQQLVRRVCVNRGMVDEEVKNNVNAYVVFKDATSVEKALEANGAEI--EGKHIRVDRARASDHDHTRSVFLGNLPLDANEEEVRALFAAKLEGADKAVEGVRLVRDKTTLVGKGFGYLLLVDRAHAAAALGVHGTKLRGRSLRVMPCGKRIKGRGGKANLGKEDHKFASFEGRRTTTVEGAQRRLKRK 984
            G+  RTIFVGNLP     K++ RL  D G V S R+RSVAV+GVK+ K  AG+Q L+R+VC N  +VDE+ K  VN YVVF D  SV++AL+ N  +    G HIRVD ++ + +D+ RSVF+GNLP    EE++R  F     G D  +E VR+VRD  T+  KGF Y+L   R   A AL +HG+    R +RV  CG+R KG  G  +          +EGRR T  EGA +R+  K
Sbjct:  150 GEEDRTIFVGNLPGAITRKELARLFADCGKVTSTRIRSVAVKGVKLPKEQAGNQNLMRKVCANTNLVDEDSKKTVNGYVVFADTKSVQEALKLNNMKEPNSGLHIRVDSSKPT-YDNKRSVFVGNLPYGIMEEQLRKHFGEACGGVDN-IENVRIVRDNETMKCKGFAYVLFKSRDIVAEALRLHGSTCAKREIRVQVCGRRYKGARGNEDDNTGGRNANRYEGRRAT--EGATKRILNK 385
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BLAST of mRNA_H-elongata_contig16338.4014.1 vs. uniprot
Match: B7G077_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G077_PHATC)

HSP 1 Score: 172 bits (437), Expect = 1.630e-46
Identity = 110/248 (44.35%), Postives = 153/248 (61.69%), Query Frame = 1 
Query:  289 RTIFVGNLPTTFNTKKIRRLCKDYGTVESVRLRSVAVEGVKV--DKAGDQQLVRRVCVNRGMVDEEVKNNVNAYVVFKDATSVEKALEANGAEIEG------KHIRVDRARASDHDHTRSVFLGNLPLDANEEEVRALFAAKLEGADKAVEGVRLVRDKTTLVGKGFGYLLLVDRAHAAAALG-VHGTKLRGRSLRVMPCGKRIKGRGGKANLGKEDHKFASFEGRRTTTVE------GAQRRLKRKQ 987
            RT+FVGNLPT +N K + +L KD G VES R+RS+AV GVK+  + AG+Q+LV++VC N   VD + K++V  YVVF +  ++EKAL  N  E++       + IRVD A A ++D  RS+F+GNLP  A+E+ +   F          ++GVR+VRDK T   KGFGY+L  D++    AL  + G+    R LRVM CG+R KG+ G A + KE+ K  SFEGRR +         GA RR+ +KQ
Sbjct:   92 RTVFVGNLPTQYNRKSLAKLFKDCGKVESSRIRSLAVTGVKLPQENAGNQKLVKKVCANTSQVDTKAKSSVQGYVVFVNKDAIEKALVLNNTEVKDERTGTTRRIRVDHANA-EYDAARSIFVGNLPYTADEDSLAEHFCEGCGLNVDDIQGVRIVRDKETFQCKGFGYVLFSDQSMVTLALQRMSGSLYAKRELRVMVCGRRFKGKKGDA-MPKENKK-RSFEGRRASAPVSPAASVGALRRIIKKQ 336
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BLAST of mRNA_H-elongata_contig16338.4014.1 vs. uniprot
Match: A0A485LPI4_9STRA (Aste57867_24108 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPI4_9STRA)

HSP 1 Score: 172 bits (436), Expect = 1.680e-45
Identity = 111/238 (46.64%), Postives = 144/238 (60.50%), Query Frame = 1 
Query:  280 KTARTIFVGNLPTTFNTKKIRRLCKDYGTVESVRLRSVAVEGVKVDKAGDQQLVRRVCVNRGMVDEEVKNNVNAYVVFKDATSVEKALEANGAEIEGKHIRVDRARASDHDHTRSVFLGNLPLDANEEEVRALFAAKLEGADKA--VEGVRLVRDKTTLVGKGFGYLLLVDRAHAAAALGVHGTKLRGRSLRVMPCGKRIKGRGGKANLGKEDHKFASFEGRRTTTVEGAQRRLKRKQ 987
            K ARTIF+GN+        I++     G +ESVRLRSV V G KVDK G Q LV++VC N+  +  + +++ NAY+VF D TSV+ AL  NG+E   K IRVDR   S  D  RSVF+GN+   A +++VR  F   L   D    VE VRL+RDKTT +GKGFGY+LL D + AA AL ++G K+  R LRV  CGKR K   G+  +         FEGRR     GAQ RL++K+
Sbjct:  148 KDARTIFIGNVSLEATIADIKKHFLACGKIESVRLRSVPVAGCKVDKNGKQNLVKKVCANK-KIFVDGRDSCNAYLVFVDHTSVDAALALNGSEFCSKVIRVDRKTVS-MDAKRSVFVGNVAFTATDDDVRKHFEKALRDGDDTPVVESVRLIRDKTTHLGKGFGYVLLRDVSTAAKALALNGQKMGKRELRVTVCGKRFKNTQGEKKVD------GKFEGRRARP--GAQMRLQKKR 375
[Close]
BLAST of mRNA_H-elongata_contig16338.4014.1 vs. uniprot
Match: A0A1V9ZDC4_9STRA (RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZDC4_9STRA)

HSP 1 Score: 170 bits (430), Expect = 5.430e-45
Identity = 105/241 (43.57%), Postives = 141/241 (58.51%), Query Frame = 1 
Query:  280 KTARTIFVGNLPTTFNTKKIRRLCKDYGTVESVRLRSVAVEGVKVDKAGDQQLVRRVCVNRGMVDEEVKNNVNAYVVFKDATSVEKALEANGAEIEGKHIRVDRARASDHDHTRSVFLGNLPLDANEEEVRALFAAKLEGADK-----AVEGVRLVRDKTTLVGKGFGYLLLVDRAHAAAALGVHGTKLRGRSLRVMPCGKRIKGRGGKANLGKEDHKFASFEGRRTTTVEGAQRRLKRKQ 987
            K  RTIFVGN+      +++++     G VES RLRS+ V G  VD+ G Q LV++VC N+ +  E  ++N NAYVVF    S+EKAL  NGAE   K +RVDR +    D  R+VF+GN+   A E+++R  F A +E  D+      VE VRL+RDK T +GKGFGY+LL D   A  AL ++G+K+  R LRV  CGKR K           D    +FEGRR     GAQ R+ +K+
Sbjct:  123 KAPRTIFVGNVSLEATAEELKKFFSSCGKVESARLRSLPVAGCAVDQHGKQNLVKKVCANKKLFVEG-RDNCNAYVVFASEESIEKALALNGAEFHEKKLRVDR-KVPTIDAKRTVFVGNVAFTATEDDLRRHFEANIEKDDEDEGSALVESVRLIRDKDTHLGKGFGYVLLKDVPTATKALKLNGSKIGKRELRVSVCGKRFKSTAA-------DKTPRTFEGRRAKPAPGAQMRVVKKR 354
[Close]
BLAST of mRNA_H-elongata_contig16338.4014.1 vs. uniprot
Match: A0A6G0X8S4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8S4_9STRA)

HSP 1 Score: 169 bits (429), Expect = 7.580e-45
Identity = 107/241 (44.40%), Postives = 148/241 (61.41%), Query Frame = 1 
Query:  280 KTARTIFVGNLPTTFNTKKIRRLCKDYGTVESVRLRSVAVEGVKVDKAGDQQLVRRVCVNRGMVDEEVKNNVNAYVVFKDATSVEKALEANGAEIEGKHIRVDRARASDHDHTRSVFLGNLPLDANEEEVRALF--AAKLEGADKAVEGVRLVRDKTTLVGKGFGYLLLVDRAHAAAALGVHGTKLRGRSLRVMPCGKRIKGRGGKANLGKEDHKFASFEGRRTTTVEGAQRRL-KRKQGD 993
            K  RTIF+GN+     T  +++     G +ESVRLRS+ V G KVD+AG Q LV++VC N+  +  E +++ NAY+VF D +S++ AL+ NG+    K +RVDR +    D  RSVF+GNL   A ++EVR  F  A + +  +  VE VR++RDKTT  GKGFGY+L  D + AA AL ++G+K+  R +RV  CGKR K      N   E    A FEGRR     GAQ RL K+++GD
Sbjct:  131 KDTRTIFIGNVSLEATTADVKKHFASCGKIESVRLRSLPVAGCKVDQAGKQSLVKKVCANK-KIFVEGRDSCNAYLVFVDESSIQAALKLNGSTFFNKTLRVDR-KVVTMDARRSVFVGNLSFTATDDEVREHFDKALRDDADEMVVESVRIIRDKTTHKGKGFGYVLFKDVSTAAKALSLNGSKMGKREIRVTVCGKRFK------NTHGEKKAEAKFEGRRARP--GAQLRLLKKRKGD 361
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16338.4014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV0_ECTSI2.930e-11075.42White-brown-complex ABC transporter family (Partia... [more]
A0A6H5KDC0_9PHAE1.350e-9974.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9UAS7_9STRA1.400e-5747.13Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7U9S2_9STRA5.600e-5351.01Rna binding protein n=1 Tax=Nannochloropsis gadita... [more]
A0A835YND0_9STRA1.210e-5050.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2KIR5_9STRA3.850e-4845.42Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
B7G077_PHATC1.630e-4644.35Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A485LPI4_9STRA1.680e-4546.64Aste57867_24108 protein n=1 Tax=Aphanomyces stella... [more]
A0A1V9ZDC4_9STRA5.430e-4543.57RNA-binding protein n=1 Tax=Achlya hypogyna TaxID=... [more]
A0A6G0X8S4_9STRA7.580e-4544.40Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16338contigH-elongata_contig16338:340..6551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score351.7
Seed ortholog evalue4.4e-94
Seed eggNOG ortholog2880.D8LFV0
Preferred namemyef2
KEGG koko:K05679,ko:K05681
KEGG TC3.A.1.204
KEGG Pathwayko01523,ko02010,ko04976,map01523,map02010,map04976
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0097159,GO:1901363
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0061@2759,KOG0118@1,KOG0118@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA recognition motif domain
Ec32 orthologEc-05_005440.1
Exons8
Model size1140
Cds size1140
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16338.4014.1prot_H-elongata_contig16338.4014.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16338 340..6551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929956.3358502-CDS-H-elongata_contig16338:339..4761622929956.3358502-CDS-H-elongata_contig16338:339..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 340..476 -
1691679222.7566874-CDS-H-elongata_contig16338:339..4761691679222.7566874-CDS-H-elongata_contig16338:339..476Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 340..476 -
1622929956.3551857-CDS-H-elongata_contig16338:749..8431622929956.3551857-CDS-H-elongata_contig16338:749..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 750..843 -
1691679222.7713783-CDS-H-elongata_contig16338:749..8431691679222.7713783-CDS-H-elongata_contig16338:749..843Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 750..843 -
1622929956.379263-CDS-H-elongata_contig16338:1050..11551622929956.379263-CDS-H-elongata_contig16338:1050..1155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 1051..1155 -
1691679222.7810616-CDS-H-elongata_contig16338:1050..11551691679222.7810616-CDS-H-elongata_contig16338:1050..1155Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 1051..1155 -
1622929956.395357-CDS-H-elongata_contig16338:2414..25521622929956.395357-CDS-H-elongata_contig16338:2414..2552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 2415..2552 -
1691679222.7930245-CDS-H-elongata_contig16338:2414..25521691679222.7930245-CDS-H-elongata_contig16338:2414..2552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 2415..2552 -
1622929956.4288201-CDS-H-elongata_contig16338:3619..37481622929956.4288201-CDS-H-elongata_contig16338:3619..3748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 3620..3748 -
1691679222.8040276-CDS-H-elongata_contig16338:3619..37481691679222.8040276-CDS-H-elongata_contig16338:3619..3748Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 3620..3748 -
1622929956.444091-CDS-H-elongata_contig16338:4388..44931622929956.444091-CDS-H-elongata_contig16338:4388..4493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 4389..4493 -
1691679222.813437-CDS-H-elongata_contig16338:4388..44931691679222.813437-CDS-H-elongata_contig16338:4388..4493Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 4389..4493 -
1622929956.4663367-CDS-H-elongata_contig16338:5123..53851622929956.4663367-CDS-H-elongata_contig16338:5123..5385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 5124..5385 -
1691679222.8218796-CDS-H-elongata_contig16338:5123..53851691679222.8218796-CDS-H-elongata_contig16338:5123..5385Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 5124..5385 -
1622929956.4809947-CDS-H-elongata_contig16338:6381..65511622929956.4809947-CDS-H-elongata_contig16338:6381..6551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 6382..6551 -
1691679222.8316011-CDS-H-elongata_contig16338:6381..65511691679222.8316011-CDS-H-elongata_contig16338:6381..6551Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16338 6382..6551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16338.4014.1

>prot_H-elongata_contig16338.4014.1 ID=prot_H-elongata_contig16338.4014.1|Name=mRNA_H-elongata_contig16338.4014.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=380bp
MAAARGEGERAEAVEGVGTESEEKEKRKDSDSEPESDVAGGGGYSSSDEE
NDGHVCVAKGDDREHKNKEGAREGGVGGLGGQEDHDGDEDHDGKTARTIF
VGNLPTTFNTKKIRRLCKDYGTVESVRLRSVAVEGVKVDKAGDQQLVRRV
CVNRGMVDEEVKNNVNAYVVFKDATSVEKALEANGAEIEGKHIRVDRARA
SDHDHTRSVFLGNLPLDANEEEVRALFAAKLEGADKAVEGVRLVRDKTTL
VGKGFGYLLLVDRAHAAAALGVHGTKLRGRSLRVMPCGKRIKGRGGKANL
GKEDHKFASFEGRRTTTVEGAQRRLKRKQGDNGSGGGRGGRTSGRGGRGR
GEGRGGGGYRGRGGGRGGGRGRGRGRGSG*
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mRNA from alignment at H-elongata_contig16338:340..6551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16338.4014.1 ID=mRNA_H-elongata_contig16338.4014.1|Name=mRNA_H-elongata_contig16338.4014.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6212bp|location=Sequence derived from alignment at H-elongata_contig16338:340..6551- (Himanthalia elongata Himel1 dioecious)
ATGGCCGCGGCTCGTGGTGAAGGCGAAAGGGCCGAGGCCGTCGAGGGAGT
AGGCACGGAGAGCGAGGAAAAGGAGAAGCGCAAAGACTCCGACAGCGAGC
CTGAGAGTGATGTTGCCGGAGGAGGCGGATACAGCAGCTCGGATGAGGAG
AACGACGGACATGTGTGTGTGTGTGTGTGTATTCATTAAATTACACATAA
CCGCGCAATCCGGCCCTGTCGTCCTAGTACTTCTATGCCACTCGTATTGG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTTATT
AAATTGCACATGAAGTGTATTTATTAAATTGCACACAACGTGTAATTATT
AAACTGCACATAACGTGTATATAAATGCGCAATCCGGCCCTGTCATGCTA
GCCCTTTTATCCTAGGCTAGCACGTATTGATTCTTCTGTGTGTACGCATG
TGTGTAAGTATGTATGTACATACGTGTGTACGTATGTTCGAGGGAGATAA
TTCAAGAGAGGGAGAGATTTGTCCGCGTCAATACGTGTATGGCACACTCG
ATGCGGGCCTCACCTCTACACGAGGATTCTGCATCGTAACCTTTGGAGGG
CTGATGCATGACTACCTAGGAAAAACTCGCGCGGGTGCGCCAAAAGGACA
GGGTTGGAGGGTTGGAAAGACGCGGTAGACGTTGACGCCATTTCGCAAGG
AAGCCCTCCTCTCCCTCTCTTCCTCCCTCGTTCCAATTTTGCTTTCCGTT
CCTGCGTTGCGCTCCGTTCTTCTTTTCTTTTATTCTTGGGCGAACGGTTA
TATCCTGCGAGGGCTCAACAACGTTTGTGTGCTGTTTTTTCTTTTCTTGC
GCGCGTGTTTCACAGCGGCGTTGGTTTGGTTTGGTCCATTACTCGCGCGC
CGGATGACCACAGGGGTGCTGTCCTAGCTTGGTGTGTTGCGCGCATTGCT
CTGACGTGTCTCTTTCCCTTGCGGCTCCGTCGAAACGATCGATCTGCTCT
GCTCTGATCTGCTCGCGCCGCGCCGCGCGTTTACAACCAAATCTGTGGGT
TTTAAGTAGGTTGGAGGCATCGCCGCGACGAAGGTCTCAGATGCGTTGGC
GCAGCCAAAGCGAGTCGACCACCTTGGCGACGGCGTCCAAATAGCGCCGC
CGGCAATGGGGAGGAGAGCCAAGGGAGATGACAGAGAACATAAAAACAAA
GAAGGTGCAAGAGAAGGAGGCGTAGGCGGTTTGGGGGGACAGGAAGACCA
CGACGGCGACGAAGACCACGACGGCAAGACGGCGCGGACGATCTTCGTGG
GTAACCTGCCTACAACCTTCAACACGAAGAAAATCCGAAGGCTTTGCAAA
GACTACGGCACGGTGGAGTCGGTCAGGCTGCGCTCGGTCGCCGTCGAGGG
GGTCAAAGTAGACAAGGCGGGAGACCAGGTGCCTGCTTTTGTTGTTGTTG
TTGTTTTTGTTGTTTTTGTTGTTGTTGTCACTTTATGCCGATTGGGCTGA
TCTCTAGGTATGCGAAGGAAATAAACCTTGGAACATGGTCAAATGGCGAG
AAATCTTAAACTCGCGTATGACGGTCATCACGATCACGACACGTGAAAGG
ATAATACGATTTTACCGTTAACCCAGGGCTTTCTCGGGAAACCTTGCGTA
CCGCTGTAAGACGCCTTTTCCTTCAAGAACCACTAAGTCTGTTCGTAGGG
CGCGATGATTAGTGGTTCCCAGGAACTTAATCGAAGCGGTTTAGGAACGG
GTGAAATTGGCGGTTTCGCTAGGCTCCAGCCACACCTCTCAACAAACAAG
GCAAAACAAAGGCATTGACCCGCGTGTCTCCAGAATGTTTTGGTTCGCCG
CCGCGGTGCCTCCGATGTCGTGAAGTTCTACCCGTGGCTCATATTTCTGG
GGGAGGAGGGGGGGGGGGAGAGGGAGCTTTTCCTCTTCTCTCTTCTTCTC
CTGTCTGTTATCGCTACCATACGCGTTTTCCCCGTTGTCATATCGCTTAC
GGCTGCATGTTAAAGTTGTGTGCACGTGATTGGTGAAAACGTGCGCGCCT
TGTTGCAGCAACTGGTGAGGAGAGTGTGCGTGAACCGAGGGATGGTCGAC
GAGGAGGTAAAGAACAACGTCAACGCCTACGTGGTGTTCAAGGACGCCAC
CAGCGTGGAAAAGGTGTGTTTGTGTGTGATTTTTTTCGCCCAAGGCGGGA
ATGGGGAATGAGGGAGGGAGGGCTACGTTTTGAAAGCTTTCCTTTATCAA
CGATTCCGGTGATGTAGGGGATCACGGCGCGAGTAGCGGATGGGGCGGGG
GTGTGGGGGAAGGGGGGTGCCGCTTCGCCGTATGACATGGTTAGCTGTGG
CGTTCGTAAAGATATTTCATGCAACGCGTAAAGGAGCGCAAGTGGGCGTA
ATTCGTCAGCCCGCCGCAGACAGGCCTTAATCTTGGTTTGAGCTGCAGCT
CGTGTATCCGGCCCGTCAGCTTGGCCAGAACGAGAGCAAGGTAGAAAAAC
GTTGCACATTCTATACGCAATACACGTTTGGAGCAACATCCTTGGAGCAA
CATCCGTGGGGAGACGGGAGTGGAAGAGTGGGGGCGGGGGCTTGCAGGTG
TGATAAGAGGAATGCGTTCCATCGAACCCTCCATCTCGATATCTATCTAT
CTATCTAATATTTGCTCTCGCTTTTGCCCACGCCATGTCCGACTAGCCAC
TCGAATGACGTCATCATGCCTGTTATGTTCGGCGTGCATTCGCGGTTTCT
CTCGTAATGACCCCCCCCTCCTACCCCCACGCGCGCGCAAAAAAATGGGT
AAGGCTCTTGAGGCAAACGGCGCGGAGATTGAAGGCAAGCACATCCGCGT
CGACCGGGCCAGGGCTAGCGACCACGACCACACGCGCTCCGTGTTTCTCG
GCAATCTTCCCCTGGACGCCAACGAGGAAGAGGTACCATGTGCTAATATG
CTTTACCCTTCCTAGCCATCACAGTCCACTCGCTAGGCTCTGGTTTGGCG
TCCCTGTTTGATGAATAATGTAATTGTACAAGACAGTGACGGGATCCCCG
ACATTAACCGTCGACCCGATGAATTTACCATCGGGGAACACGATTAATCA
CATATGACGATTTTTTGCTCAACGGTAGTAACGTACACATTCGAACCTGA
CGATAGTTGGACCCTTGGGCTGCACTTCTCACGGTGCTAAGAATGCGTGG
ATTTTCGGAGGGTTGGAATGAGTTCGTATATTTTAAAATCAAAGTATCAA
TAATAATGTTAATAATATCAATAATAATAATAATAATAATAGTGATGTAA
TAATAAAACTAATAATAGTAATAATAATAATAATACTAGTCATAATAATA
GTGATAGTAAGAATAATAGTAATAGAAATAGTAATATAATATAGTAATAA
TAAACTAGAATGAATAAGCTGCAGATGTTCGGAGGGTTTGAATGAGTAAA
TAGTTTTTTAACAATAAATAACAATAATAGTAATAGTATCATCGATGGGG
AGCTGGGTAGGTACAACTACAGGTGAGATTGTAATGCTTATGAGTGTAGC
GTGACACAGTACGTGGAATGCCCTCCATAGACAGAAATGGAAATGGAACA
AATAAATATAAAACGGGATAGGAATGATATACGACGGTATAAAAACGGTA
TGTGATGTTATATTAACGGCATGTAACGGTATAATTACCGTATATTAACG
GCATGTAACGGTATAATTACCGTATATTAACGGCATGTGACGGTATAATT
ACCGTATATTACGGTATGTAACGGTATAATTACGGTACATTAATGGTATA
ACAACGTTAGGTGTCGGGATAATAACGGTATGCGAAATGTTTATAACGGT
TTAGGGATGTTATGATAGAGGGTAATAGTGTATGTTACAAGTAACGGTGG
AGCATCCCCGCGCCTGTACCGCCACTTTACAACCTCATGCACGGAACGCA
ACACCACTTCCTGCTCTCCCCGTGGCCTCCGTCTCGCCCGTATTGTAAGG
TGCGAGCCCTGTTCGCCGCGAAGCTCGAAGGCGCCGACAAAGCAGTGGAG
GGGGTGCGGCTCGTGCGGGACAAGACGACGCTTGTCGGCAAGGGCTTCGG
CTACCTCTTGCTGGTCGATCGGGCGCACGCGGCAGCGGTGAGCGAGGCAA
TCCAGCGAGCAGAAATCAGTCGGCCCCCGATCGCGTTACCACGGCGCTAC
GGCACGAAACATCTTGAGACCCCCGCGAATTTTGAACTGGTCCGTTTTAC
CGTCGAAGGCGGCGGCGGAGGCGTGGTGGGACGTCGGGAATCCATTTAAT
TTGTCCCCGGGAATTTCTTTCTGGGTGTTCGGAGGGTCAAGCTTGGTGCG
CGGATGTGGACGCGCAAGGAGATAGTGGTCAAGGAGGGGAGGGGTACTAA
CGTTTTGCATGCCTTAGCTGTTATATCATTGATCTAATGACCACGCGTCC
TCGGGAGGGAGGACCGAGCACTGTTCCCACATGATCGATCACGGAATGGC
CAGTCGAATCGTTCCTTCCTATTTTCTACCAAAGGTGGCCCAAAAATCAG
TTTTCGCCCTTTTAGTCCACTTGTTATCCCGTATTCCCTACGAGCTGGGT
CGGCCATAAAGTCGACAGAATAGTCCACCGCTCATCCGCGGGGAAAGGTT
TATCAACCTTTGGTCGGAAATTTTGACAGTGGGTTTGTAACGCTTTGTCT
TACCCCCCCCCCCCCCTCCCAAAGGAATCAGTTTTCGTTTTTTTTTTCCC
CTTAACTTTGGCCGTTTGAAATTTTGGGGCGTGATTGAATTGCCTGAAGA
TGGGGCAAAATAAAATAATTCCTTTGGGGTGGGGGGCGATGCGTTGAAAA
TCCTGTGTCAAAATTTCAGACCAAACATCGAAAAACTCGGCCACGCATCG
TGATATTTGCACCAAGATTGCTTTACACTCAAACTTACATACAATAAAGG
AATATGGCTATAACTTTCGAACAGCAGTAAACTACGTACGATATATATAG
GACGCACACCGTTCTTCTTCTCGCCTTTTTACTGACTTACACACACCAAA
TTTCAGTGAAATCGGTGGATTTCAATTTTGTGTGGAAATTTCCAAAAATT
CAGATTGAGCCACATAAAAAACCCGATGCGAAAAAATCTCAAATACTAAA
ACGCGGCTTTCACGGCACGAACGTGGCGGATTTCTAAGTAAGCTGAAAGG
ATGCGCGTGAGCGCCTTGACTATCCGATCACGACGATATGGTCAGCTTGC
CCTGATTCGTTGCCGTCCAAAATATATGATCAGTGGATATTTTATGTGTT
TCTTGGTCGGCCCAGCTTGTACCCCATATCCCCAAATATAGCCACCGTTG
TCCGACGGGTTTCGCGTCAATCCGGCTTGTCGTCGTTGCTGACCAGGCGC
TCGGTGTCCACGGGACAAAGCTACGTGGTCGATCCCTCCGGGTCATGCCC
TGCGGAAAAAGGATCAAGGGCAGGGGCGGAAAGGCCAATCTTGGAAAAGA
GGTGTGTGGGGAGGTGGACACCGTCACACGCCTCGTCTTTTCTGCGCGCG
CGCGGGATTGCGCCACCCGGTGCTGTGTTTTTTTTGTGATCCATCCACTA
CGGGTGCAGTTGATACCGCCTCAGAAATTGTGTGAACTCCGAAATCTTTG
CCTAAATGGCATGTAACTCTTGCCTGGCCATCTCCCCCCCCCCCGTCTTC
GTCAATAGGACCACAAGTTTGCGAGTTTCGAGGGAAGGCGGACGACTACC
GTGGAAGGTGCGCAGCGTCGCCTGAAGCGCAAGCAGGGCGATAATGGAAG
CGGTACTGGGCGGCCCGGCGCTCTCGAGAACCCGCGACAGCCTCAACCGC
GAGCCCCGACGACGGCAAGCAGGACTGCTACTGGGCGGAGGGGGCCGACT
GCCGCTGTTGCTCCCACGCTCAATGGCAAGAAACCGCGATGGACAAACGC
CGAAGGAATTAGGGTGGGCAAGGTAGATGGCGGTCGGCCAGTCGGGGAGC
GCAGCCCCGGGGCGGGCGCTAGCGGAAAGGGTCACCACGATAGGAGAGGA
AGAGCTGAGGTGCCGCGGGGGAGAGGGGGTGGGAGAGGAGGCAGGACGAG
TGGGAGGGGCGGTCGCGGGAGGGGTGAAGGTAGAGGTGGAGGTGGATATA
GGGGTAGAGGTGGTGGTAGAGGTGGAGGCAGAGGTAGAGGTAGAGGCAGA
GGAAGCGGCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig16338:340..6551-

>mRNA_H-elongata_contig16338.4014.1 ID=mRNA_H-elongata_contig16338.4014.1|Name=mRNA_H-elongata_contig16338.4014.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2280bp|location=Sequence derived from alignment at H-elongata_contig16338:340..6551- (Himanthalia elongata Himel1 dioecious)
ATGGCCGCGGCTCGTGGTGAAGGCGAAAGGGCCGAGGCCGTCGAGGGAGT
AGGCACGGAGAGCGAGGAAAAGGAGAAGCGCAAAGACTCCGACAGCGAGC
CTGAGAGTGATGTTGCCGGAGGAGGCGGATACAGCAGCTCGGATGAGGAG
AACGACGGACATGTGTGTGTATGGCCGCGGCTCGTGGTGAAGGCGAAAGG
GCCGAGGCCGTCGAGGGAGTAGGCACGGAGAGCGAGGAAAAGGAGAAGCG
CAAAGACTCCGACAGCGAGCCTGAGAGTGATGTTGCCGGAGGAGGCGGAT
ACAGCAGCTCGGATGAGGAGAACGACGGACATGTGTGTGTAGCCAAGGGA
GATGACAGAGAACATAAAAACAAAGAAGGTGCAAGAGAAGGAGGCGTAGG
CGGTTTGGGGGGACAGGAAGACCACGACGGCGACGAAGACCACGACGGCA
AGACGGCGCGGACGATCTTCGTGGGTAACCTGCCTACAACCTTCAACACG
AAGAAAATCCGAAGGCTTTGCAAAGACTACGGCACGGTGGAGTCGGTCAG
GCTGCGCTCGGTCGCCGTCGAGGGGGTCAAAGTAGACAAGGCGGGAGACC
AGAGCCAAGGGAGATGACAGAGAACATAAAAACAAAGAAGGTGCAAGAGA
AGGAGGCGTAGGCGGTTTGGGGGGACAGGAAGACCACGACGGCGACGAAG
ACCACGACGGCAAGACGGCGCGGACGATCTTCGTGGGTAACCTGCCTACA
ACCTTCAACACGAAGAAAATCCGAAGGCTTTGCAAAGACTACGGCACGGT
GGAGTCGGTCAGGCTGCGCTCGGTCGCCGTCGAGGGGGTCAAAGTAGACA
AGGCGGGAGACCAGCAACTGGTGAGGAGAGTGTGCGTGAACCGAGGGATG
GTCGACGAGGAGGTAAAGAACAACGTCAACGCCTACGTGGTGTTCAAGGA
CGCCACCAGCGTGGAAAAGCAACTGGTGAGGAGAGTGTGCGTGAACCGAG
GGATGGTCGACGAGGAGGTAAAGAACAACGTCAACGCCTACGTGGTGTTC
AAGGACGCCACCAGCGTGGAAAAGGCTCTTGAGGCAAACGGCGCGGAGAT
TGAAGGCAAGCACATCCGCGTCGACCGGGCCAGGGCTAGCGACCACGACC
ACACGCGCTCCGTGTTTCTCGGCAATCTTCCCCTGGACGCCAACGAGGAA
GAGGCTCTTGAGGCAAACGGCGCGGAGATTGAAGGCAAGCACATCCGCGT
CGACCGGGCCAGGGCTAGCGACCACGACCACACGCGCTCCGTGTTTCTCG
GCAATCTTCCCCTGGACGCCAACGAGGAAGAGGTGCGAGCCCTGTTCGCC
GCGAAGCTCGAAGGCGCCGACAAAGCAGTGGAGGGGGTGCGGCTCGTGCG
GGACAAGACGACGCTTGTCGGCAAGGGCTTCGGCTACCTCTTGCTGGTCG
ATCGGGCGCACGCGGCAGCGGTGCGAGCCCTGTTCGCCGCGAAGCTCGAA
GGCGCCGACAAAGCAGTGGAGGGGGTGCGGCTCGTGCGGGACAAGACGAC
GCTTGTCGGCAAGGGCTTCGGCTACCTCTTGCTGGTCGATCGGGCGCACG
CGGCAGCGGCGCTCGGTGTCCACGGGACAAAGCTACGTGGTCGATCCCTC
CGGGTCATGCCCTGCGGAAAAAGGATCAAGGGCAGGGGCGGAAAGGCCAA
TCTTGGAAAAGAGGCGCTCGGTGTCCACGGGACAAAGCTACGTGGTCGAT
CCCTCCGGGTCATGCCCTGCGGAAAAAGGATCAAGGGCAGGGGCGGAAAG
GCCAATCTTGGAAAAGAGGACCACAAGTTTGCGAGTTTCGAGGGAAGGCG
GACGACTACCGTGGAAGGTGCGCAGCGTCGCCTGAAGCGCAAGCAGGGCG
ATAATGGAAGCGGACCACAAGTTTGCGAGTTTCGAGGGAAGGCGGACGAC
TACCGTGGAAGGTGCGCAGCGTCGCCTGAAGCGCAAGCAGGGCGATAATG
GAAGCGGGGGTGGGAGAGGAGGCAGGACGAGTGGGAGGGGCGGTCGCGGG
AGGGGTGAAGGTAGAGGTGGAGGTGGATATAGGGGTAGAGGTGGTGGTAG
AGGTGGAGGCAGAGGTAGAGGTAGAGGCAGAGGAAGCGGCTGAGGGGTGG
GAGAGGAGGCAGGACGAGTGGGAGGGGCGGTCGCGGGAGGGGTGAAGGTA
GAGGTGGAGGTGGATATAGGGGTAGAGGTGGTGGTAGAGGTGGAGGCAGA
GGTAGAGGTAGAGGCAGAGGAAGCGGCTGA
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