mRNA_H-elongata_contig16321.4008.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16321.4008.1
Unique NamemRNA_H-elongata_contig16321.4008.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig16321.4008.1 vs. uniprot
Match: A0A6H5K1Q1_9PHAE (PKS_ER domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q1_9PHAE)

HSP 1 Score: 359 bits (921), Expect = 2.990e-115
Identity = 171/261 (65.52%), Postives = 211/261 (80.84%), Query Frame = 3 
Query:    3 VGDRIIASNGMLPVGGLAEYIAVQTKWAAKAPENIDAVQASALPNSPCAAMHAVRTARIRPGERVLVLGGSGGVGTSLLQLAKDAGASFLATTSTAEALCFSLGADCVINYRNTNWFENESFKEAPFDVVIDCIGWRDEWKESVKHGVLKPGLKGGRYVAVAFTDSPEMRSVWQGIQMFVPQLLRLSWTGINRFRPTYKLVVSDPTAKDLEELAGLVRTKRLRPVLEARSPFPFTAEGVKDAYRLQMSKHAHGKVVVKVSS 785
            VGDR++A+NGM P GGLAEY  VQT  AAKAP N+  VQA+ LPNSP A +HA + A+++ G+RV+VLGGSGGVG++LLQL KDA ASFLATTSTAEALC SLGAD V+NYR TNW+E+E +K  PFDVVIDC+GWRDEWKE+ + GVLK G  GGRY++VA TD P++ SVWQ  +MFVPQL R  WT INR RP YKLV+S+PTA+D+ ++  LV T R +PVL+  SPFPFTA+GVK A++LQ SKHAHGKVVV +++
Sbjct:   89 VGDRVVATNGMTPTGGLAEYAVVQTNNAAKAPANVTPVQAAVLPNSPIAGLHAAKAAKLKEGDRVMVLGGSGGVGSALLQLVKDAKASFLATTSTAEALCLSLGADVVVNYRETNWYEDERYKAEPFDVVIDCVGWRDEWKEAYRRGVLKSGWNGGRYISVASTDDPQIHSVWQVTKMFVPQLWRSGWTLINRLRPRYKLVISEPTAQDIADMVELVTTGRFKPVLDPASPFPFTADGVKAAFKLQGSKHAHGKVVVTIAA 349
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BLAST of mRNA_H-elongata_contig16321.4008.1 vs. uniprot
Match: D7G0C3_ECTSI (PKS_ER domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C3_ECTSI)

HSP 1 Score: 227 bits (579), Expect = 6.010e-66
Identity = 110/156 (70.51%), Postives = 128/156 (82.05%), Query Frame = 3 
Query:    3 VGDRIIASNGMLPVGGLAEYIAVQTKWAAKAPENIDAVQASALPNSPCAAMHAVRTARIRPGERVLVLGGSGGVGTSLLQLAKDAGASFLATTSTAEALCFSLGADCVINYRNTNWFENESFKEAPFDVVIDCIGWRDEWKESVKHGVLKPGLKGG 470
            VGDRI+A+NGM P GGLAEY  VQT  AAKAP NI  VQAS LPNSP A +HA + A+++ G+RV+VLGGSGGVG++LLQL KDA ASFLATTSTAEALC SLGAD V+NYR TNW+E+E +K  PFDVVIDC+GWRDEWKE+ + GVLK G  GG
Sbjct:   92 VGDRIVATNGMTPTGGLAEYAVVQTNNAAKAPANITPVQASVLPNSPIAGLHAAKAAKLKEGDRVMVLGGSGGVGSALLQLVKDAKASFLATTSTAEALCLSLGADVVVNYRETNWYEDERYKAEPFDVVIDCVGWRDEWKEAYRRGVLKSGWNGG 247
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BLAST of mRNA_H-elongata_contig16321.4008.1 vs. uniprot
Match: A0A6A7G8R5_9CRUS (2-methylene-furan-3-one reductase (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G8R5_9CRUS)

HSP 1 Score: 204 bits (520), Expect = 2.990e-56
Identity = 113/264 (42.80%), Postives = 159/264 (60.23%), Query Frame = 3 
Query:    3 VGDRIIAS-NGMLPVGGLAEYIAVQTKWAAKAPENIDAVQASALPNSPCAAMHAVRTARIRPGERVLVLGGSGGVGTSLLQLAKDAGASFLATTSTAEALCFSLGADCVINYRNTNWFENESFKEAPFDVVIDCIGWRDEWKESVKHGVLKPGLKGGRYVAVAFTD-SPEMRSVWQGIQMFVPQLLRLSWTGI-NRFRPTYKLVVSDPTAKDLEELAGLVRTKRLRPVLEARSPFPFTAEGVKDAYRLQMSKHAHGKVVVKVSS 785
            VGD ++AS +    +GG+AEY  V+T  AA  P++I  +  SAL NS   A+   + A ++ G+RVLVLGGSGG+ T+L+QL K AGASF+A+TST + L  S G D VI+Y   NW+E   FK  PFDV++DC   +  W+ + K+G+LK G  GGR++AV + +   EM S         P L R  WT + + F P YK+ V     + L  +  +V   R   VL+  SPFPFTA+GVK A+ L  ++  HGK+VV + S
Sbjct:   79 VGDNVVASWSDSFGIGGMAEYALVKTSNAALRPDSIGIIDGSALANSAAHALSTFQNAAVKEGDRVLVLGGSGGLATTLVQLIKKAGASFIASTSTDKVLLESFGVDLVIDYHEQNWWEVPEFKGKPFDVIVDCADGKSAWRRAKKNGMLKTGWNGGRFIAVVWNEWHIEMHSYCSMFPFLCPALWRSIWTRLCSPFAPKYKIQVGSVNGEALANVLKMVDEGRFVAVLDPASPFPFTADGVKAAFHLLANRGGHGKIVVNIDS 342
[Close]
BLAST of mRNA_H-elongata_contig16321.4008.1 vs. uniprot
Match: A0A7S2GWZ4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GWZ4_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.420e-55
Identity = 114/263 (43.35%), Postives = 169/263 (64.26%), Query Frame = 3 
Query:    3 VGDRIIASNGMLPVGGLAEYIAVQTKWAAKAPENIDAVQASALPNSPCAAMHAVRTARIRPGERVLVLGGSGGVGTSLLQLAKDAGASFLATTSTAEALCFSLGADCVINYRNTNWFENESFKEAPFDVVIDCIGWRDEWKESVKHGVLKPGLKGGRYVAVAFTD-SPEMRSVWQGIQMFVPQLLRLSWTGINRFR-PTYKLVVSDPTAKDLEELAGLVRTKRLRPVLEARSPFPFTAEGVKDAYRLQMSKHAHGKVVVKVSS 785
            VGD + A+NG +PVGG+AEY+ V    A   P ++D +QA+A  +S   ++H+V+   ++ G+RVLVLGGSGGVG+S ++LAK+AGASF+ATTST  A+C SLGAD VINY   NW+E ++F+  PFD+VID +G  + + ++V   VLK   +GG ++AV   D  P++ + ++ I+  +    R  WT I R + P +  ++       L ++  L+    L  +L+  SP PFT EGVK A++ Q   HAHGKVVVK+ S
Sbjct:  110 VGDIVAANNGFMPVGGMAEYMLVDASLAVFKPPSVDIIQAAAC-SSAVTSLHSVKN--VKKGDRVLVLGGSGGVGSSAIRLAKNAGASFIATTSTQHAMCSSLGADEVINYNEENWWERDTFRNNPFDIVIDTVGGGNFYGKAVH--VLKSNKRGGHFIAVTGDDPKPDLTTWFKAIRFLIKIPGRPLWTRIRRAKYPRFTTLMPYDETNGLAQVLALIEKGDLEIILDESSPLPFTEEGVKTAFKTQGYGHAHGKVVVKMES 367
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BLAST of mRNA_H-elongata_contig16321.4008.1 vs. uniprot
Match: K3WX96_GLOUD (PKS_ER domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WX96_GLOUD)

HSP 1 Score: 200 bits (508), Expect = 1.350e-54
Identity = 120/264 (45.45%), Postives = 163/264 (61.74%), Query Frame = 3 
Query:    3 VGDRIIASNGMLPVGGLAEYIAVQTKWAAKAPENIDAVQASALPNSPCAAMHAVRTARIRPGERVLVLGGSGGVGTSLLQLAKDAGASFLATTSTAEALCFSLGADCVINYRNTNWFEN-ESFKEAPFDVVIDCIGWRDEWKESVKHGVLKPGLKGGRYVAVAFTDSPEMRSVWQGIQMFVPQLLRLSWTGINRFRPTYKLVVSDPTAKDLEELAGLVRT--KRLRPVLEARSPFPFTAEGVKDAYRLQMSKHAHGKVVVKVSS 785
            VGDRI+AS      G  A+ + V    AA AP    A++A++LP + C A+ A++ ARI PG RVLV+GGSGGVGT ++QLAK  GA+F+ATTST  AL  SLGAD VI+YR+ NW++  +  +EA  DVVIDC+G    W+   +  V K     GRY+AV  + + E+R++W  +    P L    W  +N F  +YK+V S P  K ++EL  LV    ++LR VL+  SPF FT EGV  A  LQ S  A GK+V +V+S
Sbjct:   87 VGDRIVASLPPFVHGSFADLVLVDANLAAMAPSVCSALEAASLPVAGCTALQAIKDARIGPGSRVLVIGGSGGVGTLVIQLAKLKGAAFVATTSTNAALVKSLGADLVIDYRHANWWDALQQQQEALLDVVIDCVGDAASWQHCDRRVVHK----NGRYIAVVDSPNTEVRTIWDLLAFLGPML----WRSLNPFTTSYKMVSSFPQGKHVQELVDLVTANPEKLRAVLDPASPFAFTLEGVTQAVALQNSHRAKGKLVFEVNS 342
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BLAST of mRNA_H-elongata_contig16321.4008.1 vs. uniprot
Match: A0A061QZS4_9CHLO (Oxidoreductase zinc-binding protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QZS4_9CHLO)

HSP 1 Score: 200 bits (508), Expect = 1.590e-54
Identity = 111/260 (42.69%), Postives = 161/260 (61.92%), Query Frame = 3 
Query:    3 VGDRIIASNGMLPVGGLAEYIAVQTKWAAKAPENIDAVQASALPNSPCAAMHAVRTARIRPGERVLVLGGSGGVGTSLLQLAKDAGASFLATTSTAEALCFSLGADCVINYRNTNWFENESFKEAPFDVVIDCIGWRDEWKESVKHGVLKPGLKGGRYVAVAFTD-SPEMRSVWQGIQMFVPQLLRLSWTGINRFRPTYKLVVSDPTAKDLEELAGLVRTKRLRPVLEARSPFPFTAEGVKDAYRLQMSKHAHGKVVVKV 779
            VGD +I++  M   GGLAE+  V +  + + P+++ A++A+A  N+   A  AV+ A+++ G+RVL+LGGSGG+GT L+QLAK+ GASF+A T+T  AL  SLGAD VINYR TNW+E + F E PFDVV D       W       VLKP  KGGR++A+   +   E+RS  Q +      L R   +  N+ +P Y + +  P    +EE   LV   +L+ V++ RSP PFT EGV++A++L M +  HGK+VV +
Sbjct:   89 VGDNVISTWTMFGQGGLAEFALVDSALSIRKPDSLSALEAAAFANTCPYAYLAVKGAQLKEGDRVLILGGSGGMGTLLIQLAKNFGASFVACTTTDTALGMSLGADRVINYRQTNWWEEKEFIENPFDVVFDAAEGLTAWHNIKSSKVLKPASKGGRFIAIVLNEWHIEIRSFGQLVSFLFRPLWRSFASKFNKKQPRYHVHLDSPDKTSMEESLALVLEGKLKIVVDKRSPHPFTTEGVREAFQLHMDRSGHGKIVVSL 348
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BLAST of mRNA_H-elongata_contig16321.4008.1 vs. uniprot
Match: A0A7S1Z666_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z666_TRICV)

HSP 1 Score: 179 bits (455), Expect = 3.120e-48
Identity = 106/253 (41.90%), Postives = 162/253 (64.03%), Query Frame = 3 
Query:   33 MLPVGGLAEYIAVQTKWAAKAPENIDAVQASALPNSPCAAMHAVRTARIRPGERVLVLGGSGGVGTSLLQLAKDAGASFLATTSTAEALCFSLGADCVINYRNTNWFENESFKEAPFDVVIDCIGWRDEWKESVKHGVLKPGLKGGRYVAVAFTDSPEMRSVWQGIQMFVPQL-LRLSWTGINRFR-PTYKLVVSDPTAKDLEELAGLVRTKRLRPVLEARSPFPFTAEGVKDAYRLQMSKHAHGKVVVKVSS 785
            M+PVGG+AE++ V T  A   P+++D +QA+A  ++   ++ AV       G+RVLVLGGSGGVG+S + LAK  GASF+ATTST E +C  LGAD VINY+  NW+E + F++  FDV+ID +G  + + ++VK  VLK G KGG++VAV   D+    S W  +  ++ ++  R  +T I + + P + L++    AK L  +  L+  ++L+  L+  SP  F+  GVK+A+++Q S HAHGKVVV + +
Sbjct:    1 MMPVGGMAEFMVVDTANAVAKPDSVDFIQAAACASA-VTSLDAVDFCN--EGDRVLVLGGSGGVGSSAITLAKAFGASFVATTSTQEKMCLDLGADEVINYKEKNWWEIDEFRKEKFDVIIDTVGGGNFYGKAVK--VLKTGKKGGKFVAVTGDDNQPDLSSWFKVLQYISKMPWRPLYTSIRKRKYPKFILLLPGDYAKGLTRILNLMSEEKLKIALDPGSPHAFSEAGVKEAFKIQGSGHAHGKVVVTMEN 248
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BLAST of mRNA_H-elongata_contig16321.4008.1 vs. uniprot
Match: A0A7S3XBJ1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3XBJ1_9SPIT)

HSP 1 Score: 181 bits (458), Expect = 1.740e-47
Identity = 103/271 (38.01%), Postives = 158/271 (58.30%), Query Frame = 3 
Query:    3 VGDRIIASNGMLPVGGLAEYIAVQTKWAAKAPENIDAVQASALPNSPCAAMHAVRTARIRPGERVLVLGGSGGVGTSLLQLAKDAGASFLATTSTAEALCFSLGADCVINYRNTNWFENESFKEAPFDVVIDCIGWRDEWKESVKHGVLKPGLKGGRYVAVAFTDSPEMRSVWQGI-QMFVPQLLRL-------SWTGINRFRPTYKLVVSDP-TAKDLEELAGLVRTKRLRPVLEARSPFPFTAEGVKDAYRLQMSKHAHGKVVVKVSSS 788
            VGD ++ S  +   GGLAEY  + +K A K P+ +  + A+A+ NS   A   V  A ++ G+RVLVLGGSGG+GT L+QL + AGAS++ATTST   L  SLG D  +++    W E   +K +PFD++IDC      W+    +G+LKP  +GGR++ V  T+     + W  I   F P L R+       +++G  R  PTY + +  P ++  +     LV   +++PV++ RSP PFT EGV++A+ L  ++  HGK+V+ V+ S
Sbjct:   75 VGDLVVGSWSLFGEGGLAEYYKLDSKMATKKPDGMSVLDAAAMANSLVHAQQTVEQAAVKTGDRVLVLGGSGGMGTLLVQLVRSAGASYVATTSTDVDLMASLGVDKCVDHTKEQWSELAEWKASPFDLIIDCAEGVGAWRACCANGLLKPASEGGRWLCVVLTEWDIYITKWYHIFTFFAPVLGRMLKNKLGRTFSG-GRSAPTYMMHLGGPESSAAIARALDLVSQGKVKPVVDKRSPHPFTTEGVQEAFELLRNRQGHGKIVIHVAES 344
[Close]
BLAST of mRNA_H-elongata_contig16321.4008.1 vs. uniprot
Match: A0A2V3IJN8_9FLOR (2-methylene-furan-3-one reductase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJN8_9FLOR)

HSP 1 Score: 180 bits (456), Expect = 3.970e-47
Identity = 98/260 (37.69%), Postives = 151/260 (58.08%), Query Frame = 3 
Query:    6 GDRIIASNGMLPVGGLAEYIAVQTKWAAKAPENIDAVQASALPNSPCAAMHAVRTARIRPGERVLVLGGSGGVGTSLLQLAKDAGASFLATTSTAEALCFSLGADCVINYRNTNWFENESFKEAPFDVVIDCIGWRDEWKESVKHGVLKPGLKGGRYVAVAFTD-SPEMRSVWQGIQMFVPQLLR-LSWTGINRFRPTYKLVVSDPTAKDLEELAGLVRTKRLRPVLEARSPFPFTAEGVKDAYRLQMSKHAHGKVVVKV 779
            GD +I +     +G LAE   V  K+    P  +  ++A+A+ +S   A+ AV  AR++ G+RVLVLGGSGGVGTSLLQL + A  S + TTST + LC  LGAD VINY+  +W++     E  FDV+IDC      W+++++HG++K   +GGR++AV   +   E+ + WQ +  F+P + R ++   +    PTY ++   P       L  +V    L+ VL+  SP  FT +GV DA+   +++  HGK+VV +
Sbjct:   90 GDHVIGTWDAFGIGALAELAVVHQKFVELKPPKLSFLEAAAVADSAANALLAVEDARVKAGDRVLVLGGSGGVGTSLLQLLRRADVSHIVTTSTDKPLCKQLGADVVINYKEVDWWKAPEVTEQAFDVMIDCAEGSSAWRKALEHGIVKSRKEGGRFLAVVVNEWHIEIHNCWQMLSWFLPVVRRVIASRCLGSVSPTYTMMFPAPRGDSNRRLLDIVEEGGLKVVLDPESPHSFTTKGVHDAFDKMIARKGHGKIVVSI 349
[Close]
BLAST of mRNA_H-elongata_contig16321.4008.1 vs. uniprot
Match: A0A7S1XFV9_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XFV9_9RHOD)

HSP 1 Score: 179 bits (453), Expect = 1.530e-46
Identity = 96/263 (36.50%), Postives = 159/263 (60.46%), Query Frame = 3 
Query:    3 VGDRIIASNGMLPVGGLAEYIAVQTKWAAKAPENIDAVQASALPNSPCAAMHAVRTARIRPGERVLVLGGSGGVGTSLLQLAKDAGASFLATTSTAEALCFSLGADCVINYRNTNWFENESFKEAPFDVVIDCIGWRDEWKESVKHGVLKPGLKGGRYVAVAFTDSPEMRSVWQGIQMFV-PQLLRLSWTGINRFRPTY--KLVVSDPTAKDLEELAGLVRTKRLRPVLEARSPFPFTAEGVKDAYRLQMSKHAHGKVVVKVS 782
            VGD ++ +  +  VGG+A+Y  V+ + +A  P+ +  V+A++L NS   +M  V  A++  G RV++LGGSGG+GT+L+QLA+ AGA+++A TST   L  SLG DC I+Y    W++   F + PFDVV DC      W   +  GVLK G  GG++ A    +   +   W  + +++ P L R+  T I+  +P Y   +++ +P  + ++ L  +V+   L+ VL++RSP PFT EGV++A+ +  +   HGK+VV+++
Sbjct:  104 VGDEVVGTWKLFGVGGMAQYALVKMELSALKPQILSFVEAASLCNSAVYSMVGVEGAQVEKGSRVMILGGSGGLGTALVQLARRAGATYIACTSTQVDLMKSLGVDCAIDYTKEAWWKRPEFAQNPFDVVFDCAEGLSAWNNILASGVLKSGKLGGKHYAYVQKEWRIVMHHWYDMIIYMLPLLGRIIMTRIDTSKPRYVFPIILGEPNGQRIKRLFDIVQEGGLKAVLDSRSPHPFTEEGVREAFTIHENHRGHGKIVVEIA 366
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16321.4008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1Q1_9PHAE2.990e-11565.52PKS_ER domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G0C3_ECTSI6.010e-6670.51PKS_ER domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6A7G8R5_9CRUS2.990e-5642.802-methylene-furan-3-one reductase (Fragment) n=1 T... [more]
A0A7S2GWZ4_9STRA1.420e-5543.35Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K3WX96_GLOUD1.350e-5445.45PKS_ER domain-containing protein n=1 Tax=Globispor... [more]
A0A061QZS4_9CHLO1.590e-5442.69Oxidoreductase zinc-binding protein n=1 Tax=Tetras... [more]
A0A7S1Z666_TRICV3.120e-4841.90Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3XBJ1_9SPIT1.740e-4738.01Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A2V3IJN8_9FLOR3.970e-4737.692-methylene-furan-3-one reductase n=1 Tax=Gracilar... [more]
A0A7S1XFV9_9RHOD1.530e-4636.50Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16321contigH-elongata_contig16321:668..7111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score212.6
Seed ortholog evalue2.1e-52
Seed eggNOG ortholog2880.D7G0C3
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG0604@1,KOG1198@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-02_000990.1
Exons4
Model size2078
Cds size768
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16321.4008.1prot_H-elongata_contig16321.4008.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16321 700..5833 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.2850382-UTR-H-elongata_contig16321:667..6991622929955.2850382-UTR-H-elongata_contig16321:667..699Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16321 668..699 +
1691679222.3694112-UTR-H-elongata_contig16321:667..6991691679222.3694112-UTR-H-elongata_contig16321:667..699Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16321 668..699 +
1622929955.440257-UTR-H-elongata_contig16321:5833..71111622929955.440257-UTR-H-elongata_contig16321:5833..7111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16321 5834..7111 +
1691679222.4257429-UTR-H-elongata_contig16321:5833..71111691679222.4257429-UTR-H-elongata_contig16321:5833..7111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig16321 5834..7111 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.2999477-CDS-H-elongata_contig16321:699..9271622929955.2999477-CDS-H-elongata_contig16321:699..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16321 700..927 +
1691679222.382473-CDS-H-elongata_contig16321:699..9271691679222.382473-CDS-H-elongata_contig16321:699..927Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16321 700..927 +
1622929955.319052-CDS-H-elongata_contig16321:2418..25071622929955.319052-CDS-H-elongata_contig16321:2418..2507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16321 2419..2507 +
1691679222.3913257-CDS-H-elongata_contig16321:2418..25071691679222.3913257-CDS-H-elongata_contig16321:2418..2507Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16321 2419..2507 +
1622929955.3366-CDS-H-elongata_contig16321:4385..45601622929955.3366-CDS-H-elongata_contig16321:4385..4560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16321 4386..4560 +
1691679222.40039-CDS-H-elongata_contig16321:4385..45601691679222.40039-CDS-H-elongata_contig16321:4385..4560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16321 4386..4560 +
1622929955.3638473-CDS-H-elongata_contig16321:5557..58331622929955.3638473-CDS-H-elongata_contig16321:5557..5833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16321 5558..5833 +
1691679222.4170024-CDS-H-elongata_contig16321:5557..58331691679222.4170024-CDS-H-elongata_contig16321:5557..5833Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16321 5558..5833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16321.4008.1

>prot_H-elongata_contig16321.4008.1 ID=prot_H-elongata_contig16321.4008.1|Name=mRNA_H-elongata_contig16321.4008.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=256bp
MLPVGGLAEYIAVQTKWAAKAPENIDAVQASALPNSPCAAMHAVRTARIR
PGERVLVLGGSGGVGTSLLQLAKDAGASFLATTSTAEALCFSLGADCVIN
YRNTNWFENESFKEAPFDVVIDCIGWRDEWKESVKHGVLKPGLKGGRYVA
VAFTDSPEMRSVWQGIQMFVPQLLRLSWTGINRFRPTYKLVVSDPTAKDL
EELAGLVRTKRLRPVLEARSPFPFTAEGVKDAYRLQMSKHAHGKVVVKVS
SSSVG*
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mRNA from alignment at H-elongata_contig16321:668..7111+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16321.4008.1 ID=mRNA_H-elongata_contig16321.4008.1|Name=mRNA_H-elongata_contig16321.4008.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6444bp|location=Sequence derived from alignment at H-elongata_contig16321:668..7111+ (Himanthalia elongata Himel1 dioecious)
AGGTGGGCGACAGGATAATAGCTTCCAACGGGATGCTCCCCGTGGGGGGT
CTGGCGGAGTACATCGCGGTACAGACCAAGTGGGCGGCGAAGGCCCCCGA
AAACATCGATGCCGTCCAGGCGTCGGCACTCCCCAATAGTCCCTGCGCGG
CCATGCACGCCGTGAGGACGGCTAGAATCAGGCCAGGGGAGCGGGTGCTC
GTGCTCGGCGGGTCTGGCGGCGTGGGAACGTCGCTCTTGCAGCTCGCCAA
GGATGCCGGGGTGAGGCGACGAGCGCAAATTTTGTCGCGACTTCGGATCC
CTAGGGATAGTGGCTGTAGAGCTGGCGGGGTGTCTTGGTCATCGCCAAGA
TTCGTACCTCTTTGAGACCGCTATATATAGGTATTGATTTGTATTTGGTA
CGTCTACGCCTGACTGAAATGTGCCACCGAACGTTTTTCACTCGCAAGAA
CTATGACACGCTGAACATGTAAATCAATCAACCAAACGACTAATAATGGG
GATGTCATAGCGCGTATACTGTAAAATTGTGTAAGTGGGTTGTATACTAA
AGTTAGTAGTTTCTCGTCTTTATAGAAAGTACCTTATATAAGGTTAGTAT
TAATAGTATACATAGTTCGACCGCGTGCGAAGGTGATTAATTGATTCATT
GATTGTCACATTTACAGCAGACTGGTCTCCTCCACACCGATCTCGCACGT
GGTCTCAGAAGAGGTACATAAGGTCACACACGGACGATCCAACGTTGGGT
ATCCATACATGCTCGAACTATACCAACCAAGAACCAGCCTCAGTCTCAAC
GAAGAATCCCGATAACTAAAACGGTATCTGACTGCAGCTTATAACAACCA
ACATGTCTTCACATGTTCAAGAGCTACACAAAGTACTGTCGGAAGTGCTG
GTAAGACCCACACAGAAGCAACTAAACAATAGTTTGCCGCGGGTTATATC
ATAGTATTATTATTATATTGGTACTATTGATGGTCAAAATTCGTGTGGAA
ATGAAAACATTTTCATTGTCTCTCAAGCTTGAAAGGCACAGCAGTACCAA
GTTCATTTAGCCGGCAAAAGCCGTTCGCCTCCCTCTAGCTCCACGCTATA
TTATGATATTTATCCTAACGAGCTTAATTTTATTTGATCGAATCTACGGA
GTTGAGCACGGGTCGGTTAACACCACCTTTCTTCAGCCAATATAATTCCC
CTCTTCTAGATTTTTTTCATTTGCTGCTGCACGCGCTACGAAGCCGATTT
CTCATCTCATCATGAGGCGTACAATAATTAGTCAATGGGGTTACCTGAAT
ATGATGCATCCGTTTCTCAAGCAACCATGGGACTATTGTCTCAGTGCCGG
CGGAATCTTGGTAGTAAATGACATCGGTACGCAATTGCGTGACCTGATGA
AATCGGGATTGGCCCGATCGCGGTTGACAGTAGAGATGGACACCGTCGCG
GAAAACGAGAGGATTGAGAGGATCCCGGGAGTACGCACCATATTCAGCCT
GAGTTGAGAAAATGAACAGGCTGACGCGGGACGGGACTGCTGAACCCATC
TCGCCAGACCAAATTCTCATGCGCGAACGGGGACAGGGGAAAATTATTTT
CCCTATTCAGCTGACCACGAGCAGAAGGCAACCAAATCCGGTTGACCTTC
TGCTAAATGTGATGACTATACATTAATATATACAGTACATGTACCCTAAT
ATTTTCGATCGTAACGTGAATGATGGGGTGGGGAAATGGTTCTTGATTCA
GGCGTCGTTTTTGGCGACGACATCAACGGCCGAAGCGCTCTGCTTTTCCC
TCGGAGCGGATTGCGTCATCAACTACCGCAATACCAATTGGTGAGAACAA
CAGCGAGCTCATGTAGTGTTTGTTCTGTACAATAGGTGGACGAGTTTTAA
ATGGGGCTGGGATACTCCGGTCGTTTCCCAACAAGCCCTCCCCCGGCTTA
AAGGGGCCTATTGCTGATCTGGGAGTTTCGTGCTTTGAAGGACCGTAATA
GCTATTCGAAGTGGCCCATGAGAGGAATTGTGACACGGTGGGACATTATA
AATAGTATGCATATAATGAAGTTGGAGCGTTATGCATGCACGTGGATTTG
GTTCTTTTATTTAGGATCAAGCTCTCCCTTTCGGCGATGGGATCACCTAA
CGTGCAAAGTGAACAATTGTTTTATTAATACTTTAGACCCATGGCTCCAA
TGATCCTGAAGATAATTTTTCTCATCTCTCTTCAGTTCACCCCTGCATGA
CACATTTTTATCACGATGTAAGTTCAGCAGCAGCACTCCTCCACTTCGAC
GTCAACTAATGATTCAAATTTCAGTTACTGATACGTGTTCCGCAAGAGGA
CGTTGGTTGCCAAGCCGACTAGACTGCTCGCACGGGGGGTAATGTTTAGT
CAAGAGCTGCGTGTGGTCATCACATATTGCAGAGTACGGTCAACCGGGTT
TGGTTGCCTTCTCATTGTGTTCAGCTTAACAGAGAAAAATATTTTTTCCC
TATCCCCGTTCGCGCCTGAGAATTTGGCCTCGCGAGACGGGTTTGGCAGT
CCCGTCCCGCGTCAGCCTGCTTGTTCTCCCAACCCAGGCTTAATCTGGTG
CGTATTCCCGGGATCCACTCGATCCTCTCGTTTTCCGTGATAGCGTCCAT
CTCTACCGCCAACCGCCATCGGGCCAATCCCGACTTCCTTAGGTCACGCA
ATTGCGAACTGATGGCATTCACCGCCTAGAGTCCACCAGCAATGCGTCAG
TTGCCCTCAAGAAACCTTGAGTAACGGGTGCAATATATTCAGGTAACCCC
GTGGATCGATTATTGTACGCCTCTCTTTTCCCACACCCACTATTTCCGCG
GTGGGCATGTGCTATACAGTCACAAACAGAGCTATAGAGGGTTGGTTTTC
CCATTCTTGTTTTATATACTTCGTCCCATGTATATAGATATACATTATAT
AATCTACCATTAGACCAAGTGGTACGGTAGAAGGGCAGAGGAAAATAATG
GACATCCGAAGCCCCATAGTTATATCCTTTAATCCGTCATACTCCAACGG
AAATATAGATTGCCACATCCATTATGGCGGCCGGCCACCGAGGTACGCGC
CAAACACAACACGCGGACAGCCAGCTAAATTTCGTAAGAAACAAATAGAT
AACCTAGGTTTGTTTGACGCTTAGAGCTGATTGCACGCACGGCAGAGAGG
AGCAGAGCATACCTCAAAAAGTAAGATCGCGCATAAGACACGTTGATTGG
CATTGTGTTTGTTGGTAGTTTGGATGCCCGCTGCTATCATAATCGTATGC
GCTCCCCTAAGCTCTTTTTTGCAATTTTTCCTAATAACACCACATGTTGA
ATTTTCCCTTTGGGTTCGTTCTGCAATTCTTCGGCAGGGCTGCTCACGTG
ACCAGAGAATGCTCACAGTACCTAAGTAGTGCCGGACAAAAACCACACAG
TGCCGACACAGTGCCGGTTTTGGAAATAAAAATCTCACAGTGCCGAACCA
GTACCGGTTTTGGAGACAAAAAATATCACAGTGCCGAACCAGTGCCGGCA
AAAACCTCACAGTGCCAAACCAGTACCGGTTTTGGAAACGAAAAAACTCA
CATTGCATGTATAGCTCGCTACATCTTCAGAGGTCTTACTGCACATTATA
ATATGGCAATTTAATATACTACGGTATGTTTATATTGTGGAGTGTAATAT
CATCTTCGTGCGCGGCAGGTTCGAAAACGAAAGCTTTAAGGAGGCGCCGT
TTGATGTAGTGATCGACTGCATCGGGTGGCGCGATGAGTGGAAGGAGTCC
GTCAAGCACGGGGTGCTTAAGCCGGGTCTTAAGGGGGGGCGCTACGTCGC
TGTCGCTTTTACAGACAGTCCCGAGATGCGCAGCGTGTGGCAGGTACTTT
TCACGCTAATTTTATCCTTACTCTCTAAAGACTGCATTAGGCTTTTTGTT
GCTGCATCCATACATCATTTGTCTATAACGGTATTAGGGATTGGTAACAT
TGGTTGAGAACTTCGGCAGCCCAGCTGCAAACGCGCGTCTACAGCAGTAA
GTAAGCGATGCTCCGTCGCTATTCATACCACTTGTGTGTTTATTTTGTAT
TCGAGGCAGTCGACGTACGCCTGCTCGCAACGAGCGTTGATCGTCATTGA
TCATCGTTGATCATGTTCAATATACAACAGCCAATATCGTGTTCAATACG
GATATCGAGACAAAAAACGACAGTTATTGACAAATTCTTATCCTTCGCCG
CATATGACTTGACACCAATCATATTTACAATTCAAAAGAAAAGTTGAGAG
GATGGGTGGATCGGGTGGGAGCCTTATACCACTGGAAGCTTTCTTCTCTG
TGTTATTTGCGGTATAAGCAAGCTCCACTACCTCCGTCGAAGATAAATGT
GACGATAGCGACCCCTAAAACCAGCAATTTCTTCTACGACTGTCTAGAAC
GGGGACAGGGGAAAATTATTTTCCCTGCTCAGCTGACCACAAGCAGAAGG
CAACCAAATCCGATTGATCCTTCTGCTAAAAGTGAGACCAACAATAACAA
CAGTAATAGCGGCGTAGCGAAATGAAACGGAATTGAAAGAAAGGCGTTTT
TTGCCGCTATTTTCATCCCATTAATGACCTCTTGTTTTCATCACACCTGC
CGACTCGAGGTTGAAAAAACATTTGGATGAAGAAAAAAGCCTTGCCGAAA
GTGTAACGTCCTGTTTAGTTCAGGGAGTGCTATCGTAGCATCACGCCCAA
CAGCAACTCTACCGCGGCGCAGGGGGTCGAACTTGTAGATACGGCCTTTC
GCATGCTGATCCCTTGAACCGACGATGATCTTTATTTTCCGCGCGTTGAA
CCATCTGGTCCCCCCCCCCAACGTGGGATCCGCCTCGCAGGGCATACAAA
TGTTCGTTCCCCAGCTCTTGCGCCTCTCGTGGACGGGCATTAACCGCTTC
CGCCCTACCTACAAGCTCGTCGTTTCCGATCCCACGGCGAAAGACTTGGA
GGAGCTGGCCGGCCTCGTCAGGACGAAGAGGCTGAGGCCCGTCCTCGAGG
CAAGGTCACCGTTCCCCTTCACCGCGGAAGGTGTGAAGGACGCGTATCGG
CTGCAGATGAGCAAACACGCTCACGGGAAGGTTGTGGTGAAGGTTTCGTC
GTCTTCAGTTGGATGAGACGCCCCGGTGATGGACGGGGCGCTCTTGGTCA
TGTATACCTTGTAAGGCTTGGTGAAGGCGGGGGCTCTGACCTTATTGCTT
GCCGCCTGGGTTGCTGAGTTAGGTTAGCTAACATTACAGTAGAGAGATGT
TAGGTTGGCCTCGTTCGCCTCGTTGCCGGGTTGATTTTCCCTTTCGGTTT
GTATATACCTCCAAGATACCTCTGTGCTTGGTTTTCTTCTTCTAATGGTC
GCGTCTCCTATTCTTTTCTTTTCTTTTTTCTTTTTCTTTTTCGGCCTTTT
TCGGCTTCTGGTAGTCTAATATTTATCGTTTCCTCGAGTTTCACTATGTG
CCATGCCAGACAGCAGTACAGTATATATGTACATTATGTAATGTACAATT
CTTCGTATCGTATTCGTGTAAATTGTTTCAGCTTTGCCTTGTTTTGTTTT
GTAACTGTACTCAAGGCCATAATTATATGTTCGTGCATGTCTCACGATTA
AAAAAATCGAAGACTGTGGGAGCGATGCCTTAACGCTTGCTTGTGCATGT
CCAAAGGTATGTATGTATGTACCCAGGAACTTTTCACGAGCGACCTCGGG
TCGTGTACTGTATATGCCTGCACCGACACAGATTAAGGCAGTATTACATT
AAATGAAGCAACGTTTATAGCATTTTCTTCTTAGAGTGTTTAGGTACGAA
GGTATGTTCCGTGGTTTGGCCCGCGCGCAGCGTTTAGAGCCCAGAAAATA
TACTATATGGCAGGGCATACAACGAGGTTGAGTTGGGATGCTACCGGGAC
CGGGGCGAGGAAATTGAATATTCTAACTATGAATGACATAGTTCCTTGGG
GAGAAGAATAAGAGTTAGGCTCAAAGGCGGGCGGGTAGTTCCTTTCTTGT
CATTGGCATCATAAACTAATTGACGCCAGCCACGAAAAAGGCAGTACGCA
TACCAAAGAACGTTCCGAGCAGCGATCCGGGTAAAGTTCTCGGTGTTCTG
AGAGGATTGGTGAAAGCTCAAAGCTGGGGCTGATTTTGACCTATCTCAGA
TGCCATACCAGCCACATGCCTGCAATATAATCGGTGGCACACATGTTAAC
TTCGCGTGTTCTGTAAATTAGTATCTGCTCCTTGATATGTTTTGTGTAAG
GCCATGGCAGATAGAGTTCGTGGCAGTCTCAGATATTCCATGAACGAGTC
AACGTGTATAGGTATACTGTAAGCGTGTGTGTGTATTTATTAAATTACAC
ATGACCGCGCAATCAAGCCGCCATGTAATCTACTCATTCTGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig16321:668..7111+

>mRNA_H-elongata_contig16321.4008.1 ID=mRNA_H-elongata_contig16321.4008.1|Name=mRNA_H-elongata_contig16321.4008.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1536bp|location=Sequence derived from alignment at H-elongata_contig16321:668..7111+ (Himanthalia elongata Himel1 dioecious)
ATGCTCCCCGTGGGGGGTCTGGCGGAGTACATCGCGGTACAGACCAAGTG
GGCGGCGAAGGCCCCCGAAAACATCGATGCCGTCCAGGCGTCGGCACTCC
CCAATAGTCCCTGCGCGGCCATGCACGCCGTGAGGACGGCTAGAATCAGG
CCAGGGGAGCGGGTGCTCGTGCTCGGCGGGTCTGGCGGCGTGGGAACGTC
GCTCTTGCAGCTCGCCAAGGATGCCGGGATGCTCCCCGTGGGGGGTCTGG
CGGAGTACATCGCGGTACAGACCAAGTGGGCGGCGAAGGCCCCCGAAAAC
ATCGATGCCGTCCAGGCGTCGGCACTCCCCAATAGTCCCTGCGCGGCCAT
GCACGCCGTGAGGACGGCTAGAATCAGGCCAGGGGAGCGGGTGCTCGTGC
TCGGCGGGTCTGGCGGCGTGGGAACGTCGCTCTTGCAGCTCGCCAAGGAT
GCCGGGGCGTCGTTTTTGGCGACGACATCAACGGCCGAAGCGCTCTGCTT
TTCCCTCGGAGCGGATTGCGTCATCAACTACCGCAATACCAATTGGCGTC
GTTTTTGGCGACGACATCAACGGCCGAAGCGCTCTGCTTTTCCCTCGGAG
CGGATTGCGTCATCAACTACCGCAATACCAATTGGTTCGAAAACGAAAGC
TTTAAGGAGGCGCCGTTTGATGTAGTGATCGACTGCATCGGGTGGCGCGA
TGAGTGGAAGGAGTCCGTCAAGCACGGGGTGCTTAAGCCGGGTCTTAAGG
GGGGGCGCTACGTCGCTGTCGCTTTTACAGACAGTCCCGAGATGCGCAGC
GTGTGGCAGGTTCGAAAACGAAAGCTTTAAGGAGGCGCCGTTTGATGTAG
TGATCGACTGCATCGGGTGGCGCGATGAGTGGAAGGAGTCCGTCAAGCAC
GGGGTGCTTAAGCCGGGTCTTAAGGGGGGGCGCTACGTCGCTGTCGCTTT
TACAGACAGTCCCGAGATGCGCAGCGTGTGGCAGGGCATACAAATGTTCG
TTCCCCAGCTCTTGCGCCTCTCGTGGACGGGCATTAACCGCTTCCGCCCT
ACCTACAAGCTCGTCGTTTCCGATCCCACGGCGAAAGACTTGGAGGAGCT
GGCCGGCCTCGTCAGGACGAAGAGGCTGAGGCCCGTCCTCGAGGCAAGGT
CACCGTTCCCCTTCACCGCGGAAGGTGTGAAGGACGCGTATCGGCTGCAG
ATGAGCAAACACGCTCACGGGAAGGTTGTGGTGAAGGTTTCGTCGTCTTC
AGTTGGATGAGGCATACAAATGTTCGTTCCCCAGCTCTTGCGCCTCTCGT
GGACGGGCATTAACCGCTTCCGCCCTACCTACAAGCTCGTCGTTTCCGAT
CCCACGGCGAAAGACTTGGAGGAGCTGGCCGGCCTCGTCAGGACGAAGAG
GCTGAGGCCCGTCCTCGAGGCAAGGTCACCGTTCCCCTTCACCGCGGAAG
GTGTGAAGGACGCGTATCGGCTGCAGATGAGCAAACACGCTCACGGGAAG
GTTGTGGTGAAGGTTTCGTCGTCTTCAGTTGGATGA
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