mRNA_H-elongata_contig163170.4006.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163170.4006.1
Unique NamemRNA_H-elongata_contig163170.4006.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163170.4006.1 vs. uniprot
Match: A0A6H5JXT8_9PHAE (Nudix hydrolase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXT8_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.320e-17
Identity = 37/41 (90.24%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    1 QVSYRYGTRKGLSTKFLCVFDLEVPEDFAPYNGDGEVMSPL 123
            QVSYRYGTRKGLSTKFLCVFDLEVPEDF PYNGDGEV   L
Sbjct:  528 QVSYRYGTRKGLSTKFLCVFDLEVPEDFVPYNGDGEVEEFL 568
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BLAST of mRNA_H-elongata_contig163170.4006.1 vs. uniprot
Match: A0A836CMM1_9STRA (Adenylate kinase family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMM1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.460e-12
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 QVSYRYGTRKGLSTKFLCVFDLEVPEDFAPYNGDGEV 111
            QVSYRY TRKGLSTK L VFDL++PEDF P+NGDGEV
Sbjct:  454 QVSYRYSTRKGLSTKILTVFDLQLPEDFVPFNGDGEV 490
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BLAST of mRNA_H-elongata_contig163170.4006.1 vs. uniprot
Match: A0A8J2WZ39_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WZ39_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.740e-9
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    4 VSYRYGTRKGLSTKFLCVFDLEVPEDFAPYNGDGEV 111
            VSYRY  R+GLSTK L VFDLE+PED  P NGDGEV
Sbjct:  591 VSYRYAARRGLSTKTLAVFDLELPEDLVPINGDGEV 626
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BLAST of mRNA_H-elongata_contig163170.4006.1 vs. uniprot
Match: A0A7S2TUJ8_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TUJ8_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.720e-8
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    4 VSYRYGTRKGLSTKFLCVFDLEVPEDFAPYNGDGEV 111
            VSYRY TR+GLSTK + V+DL +PED  P NGDGEV
Sbjct:   73 VSYRYSTRRGLSTKTIAVYDLGLPEDVFPSNGDGEV 108
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BLAST of mRNA_H-elongata_contig163170.4006.1 vs. uniprot
Match: A0A5J4YS76_PORPP (Nudix hydrolase 24, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YS76_PORPP)

HSP 1 Score: 56.6 bits (135), Expect = 3.920e-8
Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 VSYRYGTRKGLSTKFLCVFDLEVPEDFAPYNGDGEVMS 117
            VSYRY TRKGLSTK L  +D+E+P DF P N DGEV +
Sbjct:  263 VSYRYSTRKGLSTKTLFTYDIELPGDFEPVNSDGEVEA 300
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BLAST of mRNA_H-elongata_contig163170.4006.1 vs. uniprot
Match: A0A7S4DLT4_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DLT4_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 3.980e-8
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    4 VSYRYGTRKGLSTKFLCVFDLEVPEDFAPYNGDGEV 111
            VSYRY TR+GLSTK + V+DL++P+D  P NGDGEV
Sbjct:  648 VSYRYSTRRGLSTKTIAVYDLQLPDDVFPSNGDGEV 683
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BLAST of mRNA_H-elongata_contig163170.4006.1 vs. uniprot
Match: A0A0M0JLU6_9EUKA (Ntp pyrophosphohydrolase including oxidative damage repair enzyme n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JLU6_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 1.020e-7
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    4 VSYRYGTRKGLSTKFLCVFDLEVPEDFAPYNGDGEV 111
            VSYRY TRKGLSTK L +FDLE+P+   P  GDGEV
Sbjct:  616 VSYRYATRKGLSTKHLAIFDLEMPKGMLPMCGDGEV 651
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BLAST of mRNA_H-elongata_contig163170.4006.1 vs. uniprot
Match: A0A7S2B3Z2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B3Z2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.350e-7
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    4 VSYRYGTRKGLSTKFLCVFDLEVPEDFAPYNGDGEV 111
            +SYRY TRKGLSTK L  +DLEVP+   P   DGEV
Sbjct:   25 ISYRYTTRKGLSTKILATYDLEVPQGLLPICSDGEV 60
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BLAST of mRNA_H-elongata_contig163170.4006.1 vs. uniprot
Match: A0A7S0YUN2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YUN2_9CRYP)

HSP 1 Score: 53.1 bits (126), Expect = 4.630e-7
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    4 VSYRYGTRKGLSTKFLCVFDLEVPEDFAPYNGDGEV 111
            VSYRY T +GL TK L V+D+E+PED+ P+NG+GE+
Sbjct:  114 VSYRYETAQGLVTKVLHVYDMELPEDWRPFNGNGEI 149
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BLAST of mRNA_H-elongata_contig163170.4006.1 vs. uniprot
Match: A0A7S0Y4R3_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y4R3_HEMAN)

HSP 1 Score: 50.4 bits (119), Expect = 2.050e-6
Identity = 20/36 (55.56%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    4 VSYRYGTRKGLSTKFLCVFDLEVPEDFAPYNGDGEV 111
            VSYRY T +GL+TK L V+D+E+P ++ P+NG+GE+
Sbjct:   40 VSYRYETAQGLATKVLHVYDMELPRNWRPFNGNGEI 75
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163170.4006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JXT8_9PHAE8.320e-1790.24Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A836CMM1_9STRA2.460e-1281.08Adenylate kinase family protein n=1 Tax=Tribonema ... [more]
A0A8J2WZ39_9STRA1.740e-975.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2TUJ8_9EUKA1.720e-869.44Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A5J4YS76_PORPP3.920e-865.79Nudix hydrolase 24, chloroplastic n=1 Tax=Porphyri... [more]
A0A7S4DLT4_9EUKA3.980e-866.67Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
A0A0M0JLU6_9EUKA1.020e-769.44Ntp pyrophosphohydrolase including oxidative damag... [more]
A0A7S2B3Z2_9STRA4.350e-763.89Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S0YUN2_9CRYP4.630e-761.11Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S0Y4R3_HEMAN2.050e-655.56Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163170contigH-elongata_contig163170:1199..1333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue7.7e-14
Seed eggNOG ortholog2880.D8LDL6
KEGG rclassRC00002,RC00017
KEGG koko:K00939,ko:K00949,ko:K06672,ko:K14787
KEGG ReactionR00127,R00619,R01547,R11319
KEGG Pathwayko00230,ko00730,ko01100,ko01110,ko01130,ko04111,map00230,map00730,map01100,map01110,map01130,map04111
KEGG ModuleM00049
GOsGO:0003674,GO:0003824,GO:0004788,GO:0006139,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008655,GO:0009058,GO:0009108,GO:0009110,GO:0009228,GO:0009229,GO:0009987,GO:0016462,GO:0016740,GO:0016772,GO:0016778,GO:0016787,GO:0016817,GO:0016818,GO:0017110,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0034641,GO:0034654,GO:0036172,GO:0042357,GO:0042364,GO:0042723,GO:0042724,GO:0043094,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044715,GO:0046483,GO:0051186,GO:0051188,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.8-oxo-dGDP phosphatase activity
EggNOG OGsCOG0494@1,COG0563@1,KOG3078@2759,KOG4313@2759
EC2.7.4.3,2.7.6.2
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03036,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929955.0222237-CDS-H-elongata_contig163170:1198..13331622929955.0222237-CDS-H-elongata_contig163170:1198..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163170 1199..1333 +
1691679222.249168-CDS-H-elongata_contig163170:1198..13331691679222.249168-CDS-H-elongata_contig163170:1198..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163170 1199..1333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163170.4006.1prot_H-elongata_contig163170.4006.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163170 1199..1333 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163170.4006.1

>prot_H-elongata_contig163170.4006.1 ID=prot_H-elongata_contig163170.4006.1|Name=mRNA_H-elongata_contig163170.4006.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=45bp
QVSYRYGTRKGLSTKFLCVFDLEVPEDFAPYNGDGEVMSPLFGL*
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mRNA from alignment at H-elongata_contig163170:1199..1333+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163170.4006.1 ID=mRNA_H-elongata_contig163170.4006.1|Name=mRNA_H-elongata_contig163170.4006.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=135bp|location=Sequence derived from alignment at H-elongata_contig163170:1199..1333+ (Himanthalia elongata Himel1 dioecious)
CAGGTTTCCTACCGTTACGGCACCAGGAAGGGACTAAGTACCAAGTTTCT
CTGCGTGTTCGACCTCGAGGTCCCGGAAGATTTCGCTCCTTACAACGGGG
ATGGAGAGGTAATGTCCCCTCTTTTTGGGTTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig163170:1199..1333+

>mRNA_H-elongata_contig163170.4006.1 ID=mRNA_H-elongata_contig163170.4006.1|Name=mRNA_H-elongata_contig163170.4006.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=270bp|location=Sequence derived from alignment at H-elongata_contig163170:1199..1333+ (Himanthalia elongata Himel1 dioecious)
CAGGTTTCCTACCGTTACGGCACCAGGAAGGGACTAAGTACCAAGTTTCT
CTGCGTGTTCGACCTCGAGGTCCCGGAAGATTTCGCTCCTTACAACGGGG
ATGGAGAGGTAATGTCCCCTCTTTTTGGGTTATAACAGGTTTCCTACCGT
TACGGCACCAGGAAGGGACTAAGTACCAAGTTTCTCTGCGTGTTCGACCT
CGAGGTCCCGGAAGATTTCGCTCCTTACAACGGGGATGGAGAGGTAATGT
CCCCTCTTTTTGGGTTATAA
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