mRNA_H-elongata_contig163085.4005.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig163085.4005.1
Unique NamemRNA_H-elongata_contig163085.4005.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig163085.4005.1 vs. uniprot
Match: D7FZ23_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ23_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.650e-17
Identity = 36/47 (76.60%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 RGFFPLYELCGSIIAMNLARRDIMGERINKLQLFAVAASLNAYGIFR 141
            RGFFPL+ELCGSI+AMNLARRDI+G+R+N+LQLF V  SLNAY +FR
Sbjct:  644 RGFFPLFELCGSIMAMNLARRDILGDRMNRLQLFFVPVSLNAYAVFR 690
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BLAST of mRNA_H-elongata_contig163085.4005.1 vs. uniprot
Match: A0A6H5L6A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A5_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.690e-16
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 RGFFPLYELCGSIIAMNLARRDIMGERINKLQLFAVAASLNAYGIFR 141
            RGFFPL+ELCGSI+AMNLARRDI+G+R+N+LQLF V  +LNAY +FR
Sbjct:  927 RGFFPLFELCGSIMAMNLARRDILGDRMNRLQLFFVPVALNAYAVFR 973
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BLAST of mRNA_H-elongata_contig163085.4005.1 vs. uniprot
Match: A0A835YXW0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.380e-9
Identity = 27/47 (57.45%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:    1 RGFFPLYELCGSIIAMNLARRDIMGERINKLQLFAVAASLNAYGIFR 141
            RGFFPL ELC ++ AMNLARRDI+GER+   +++  AA+L+A+  FR
Sbjct:  290 RGFFPLQELCAALTAMNLARRDILGERVPAWRVYLPAAALHAWANFR 336
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BLAST of mRNA_H-elongata_contig163085.4005.1 vs. uniprot
Match: W7TWJ8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWJ8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-8
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 RGFFPLYELCGSIIAMNLARRDIMGERINKLQLFAVAASLNAYGIFR 141
            RGFFP++ELCG+  A+NL RRDI+GER++ ++L A A  L++   FR
Sbjct:  333 RGFFPVHELCGAFTALNLVRRDILGERMSWIRLLAPAVILHSMANFR 379
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BLAST of mRNA_H-elongata_contig163085.4005.1 vs. uniprot
Match: A0A4D9D876_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D876_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-8
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 RGFFPLYELCGSIIAMNLARRDIMGERINKLQLFAVAASLNAYGIFR 141
            RGFFP++ELCG+  A+NL RRDI+GER++ ++L A A  L++   FR
Sbjct:  599 RGFFPVHELCGAFTALNLVRRDILGERMSWIRLLAPAVILHSMANFR 645
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163085.4005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FZ23_ECTSI6.650e-1776.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6A5_9PHAE1.690e-1674.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YXW0_9STRA1.380e-957.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TWJ8_9STRA1.700e-853.19Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A4D9D876_9STRA1.700e-853.19Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig163085contigH-elongata_contig163085:19..159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.0
Seed ortholog evalue8e-14
Seed eggNOG ortholog2880.D7FZ23
EggNOG OGs2CZK1@1,2SAQY@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size141
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929954.9780247-CDS-H-elongata_contig163085:18..1591622929954.9780247-CDS-H-elongata_contig163085:18..159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163085 19..159 +
1691679222.2387674-CDS-H-elongata_contig163085:18..1591691679222.2387674-CDS-H-elongata_contig163085:18..159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig163085 19..159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig163085.4005.1prot_H-elongata_contig163085.4005.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig163085 19..159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig163085.4005.1

>prot_H-elongata_contig163085.4005.1 ID=prot_H-elongata_contig163085.4005.1|Name=mRNA_H-elongata_contig163085.4005.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
RGFFPLYELCGSIIAMNLARRDIMGERINKLQLFAVAASLNAYGIFR
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mRNA from alignment at H-elongata_contig163085:19..159+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig163085.4005.1 ID=mRNA_H-elongata_contig163085.4005.1|Name=mRNA_H-elongata_contig163085.4005.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig163085:19..159+ (Himanthalia elongata Himel1 dioecious)
AGGGGCTTTTTCCCGCTGTACGAGCTGTGTGGGTCGATCATCGCGATGAA
CCTTGCTCGCCGAGATATCATGGGGGAAAGGATCAACAAGTTGCAGCTCT
TCGCCGTTGCCGCGTCCCTTAACGCCTACGGTATCTTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig163085:19..159+

>mRNA_H-elongata_contig163085.4005.1 ID=mRNA_H-elongata_contig163085.4005.1|Name=mRNA_H-elongata_contig163085.4005.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig163085:19..159+ (Himanthalia elongata Himel1 dioecious)
AGGGGCTTTTTCCCGCTGTACGAGCTGTGTGGGTCGATCATCGCGATGAA
CCTTGCTCGCCGAGATATCATGGGGGAAAGGATCAACAAGTTGCAGCTCT
TCGCCGTTGCCGCGTCCCTTAACGCCTACGGTATCTTCAGGAGGGGCTTT
TTCCCGCTGTACGAGCTGTGTGGGTCGATCATCGCGATGAACCTTGCTCG
CCGAGATATCATGGGGGAAAGGATCAACAAGTTGCAGCTCTTCGCCGTTG
CCGCGTCCCTTAACGCCTACGGTATCTTCAGG
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