mRNA_H-elongata_contig163.3998.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig163.3998.1 vs. uniprot
Match: D7FK07_ECTSI (Calmodulin-binding WW domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK07_ECTSI) HSP 1 Score: 862 bits (2227), Expect = 4.780e-263 Identity = 472/823 (57.35%), Postives = 587/823 (71.32%), Query Frame = 1
Query: 1 RLEELTSPSQE-EHRRAQMDEQRRMKSSLSMLAAGADMIRRIYCVPRAEIAARGGPATKLVDALQWLPDAADKEEQLNRGRRAVRGDTFEVVDLHRRSILAITTRLFDLLHRFVELGPATKTVQRAYRLYTRWNLLVRSRHQLSLQRHLDNYLWERRTNHVKDEWEIARETEVKGYQRQYEEWVRQEEKRLVEEELRKWGVMRYGWQEEGLEGVPGVKVYRFYKRVRAKHNAAEVPLKGPEMGDLIQGEQQESNIYPLYRFEDETASRIIGRTGRAYVARRRLFIIKREKMRAERERLERLEWEKAERVAEQHLTVCLPLVTISAKRFFFAAADDLGDDPYFEDEYDQACDNHLDLWVGFLLDARTPARYTENTLFSYGGHQKGTR-------VASSAIADCSFTSTSKLTRP-RGKGDAGGNWEGP-GSGWMRGEVYLVNPTQVTSVDGLQRYPKGTFGIRYLDTGLKIPDVPRECLRVITLTPGMRVEARFDGRPDFYPGIVVRANKRNGRALSYTVEYEDGDVEKAVKRGHIAPFPDEMTALDAIAAKARESAMSRRYRTATLRNRRSTVASAWYERTRKAEKDYLAAASAIPAVASFQAIT----------HHFQRYT----RMDHAGGK--DLGRQPKSRGKGCRGDLVRNVWEDTAGGDADTLACIGMIEGAWKLREETRRRVNIEVKIEYTRQATRFGYLKVCSPSGGVLWKSSVTGTYTRGRPRYTFEEDSAVRKVQAAWAGLKGRKAFRSMLANESIGGLTITCIKEASSLAWIGHEEEGLTIKMWLLRAGVPLSEAHLVANGASKAISQMLAT 2391
RL L +P+ E EHRRA +++RR+ SSLS L+AGAD + +YCVP AE A GGPATKL++ L+ LP+ AD E+Q R RRA RGDTFEV+D HRR+++A+ T L+D+L ELG A+K V+RAYR + +LL SRH+L+L+RH D YL ER TNHVK EWE AR+ E + QRQYEEW+RQEEKR VEEEL +WGV+RYGW+EE LEGVPGVKVYR YKRV+AK +AAEV +GP+M D++ Q+ES +YPLYR+EDE A+R + R GRAY+ARR L+I++R+KMR E+ERLER+EWE+AER+A+QH+T LPLVT+SAKR+F A D+L DDPY E E++ D+HL LWVGFL+DARTPAR ++ S G +KG S+ T P RG+G +GG W GP G GWMRGEV+LVNPT+V S +G++RYPKGTFGIRYLDTG +IPDVPR+C+R +TLTPGM+VEAR+ G D+YPG++ N RNG ALSY+V+YEDGD EK VKRGHIAPFP+E+ ALDA+AA+ R A RR R L+ RR+ VASAW ER +KAE DYLA HHF R+ A GK G + R RG R+V + GGD D LACIGMIE A +L ETR RV + +KI+YTRQATRFG +V S G+LWKS+VT +TRGRPRYTFEE +A+RKVQAAWAG GR+AFR LA +SI GL + CI EASS AWIGHEEEGLTI+MWLLRAGV +AH VA GA+KA+SQ+ A+
Sbjct: 1980 RLPSLITPTPEDEHRRASANDRRRLASSLSFLSAGADRVCFLYCVPPAETRAGGGPATKLLEDLRSLPEKADNEKQQQRARRAARGDTFEVMDEHRRAMMAVATSLYDILQHLTELGHASKIVRRAYRSHAGRSLLALSRHELALKRHYDGYLLERGTNHVKVEWERARKAEAEEQQRQYEEWLRQEEKRHVEEELYRWGVLRYGWREEDLEGVPGVKVYRLYKRVQAKWDAAEVGPRGPDMVDML---QEESEVYPLYRYEDEMAARKLVRAGRAYIARRVLYILRRDKMRLEKERLERIEWERAERIADQHVTARLPLVTVSAKRYFHATPDELNDDPYIEGEFEPPSDDHLSLWVGFLVDARTPARPSKTG--STGRGRKGNNNXXXXXXXXXXXXXXXXXXRASQATSPTRGEGASGGQWRGPAGEGWMRGEVFLVNPTEVVSAEGVKRYPKGTFGIRYLDTGEEIPDVPRDCIRALTLTPGMKVEARYGGGLDYYPGVIEGVNTRNGLALSYSVKYEDGDTEKVVKRGHIAPFPEEVAALDAVAAELRGKAAVRRDRAKFLQRRRAVVASAWRERVQKAEDDYLAXXXXXXXXXXXXXXXXXXXXXXXXGHHFASAAVAARRVGGAKGKRGSTGVRGGVRAGNGRGGSGRDV---SGGGDVDALACIGMIEAAERLHTETRPRVAVALKIDYTRQATRFGCSQV-QTSAGLLWKSNVTKAFTRGRPRYTFEESAAMRKVQAAWAGFMGRRAFRDQLAKQSIRGLAMVCINEASSHAWIGHEEEGLTIEMWLLRAGVSPPDAHRVAAGATKALSQLAAS 2793
BLAST of mRNA_H-elongata_contig163.3998.1 vs. uniprot
Match: A0A7S2NUD7_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NUD7_9STRA) HSP 1 Score: 240 bits (612), Expect = 3.970e-62 Identity = 204/818 (24.94%), Postives = 323/818 (39.49%), Query Frame = 3
Query: 2712 MNWFEGPSDRRTVASVIAALEPEAYKIIREAFPGSQSRAESMAKNVASSAYPITRMQFKAWLKRHEGRPGAAREAMTEELLNVPVTSTRAEEAKAYEIYRIFCQRLSVLAANMRLKGLWAIIARAYSKAEEIIAADTGGLTSTTIDASLSSWTKTDAIFSNNRTKSGRISVANGRIKRNAETTGETGVAASLGTNFDV-----SGAVAIASSSWAHARAALLLRRNAFAVALCWVAGAKAIQVAFRGFRCRSSYHSLLARRNRAAITLQTAQRRRKAFAVVADLKAERGSTWEQLWDGDTCRAYFFNKETAESYWEEPNVLFRPMIRDRQTCALMQAWPQLERELQGATSAQPGF---CMECKTEMATRICDQCEFPRGSKHHRWGDSKWHLCFVCFAERHANTPELSTHTFTAIRLLRVDALACSLCSQAASRRCKGLQVPHRSLVVTARMLQHARSSEEGQEQVPVSREEFGRVV-TVCALPYSNAWADVMYGICSQNEKGVAVGARQNADFGDGSSSKARKRAKKAPRTREEFWSSFNSMLECAQDDCDDVLCSECWERVHRRGLRAKHRWEGFNAGSLACEACCRNPAERKC-NVXXXXXXXXXXXXXXXXXXXXXXXXXIIQEEPLERPRCDECSRRVGDRRCKDCKANLCDSCAVFVHPKVCSHSVAGESTKLPGKDQSHLPWLPSSPVGVSEGLMHSTSTLNKKQVEELLATLELNGTELTGDPTILRILDCLLGIEEKGTTKSQQGRKEWSKEGKDGGNEEEGMPLVCDMCGKPPDSECEQCGTIYCSNTWVGNPGCFIKDHERGNRRMH 5135
+N+F D R++ IA + Y+I+ + + + R + MA N+ S +P+T Q +A+L+R+EG+P A+E + E +L++P + +E K Y + + ++++ + L L+ + R +A + FDV G + +++ + A+ AL+LR +A + W A + IQ FRG + SY + A R + T+Q R A DL A++ S WEQLWD + Y+++ E+ E+ WEEP V +RPM+ +R++ L+QAWP L + AT +Q + C +C E+ATR C E S G CF+CF E H P + H F I + + L C +C ++R+C GL++ S + +++ SS G+ +SR+EF V+ T LP S A Y C + A+ N W+ F ++ AQ +CD C+ECW+ H G R H + G+ A +L C C + PA+++C I++ + + C CS RVG +CK+C CD+C F H + C+ V+E ++ NGT P C +C PPD CE CG +YCS TW+GNPGCF K H +G R H
Sbjct: 86 INYFGSARDTRSLNDCIAHSYDDLYRIMLKKYKNNAQRVKRMANNLLESQFPVTFGQVEAFLQRYEGKPRLAQENIGE-VLDIPTLADEVDELKVYHVLKSCVEKVANMMKKSGLISLYLKLRRWLDEAASM---------------------------------------------------------------FDVHSPLVEGHMNCSTNRRSAAKGALILREDACKAIIEWWASSILIQKTFRGHQQYLSYLEIRAHRYNSVATIQCFIRLGLAVQCKEDLLAQQQSQWEQLWDDEKELFYWYDTESGETTWEEPAV-YRPMVPERRSQKLIQAWPLLGK----ATRSQNKYEQMCAKCADEIATRACSCSECAANSAS---GRKSKPFCFICFHEEHRGQPR-NMHNFEYI-INKARPLMCCICELPSTRQCFGLRISASSKYEISTLIET--SSTTGRV---LSRDEFTDVIRTKIKLPMSRARVIAAYESCRGKDT-----AKSNNRI---------------------LWTRFQRYVQSAQKECDGHYCTECWDNSHASGSRLHHFFIGYKAMALVCVECQKAPAQKRCVECQDDFCSTCALAFHKRGKRSRHSLQNIVESIDVGQVYCRSCSVRVGTEQCKNCGGQFCDACERFFHREKCN---------------------------VAENII-------------------ANGT----------------------------------------------FPPTCSVCANPPDKLCEDCGEVYCSATWIGNPGCFRKMHVKGERLHH 706
BLAST of mRNA_H-elongata_contig163.3998.1 vs. uniprot
Match: A0A7S2FUP0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FUP0_9STRA) HSP 1 Score: 150 bits (379), Expect = 9.900e-36 Identity = 111/376 (29.52%), Postives = 167/376 (44.41%), Query Frame = 1
Query: 1255 GSGWMRGEVYLVNPTQVTSVDGLQRYPKGTFGIRYLDTGLKIPDVPRECLRVITLTPGMRVEARFDGRPDFYPGIVVRANKRNGRALSYTVEYEDGDVEKAVKRGHIAPFPDEMTALDAIAAKARESAMSRRYRTATLRNRRSTVASAWYERTRKAEKDYLAAASAIPAVASFQAITHHFQRYTRMDHAGGKDLGRQPKSRGKGCRGDL-VRNVWEDTAGGDADTLACIGMIEGAWKLREETRRRVNIEVKIEYTRQATRFGYLKVCSPSGGVLWKSSV-TGTYTRGRPRYTFEEDSAVRKVQAAWAGLKGRKAFRSMLANESIGGLTITCIKEASSLAWIGHEEEGLTIKMWLLRAGVPLSEAHLVANGASKAIS 2376
G + G VY VNPTQ GL+ YPKGTFG+ Y D G P VPR +R+ L GMRVEAR+ G F+PG V N R+G+ LSY + YEDG+ E+A KRG I +++ FQ + + A ++ R K G DL + A G + L+ +E +L + T + + ++I+YT R+G+ + + S + +V T T RP +T EE+ + +QAA + GR F+ L ES+ + TC+ A+ AW+G ++EGLT+++WL R G+ +H+V KAI+
Sbjct: 27 GQHYFSGSVYQVNPTQYYDGTGLKMYPKGTFGVMY-DDGDFEPAVPRNLIRIARLQVGMRVEARYGGHSAFFPGTVAGVNSRDGQVLSYEIAYEDGENERACKRGMIRLDEEQLV--------------------------------------------------------MFQETWQDLEDQRLISEAQAENATRAYKDMQAGAEKDLETMKLLRTGASGKSVDLSDKQELE---RLYDSTCPHIRLRLRIKYTCVGMRYGWKSMTTESTKRTYYLNVLTKETTWTRPSFTLEEEVCSKIIQAAVRTMLGRLYFQRRLMGESLLEVVDTCVAAAAKDAWVGFKDEGLTLELWLNRMGL----SHVVRAVRDKAIA 338
BLAST of mRNA_H-elongata_contig163.3998.1 vs. uniprot
Match: A0A6H5KAI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI1_9PHAE) HSP 1 Score: 135 bits (341), Expect = 5.150e-28 Identity = 75/143 (52.45%), Postives = 102/143 (71.33%), Query Frame = 1
Query: 1 RLEELTSPSQE-EHRRAQMDEQRRMKSSLSMLAAGADMIRRIYCVPRAEIAARGGPATKLVDALQWLPDAADKEEQLNRGRRAVRGDTFEVVDLHRRSILAITTRLFDLLHRFVELGPATKTVQRAYRLYTRWNLLVRSRHQL 426
RL L +P+ E EHRRA +++RR+ SLS L+AGAD + +Y VP AE A GGPA+KL++ L+ LP+ AD EEQ R RRA RGDTFEV+D HRR+++A+ T L+D+L ELG A+K V+RAYR + +LL SRH++
Sbjct: 1861 RLPSLITPTPEDEHRRASANDRRRLALSLSFLSAGADRVCLLYRVPPAEARAGGGPASKLLEDLRSLPEKADNEEQRQRARRAARGDTFEVMDEHRRAMMAVATSLYDILQHLTELGHASKIVRRAYRSHAGRSLLALSRHEV 2003
BLAST of mRNA_H-elongata_contig163.3998.1 vs. uniprot
Match: A0A6H5KMU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMU5_9PHAE) HSP 1 Score: 119 bits (297), Expect = 1.230e-27 Identity = 58/102 (56.86%), Postives = 70/102 (68.63%), Query Frame = 3
Query: 4995 MPLVCDMCGKPPDSECEQCGTIYCSNTWVGNPGCFIKDHERGNRRMHTKKEYTYAKYERMKAKKLEKGNQEEKEREMCAAGVTRAKDKAERRMRMKAVQERE 5300
MPLVCD+CGK PD ECE+CGT+YCSNTWVGNPGCFI+DHERGNRR HTK+ YT+AK +AK G R +KA+++ R+K QERE
Sbjct: 1 MPLVCDVCGKTPDVECEECGTVYCSNTWVGNPGCFIRDHERGNRRKHTKRGYTHAKDLLKRAKXXXXXXXXXXXXXXXQNGEARRDEKADKKRRLKLAQERE 102
BLAST of mRNA_H-elongata_contig163.3998.1 vs. uniprot
Match: A0A482SRF5_9ARCH (WW domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SRF5_9ARCH) HSP 1 Score: 115 bits (289), Expect = 1.850e-22 Identity = 142/507 (28.01%), Postives = 215/507 (42.41%), Query Frame = 3
Query: 3342 HARAALLLRRNAFAVALCWVAGAKAIQVAFRGFRCRSSYHSLLARRNRAAITLQTAQRRRKAFAVVADLKAERGSTWEQLWDGDTCRAYFFNKETAESYWEEP-NVLFRPMIRDRQTCALMQAWPQLE-----------RELQGATSAQPGFCMECKTEMATRICDQCEFPRGSKHHRWGDSKWHL-------CFVCFAERHANTPE------------LSTHTFTAIRLLRVDAL--ACSLCSQAASRRCKGLQVPHRSLVVTARMLQHARSSEEGQEQVPVSREEFGRVVTVCALPYSNAWADVMYGICSQNEKGVAVGARQNADFGDGSSSKARKRAKKAPRTREEFWSSFNSM---LECAQDDCDDVLCSECWERVHRRGLRAKHRWEGFNAGSLACEACCRNPAERKCNVXXXXXXXXXXXXXXXXXXXXXXXXXIIQEEPLERPR--CDECSRRVGDRRCKD-CKANLCDSCAVFVHPKVCSHSVAGESTKLPGKDQSHLP 4745
A+ A ++R++ F L +A AK +Q R F R + A+ L+ + S WEQLWD R Y++N +T S ++EP + ++RP+IR++ + ALMQAWP L ++ A +++ C C + C C S+ D+K ++ C CF H + E ++ T +I VD L C +C ++A R+C+G P+ E+ + + W V+ Q+E G R+ D ++ + +P + N+M LE + +CD+ C C+++VH G R HRW F + C C PA C XXXXXXXXXXXXXXXXXXXXXX +I+EE LER + C C+RR D+ D C +C+ C F H CS ++ +T L G +SH P
Sbjct: 85 EAKGAWMIRQDIFEYLLSLIASAKVVQRNVRTFILRKKFVIXXXXXXXXXXXXXXXXXXXLAYRKAGWLRRQLYSVWEQLWDNRYHRLYYYNIDTHYSQYDEPPDRVYRPLIREKHSAALMQAWPHLRDAATQANAPVLSAMEAANASKYLLCNICNQRACVKYCLDCHQEGESQQILHEDTKEYMVSRPVTYCLPCFVHEHPESNEEKAKHRSHVFEDAASPTAVSIGFDAVDRLYLKCCMCGESAIRKCQG----------------------------PLDDEQIDLICRQLQRTPIDQWKRVL-----QDEN--VGGERKVMSILDQIMTEETPKESLSPSALLVAPNQLNAMRAALERLRSECDESYCKSCYKQVHSGGKRIHHRWVSFQERAPVCVVCTSTPAVFNCIEXXXXXXXXXXXXXXXXXXXXXXKKEVIKEE-LERNQSYCFICTRRAADKCAFDRCNKMVCECCFEFKHKGKCSFNML--ATPLIGS-RSHSP 552
BLAST of mRNA_H-elongata_contig163.3998.1 vs. uniprot
Match: A0A7S4K1P9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K1P9_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 4.810e-12 Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = 3
Query: 3555 ERGSTWEQLWDGDTCRAYFFNKETAESYWEEPNVLFRPMIRDRQTCALMQAWPQLERELQGATSAQPGFCMECKTEMATRICDQCEFPRGSKHHRWGDSKWHLCFVCFAERH 3890
++ S+ EQL D Y+F+KE+ E+ WEEP+ +RPMIR R L+QAWPQL+ L+ ++ C CKTE+ATR C+ C GSK C +C+ H
Sbjct: 25 QQASSLEQLCS-DAGAFYWFDKESGEAVWEEPDKPYRPMIRVRS--GLIQAWPQLD--LRNKPNSGIVLCSTCKTEIATRACNICIENGGSKA---------FCLLCYVTEH 122
BLAST of mRNA_H-elongata_contig163.3998.1 vs. uniprot
Match: A0A7S3JS18_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS18_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 4.880e-8 Identity = 41/95 (43.16%), Postives = 53/95 (55.79%), Query Frame = 3
Query: 4998 PLVCDMCGKPPDSECEQCGTIYCSNTWVGNPGCFIKDHERGNRRMHTKKEYT-YAKYERMKAKKLEKGNQE----EKEREMCAAGVTRAKDKAER 5267
P C +CG+ PDS CE+C +YC TW+G P CF K H +GNRR H Y A ER + ++ E G +E E ER AA RA ++A R
Sbjct: 1138 PTKCAICGRKPDSRCEECDEVYC--TWMGKPRCFAKHHAKGNRRTHRLVPYNAMADMERRRREEEETGRKEAEAFEAERARTAAAFERACEEARR 1230
BLAST of mRNA_H-elongata_contig163.3998.1 vs. uniprot
Match: A0A7S4MK78_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MK78_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 4.290e-6 Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 3
Query: 5028 PDSECEQCGTIYCSNTWVGNPGCFIKDHERGNRRMHTKK 5144
PD C +CG +YCS TW+GNPGCF + H RGNR H+ K
Sbjct: 68 PDVRCRECGDVYCSITWLGNPGCFRQMHSRGNRTTHSAK 106
BLAST of mRNA_H-elongata_contig163.3998.1 vs. uniprot
Match: A0A7S2CNG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CNG6_9STRA) HSP 1 Score: 58.5 bits (140), Expect = 6.080e-6 Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 3
Query: 5058 IYCSNTWVGNPGCFIKDHERGNRRMHTKKEYTY 5156
+YCS W+GNPGCF K H +GNRR HTK+ YTY
Sbjct: 72 VYCSVKWMGNPGCFAKQHRKGNRRTHTKEPYTY 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig163.3998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig163.3998.1 >prot_H-elongata_contig163.3998.1 ID=prot_H-elongata_contig163.3998.1|Name=mRNA_H-elongata_contig163.3998.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1045bp MWRRQKRTKPQAKKFSEPSARRLAQAASLRCADFRAWLGKRDISSMGRKRback to top mRNA from alignment at H-elongata_contig163:2016..18085- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig163.3998.1 ID=mRNA_H-elongata_contig163.3998.1|Name=mRNA_H-elongata_contig163.3998.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=16070bp|location=Sequence derived from alignment at H-elongata_contig163:2016..18085- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig163:2016..18085- >mRNA_H-elongata_contig163.3998.1 ID=mRNA_H-elongata_contig163.3998.1|Name=mRNA_H-elongata_contig163.3998.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6270bp|location=Sequence derived from alignment at H-elongata_contig163:2016..18085- (Himanthalia elongata Himel1 dioecious)back to top |