mRNA_H-elongata_contig16295.3995.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig16295.3995.1
Unique NamemRNA_H-elongata_contig16295.3995.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: D7FV24_ECTSI (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV24_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 7.590e-49
Identity = 79/90 (87.78%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 270
            VGLRWWSNVKEDGTTEWVFESL++MSEI+S DYKLFWIGLYGTPVLW+ L +TGIMLLKFQWLVIVVIAL L+GANIYGYTKCNADAK K
Sbjct:   61 VGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVK 150
[Close]
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A6H5KM82_9PHAE (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM82_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 8.380e-45
Identity = 76/90 (84.44%), Postives = 83/90 (92.22%), Query Frame = 1 
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 270
            VGLRWWSNV  DGTTEWVFESL++MSEI+S DYKLFWIGLYGTPVLW+ L +TGIMLLKFQWLVIVVIAL L+GANIYGYTKCNAD+K K
Sbjct:  218 VGLRWWSNVTADGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADSKVK 307
[Close]
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A835Z0U0_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U0_9STRA)

HSP 1 Score: 133 bits (334), Expect = 8.820e-37
Identity = 62/90 (68.89%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 270
            VGLRWWSNVKEDGTT WVFESL+NMSEI   D KLFWIGLY  P +W+ LFI G++    QWL+IVV+A+ L+ ANI GYTKC+ DAKNK
Sbjct:  111 VGLRWWSNVKEDGTTSWVFESLENMSEIQPADSKLFWIGLYAAPAVWVALFIIGLLKFNLQWLIIVVVAILLSTANIVGYTKCSNDAKNK 200
[Close]
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A7S2V0N0_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0N0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 2.100e-36
Identity = 59/90 (65.56%), Postives = 75/90 (83.33%), Query Frame = 1 
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 270
            VGLRWW+NVKEDGTTEW FESL++M+E+SS D +LFW+G+YG P+ WL +FI  ++ L FQWL+IVV+AL LNGANI GY KC+ DA+ K
Sbjct:   70 VGLRWWNNVKEDGTTEWRFESLEDMTEVSSADSRLFWLGMYGAPLAWLVVFIVDLLKLNFQWLIIVVVALTLNGANIVGYIKCSNDARQK 159
[Close]
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A6V1M0B7_HETAK (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M0B7_HETAK)

HSP 1 Score: 124 bits (312), Expect = 1.620e-33
Identity = 55/94 (58.51%), Postives = 71/94 (75.53%), Query Frame = 1 
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNKASGI 282
            VGLRWWS+V EDG T+WVFESL+++ E+ + D +LFW+GLY TP  W  LF+ G++    QWL++VV+ALAL+GANI GYTKC  DAK K  G 
Sbjct:  104 VGLRWWSHVSEDGKTDWVFESLEDLGEVHAGDARLFWLGLYATPAAWAALFVIGLLKFNLQWLIVVVVALALSGANIIGYTKCRKDAKQKLQGF 197
[Close]
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A485KG22_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG22_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.020e-30
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 270
            VGLRWW+ + EDG+ EWVFESL++MSEI  +D K+FW GLYG PV+W+   +  ++ L  +W +I ++AL L+GAN+ GYTKC+ DAKNK
Sbjct:  114 VGLRWWNRINEDGSNEWVFESLEDMSEIDPLDAKIFWTGLYGAPVVWVLFLLIAVLKLNVEWALIAIVALTLSGANVVGYTKCSKDAKNK 203
[Close]
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A7S2C953_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C953_9STRA)

HSP 1 Score: 116 bits (290), Expect = 5.050e-30
Identity = 53/90 (58.89%), Postives = 72/90 (80.00%), Query Frame = 1 
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 270
            VGLRWW+ VKEDGT EWVFESL+NMSE+++ D ++FW+GLY    +W GL +   + L+FQWL++V IAL+++ ANI GYTKC++DAK K
Sbjct:  126 VGLRWWNYVKEDGTNEWVFESLENMSEVNANDSRVFWMGLYVPVAIWTGLLVIDTLKLQFQWLIVVFIALSMHVANIIGYTKCSSDAKAK 215
[Close]
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A662XBB3_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBB3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.410e-29
Identity = 50/90 (55.56%), Postives = 69/90 (76.67%), Query Frame = 1 
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 270
            VGLRWW+ + EDGT+EWVFES ++M+EI  +D ++FW GLYG+P LW+ L I  ++    QW +IV++A+AL+GANI GYT+C  DAK K
Sbjct:   80 VGLRWWNRINEDGTSEWVFESHEDMTEIDPLDSRVFWTGLYGSPALWMLLLIVAVLKFNVQWALIVLVAVALSGANIIGYTRCKKDAKQK 169
[Close]
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A7S1CQ60_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CQ60_9STRA)

HSP 1 Score: 112 bits (280), Expect = 5.120e-29
Identity = 48/94 (51.06%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNKASGI 282
            VGLRWW+++KEDGT EWVFES     E+ ++D+++FW G++G   +W  L +  I+   FQW+++V++ALAL+GANIYGY KCN DAK + +G 
Sbjct:   97 VGLRWWNHIKEDGTNEWVFESHKGTREVDALDWRIFWGGIFGGFAVWAFLLVIAIIKFNFQWMLLVIVALALSGANIYGYLKCNTDAKKQVTGF 190
[Close]
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Match: A0A5D6XTW7_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTW7_9STRA)

HSP 1 Score: 112 bits (280), Expect = 6.700e-29
Identity = 49/90 (54.44%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGLFITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNK 270
            VGLRWW+ V +DG++EWVFES ++M+E+  +D ++FW+GLYG P LW  L +  ++ L  QW +IV +AL L+GANI GYTKC  DAK K
Sbjct:  112 VGLRWWNRVNDDGSSEWVFESHEDMTEVDPLDAQVFWLGLYGAPALWALLLVVAVLKLNVQWALIVAVALVLSGANIVGYTKCKTDAKQK 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig16295.3995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV24_ECTSI7.590e-4987.78Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A6H5KM82_9PHAE8.380e-4584.44Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A835Z0U0_9STRA8.820e-3768.89Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A7S2V0N0_9STRA2.100e-3665.56Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A6V1M0B7_HETAK1.620e-3358.51Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A485KG22_9STRA2.020e-3055.56Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A7S2C953_9STRA5.050e-3058.89Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A662XBB3_9STRA1.410e-2955.56Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A7S1CQ60_9STRA5.120e-2951.06Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A5D6XTW7_9STRA6.700e-2954.44Golgi apparatus membrane protein TVP23 homolog n=1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig16295contigH-elongata_contig16295:976..1694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue4.3e-38
Seed eggNOG ortholog2880.D7FV24
Preferred nameTVP23A
GOsGO:0000139,GO:0000902,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0006810,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0009306,GO:0009653,GO:0009826,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016192,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031901,GO:0031982,GO:0031984,GO:0032502,GO:0032588,GO:0032940,GO:0032989,GO:0033036,GO:0040007,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0048589,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0060560,GO:0071702,GO:0071705,GO:0071840,GO:0097708,GO:0098588,GO:0098791,GO:0098805
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG3195@1,KOG3195@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionProtein of unknown function DUF846, eukaryotic
Ec32 orthologEc-14_003890.1
Exons2
Model size288
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929953.1938019-CDS-H-elongata_contig16295:975..11581622929953.1938019-CDS-H-elongata_contig16295:975..1158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16295 976..1158 +
1691679221.3618963-CDS-H-elongata_contig16295:975..11581691679221.3618963-CDS-H-elongata_contig16295:975..1158Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16295 976..1158 +
1622929953.21678-CDS-H-elongata_contig16295:1589..16941622929953.21678-CDS-H-elongata_contig16295:1589..1694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16295 1590..1694 +
1691679221.3806286-CDS-H-elongata_contig16295:1589..16941691679221.3806286-CDS-H-elongata_contig16295:1589..1694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig16295 1590..1694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig16295.3995.1prot_H-elongata_contig16295.3995.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig16295 976..1694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig16295.3995.1

>prot_H-elongata_contig16295.3995.1 ID=prot_H-elongata_contig16295.3995.1|Name=mRNA_H-elongata_contig16295.3995.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
VGLRWWSNVKEDGTTEWVFESLDNMSEISSVDYKLFWIGLYGTPVLWLGL
FITGIMLLKFQWLVIVVIALALNGANIYGYTKCNADAKNKASGICA
back to top

mRNA from alignment at H-elongata_contig16295:976..1694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig16295.3995.1 ID=mRNA_H-elongata_contig16295.3995.1|Name=mRNA_H-elongata_contig16295.3995.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=719bp|location=Sequence derived from alignment at H-elongata_contig16295:976..1694+ (Himanthalia elongata Himel1 dioecious)
GTGGGGCTTCGCTGGTGGAGCAATGTCAAGGAGGACGGCACGACTGAGTG
GGTTTTCGAGTCTTTGGATAATATGTCCGAAATTAGCAGTGTCGACTACA
AGCTCTTCTGGATCGGCCTATATGGCACACCCGTATTGTGGCTGGGCCTC
TTCATCACGGGCATCATGTTGCTCAAGTTCCAGGTAGAGGGGGTACAGGG
AACAAAGCCATGTGGGGGGAGGGTAGAGGTGGTACATGCGTTTTTGAAGA
AACCTTATCGCAGTCTCAAGCAAGCCCCGATCGTTTCAAGTCATGTCCGA
TCTTGAGAGTGGCTATGGAACAAGCGTTGGGAGTATGAAATATATCGTGG
GGGAGCGACGGTGAGTGTTTCTCTTGAGCTAGTGGAATTATGATACATAG
TGTATAACATTATGTTTTGGGTAGTCGAACGCCCTCTGGTATGATATCCG
CCCTTGCAACGCGTACCGGCTGTGCCGTTCGTGACATTGCGTGCCTTACC
CACACTCCAAGCGATTCCCGATAGCTCCCTCTACTTCGTGCGACTCACCG
TAATTGCATTTCCTGGGGCGCACGCACTCAAGTCACTCGTTCGTTCTCCT
CTGTTTTCCTTTAGTGGCTGGTGATTGTCGTGATCGCGCTGGCTCTGAAC
GGGGCGAACATATATGGCTACACGAAGTGCAACGCAGACGCGAAGAATAA
GGCAAGCGGGATTTGTGCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig16295:976..1694+

>mRNA_H-elongata_contig16295.3995.1 ID=mRNA_H-elongata_contig16295.3995.1|Name=mRNA_H-elongata_contig16295.3995.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig16295:976..1694+ (Himanthalia elongata Himel1 dioecious)
GTGGGGCTTCGCTGGTGGAGCAATGTCAAGGAGGACGGCACGACTGAGTG
GGTTTTCGAGTCTTTGGATAATATGTCCGAAATTAGCAGTGTCGACTACA
AGCTCTTCTGGATCGGCCTATATGGCACACCCGTATTGTGGCTGGGCCTC
TTCATCACGGGCATCATGTTGCTCAAGTTCCAGGTGGGGCTTCGCTGGTG
GAGCAATGTCAAGGAGGACGGCACGACTGAGTGGGTTTTCGAGTCTTTGG
ATAATATGTCCGAAATTAGCAGTGTCGACTACAAGCTCTTCTGGATCGGC
CTATATGGCACACCCGTATTGTGGCTGGGCCTCTTCATCACGGGCATCAT
GTTGCTCAAGTTCCAGTGGCTGGTGATTGTCGTGATCGCGCTGGCTCTGA
ACGGGGCGAACATATATGGCTACACGAAGTGCAACGCAGACGCGAAGAAT
AAGGCAAGCGGGATTTGTGCTTGGCTGGTGATTGTCGTGATCGCGCTGGC
TCTGAACGGGGCGAACATATATGGCTACACGAAGTGCAACGCAGACGCGA
AGAATAAGGCAAGCGGGATTTGTGCT
back to top