mRNA_H-elongata_contig1629.3993.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1629.3993.1
Unique NamemRNA_H-elongata_contig1629.3993.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 238 bits (608), Expect = 1.380e-70
Identity = 134/261 (51.34%), Postives = 170/261 (65.13%), Query Frame = 1
Query:    1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC----NRPK--TKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND----FSLCTKCTHCSSESNPKQSMDMNTDTSKDEKPAIDFTGSGNDFDEGFMF-TATAVTSKKPAPSAKVVTLLMDSGASGIFLDNALIP 750
            +EEL N PM PG+NPDDY NQKHLLR +++KMGE +SDR FKDI V GF+DEYKDV++M++RD T ++  M STMR++FLDEQSR   K  IAGR   MA    T  S II  +C E G+ ++NC    NR K  TKPAGA+KWCS H+TT+HSDEEC +QG  RP+   D    F+ C+ CTHCSS S          D S +E   +DFT   + FD GFMF T + ++ +  A S+  V L++DS AS    DN LIP
Sbjct:  156 MEELENNPMNPGENPDDYFNQKHLLRTQLDKMGEPISDRRFKDICVQGFSDEYKDVKLMVFRDPTFNVLDMLSTMRNIFLDEQSRKGWKGRIAGRGFAMA----TTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTKDSNKVFTACSNCTHCSSASKK--------DDSNNEVAVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVRLVVDSEASETMFDNRLIP 404          
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: D7G6Q1_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Q1_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 3.470e-68
Identity = 130/268 (48.51%), Postives = 168/268 (62.69%), Query Frame = 1
Query:    1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-------NRPKTKPAGASKWCSVHSTTTHSDEECLKQGASRP-----KKENDFSLCTKCTHCSSESNPKQSMDMNTDTSKDEKPAIDFTGSGNDFDEGFMFTATAVTSKKPAPSAKVVTLLMDSGASGIFLDNALIPGLEDEM 768
            +E+L NT MEPGQNPDDY N KHLLR +VEKMGEK+SDR+FKD+ VTGFT EYK+V+M+M+RD   ++  M +TM HM LDEQSR   K  IAGR   M   TA++      F C E G+ ++NC        + KTKPAGA+KWC  H TT +SDEEC  QGA RP       +  FS C  C H SS S+ K+       +S   K AID +  G++ DEGFM+ AT  T  +   +A+ VTLL++ GA+    D+ LIP L+D +
Sbjct:    1 MEKLDNTSMEPGQNPDDYFNHKHLLRHKVEKMGEKISDRYFKDMCVTGFTHEYKNVKMIMHRDPNFNVNHMQTTMHHMALDEQSRKGSKGGIAGRGFPMVT-TASEQE--TCFGCGEKGHIRRNCLQRRGKGRQRKTKPAGATKWCCFHFTTKNSDEECYGQGAKRPITDQISTDKAFSACAHCAHFSSTSDRKELTTAKEASST--KAAIDSSTDGDESDEGFMY-ATTRTGMEVEANAEGVTLLVEIGATETMRDDRLIPHLKDNV 262          
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5KJB9_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB9_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 4.140e-68
Identity = 132/272 (48.53%), Postives = 176/272 (64.71%), Query Frame = 1
Query:    1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSM----DMNTDTSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K  IAGR   MA  T    S  I F C E G+ ++NC NR        KTKPAGA+KWCSVH+TTTHSDEEC  QGA RP++    FS CT C HCS++S    +     +  T+T K EK  IDF+   + F  GFM+ AT    + +    +A   + L+DSGAS    D+ LIP   LE+E
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTETPTETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPNGRLEEE 403          
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 235 bits (600), Expect = 3.170e-67
Identity = 134/272 (49.26%), Postives = 176/272 (64.71%), Query Frame = 1
Query:    1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSMDMNTD----TSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K  IAGR   MA  T    S  I F C E G+ ++NC NR        KTKPAGA+KWCSVH+TTTHSDEEC  QGA RP++    FS CT C HCS++S   Q+    T+    T K EK  IDF+   + F  GFM+ AT    + +    +A   + L+DSGAS    DN LIP   LE+E
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403          
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 5.210e-67
Identity = 133/272 (48.90%), Postives = 176/272 (64.71%), Query Frame = 1
Query:    1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSMDMNTD----TSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K  IAGR   MA  T    S  I F C E G+ ++NC NR        KTKPAGA+KWCSVH+TTTHSDEEC  QGA RP++    FS CT C HCS++S   Q+    T+    T K E+  IDF+   + F  GFM+ AT    + +    +A   + L+DSGAS    DN LIP   LE+E
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403          
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5JUN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN9_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 5.610e-67
Identity = 133/272 (48.90%), Postives = 175/272 (64.34%), Query Frame = 1
Query:    1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSMDMNTD----TSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K  IAGR   MA  T    S  I F C E G+ ++NC NR        KTKPAGA+KWCSVH+TTTHSDEEC  QGA RP++    FS CT C HCS++S    +    T+    T K EK  IDF+   + F  GFM+ AT    + +    +A   + L+DSGAS    DN LIP   LE+E
Sbjct:  155 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 422          
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 7.990e-67
Identity = 133/272 (48.90%), Postives = 175/272 (64.34%), Query Frame = 1
Query:    1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSMDMNTD----TSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K  IAGR   MA  T    S  I F C E G+ ++NC NR        KTKPAGA+KWCSVH+TTTHSDEEC  QGA RP++    FS CT C HCS++S    +    T+    T K EK  IDF+   + F  GFM+ AT    + +    +A   + L+DSGAS    DN LIP   LE+E
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDTHAKPTTTEIPKETEKTEKAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDNRLIPNGRLEEE 403          
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5KW66_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW66_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 1.750e-66
Identity = 122/224 (54.46%), Postives = 154/224 (68.75%), Query Frame = 1
Query:    1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNCN------RPKTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND----FSLCTKCTHCSSESNPKQSMDMNTDTSKDEKPAIDFTGSGNDFDEGFMF 642
            +EEL+NTPMEP QNPDDY NQKHLLR + EKMGE +SD +F D  VTGFT+EYKDV+M+MYRD   ++++M +TMRHMFLDEQSRN  K  IAGR   M A T+ +P+    F+C E G+  +NC+      + KTKPAGA+KWCSVH TT HSDEEC +QGA+RPKK ++     S C  CTHC S SN K  + M    +   +  IDF+  G   +EGFM+
Sbjct:  116 MEELINTPMEPRQNPDDYFNQKHLLRHKAEKMGETISDCYFNDECVTGFTNEYKDVKMIMYRDPDFNVDKMQTTMRHMFLDEQSRNGPKGSIAGRGFAMTATTSEEPT---CFDCGEKGHIWRNCSEKRGKGKKKTKPAGAAKWCSVHFTTRHSDEECFEQGATRPKKSSNTGKALSACASCTHCFSTSN-KTELAMTKQEASSTQAEIDFSAEGES-EEGFMY 334          
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5K3T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3T5_9PHAE)

HSP 1 Score: 232 bits (591), Expect = 2.480e-66
Identity = 132/272 (48.53%), Postives = 176/272 (64.71%), Query Frame = 1
Query:    1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC-NRP-------KTKPAGASKWCSVHSTTTHSDEECLKQGASRPKKEND-FSLCTKCTHCSSESNPKQSMDMNTD----TSKDEKPAIDFTGSGNDFDEGFMFTATAV--TSKKPAPSAKVVTLLMDSGASGIFLDNALIPG--LEDE 765
            +++L  T MEPG+NPDD+ N+KH LR ++EKMGE +SDR FKDI V GF+++YKD++MM++RD + D++QM +TMR++FLDEQ R R K  IAGR   MA  T    S  I F C E G+ ++NC NR        KTKPAGA+KWCSVH+TTTHSDEEC  QGA RP++    FS CT C HCS++S   Q+    T+    T K E+  IDF+   + F  GFM+ AT    + +    +A   + L+DSGAS    D+ LIP   LE+E
Sbjct:  136 LDDLERTVMEPGENPDDFFNKKHRLRSQLEKMGETISDRRFKDICVQGFSEDYKDIKMMVFRDPSFDVQQMQATMRNIFLDEQMRKRTKGQIAGRGFAMATKT----SGPICFECNEPGHVRRNCPNRQREGHRAKKTKPAGATKWCSVHNTTTHSDEECYNQGAKRPERTGKAFSACTHCVHCSTQSRDIQAKPTTTEIPKETEKTEQAEIDFSYDEDAFKGGFMYHATCSKGSGRTFTTTATGTSALVDSGASETMFDDRLIPNGRLEEE 403          
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Match: A0A6H5JZ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ53_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 4.620e-66
Identity = 128/263 (48.67%), Postives = 168/263 (63.88%), Query Frame = 1
Query:    1 VEELVNTPMEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRMMMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPSHIILFNCKEGGNTKKNC----NRPK--TKPAGASKWCSVHSTTTHSDEECLKQ--GASRPKKEND----FSLCTKCTHCSSESNPKQSMDMNTDTSKDEKPAIDFTGSGNDFDEGFMF-TATAVTSKKPAPSAKVVTLLMDSGASGIFLDNALIP 750
            +EEL N PM PG+NPDDY NQKH L ++++KMGE +SDR FKDI V GF+DEY+DV++M++RD T ++  M STMR+++LDEQSR   K  IAGR   MA    T  S II  +C E G+ ++NC    NR K  TKPAGA+KWCS H+TT+HSDEEC +Q  G   P+   D    F+ C+ CTHCSS          N   S +E   +DFT   + FD GFMF T + ++ +  A S+  V LL+D+GAS    DN L+P
Sbjct:    1 MEELENNPMNPGENPDDYFNQKHPLCVQLDKMGEPISDRRFKDICVQGFSDEYEDVKLMLFRDPTFNVLDMQSTMRNIYLDEQSRKGWKGRIAGRGFAMA----TTASDIICHSCYEPGHIRRNCPKIKNRAKKKTKPAGATKWCSKHNTTSHSDEECYQQXQGGKCPEDTKDSSKAFTPCSDCTHCSST--------CNKHDSNNEVTVVDFTRDEDAFDSGFMFATCSRISGRNFAASSTGVGLLVDTGASATMFDNRLMP 251          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1629.3993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L580_9PHAE1.380e-7051.34CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G6Q1_ECTSI3.470e-6848.51CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KJB9_9PHAE4.140e-6848.53Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5KHG5_9PHAE3.170e-6749.26Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5L1Z9_9PHAE5.210e-6748.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUN9_9PHAE5.610e-6748.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTQ0_9PHAE7.990e-6748.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KW66_9PHAE1.750e-6654.46CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K3T5_9PHAE2.480e-6648.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ53_9PHAE4.620e-6648.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1629contigH-elongata_contig1629:10239..11006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size768
Cds size744
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929952.9881861-CDS-H-elongata_contig1629:10238..109821622929952.9881861-CDS-H-elongata_contig1629:10238..10982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1629 10239..10982 -
1691679221.2929564-CDS-H-elongata_contig1629:10238..109821691679221.2929564-CDS-H-elongata_contig1629:10238..10982Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1629 10239..10982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929953.003559-UTR-H-elongata_contig1629:10982..110061622929953.003559-UTR-H-elongata_contig1629:10982..11006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1629 10983..11006 -
1691679221.3015862-UTR-H-elongata_contig1629:10982..110061691679221.3015862-UTR-H-elongata_contig1629:10982..11006Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1629 10983..11006 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1629.3993.1prot_H-elongata_contig1629.3993.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1629 10239..10982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1629.3993.1

>prot_H-elongata_contig1629.3993.1 ID=prot_H-elongata_contig1629.3993.1|Name=mRNA_H-elongata_contig1629.3993.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=248bp
MEPGQNPDDYINQKHLLRLRVEKMGEKVSDRWFKDIIVTGFTDEYKDVRM
MMYRDSTLDIEQMTSTMRHMFLDEQSRNRMKVPIAGRSIGMAADTATDPS
HIILFNCKEGGNTKKNCNRPKTKPAGASKWCSVHSTTTHSDEECLKQGAS
RPKKENDFSLCTKCTHCSSESNPKQSMDMNTDTSKDEKPAIDFTGSGNDF
DEGFMFTATAVTSKKPAPSAKVVTLLMDSGASGIFLDNALIPGLEDEM
back to top

mRNA from alignment at H-elongata_contig1629:10239..11006-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1629.3993.1 ID=mRNA_H-elongata_contig1629.3993.1|Name=mRNA_H-elongata_contig1629.3993.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=768bp|location=Sequence derived from alignment at H-elongata_contig1629:10239..11006- (Himanthalia elongata Himel1 dioecious)
GTGGAGGAGCTCGTGAACACGCCAATGGAACCTGGACAGAACCCCGACGA CTACATAAACCAGAAGCACCTTCTCCGTCTTAGAGTGGAGAAAATGGGAG AGAAGGTGTCTGACCGGTGGTTTAAGGACATCATCGTCACGGGTTTCACC GATGAGTACAAGGATGTGAGGATGATGATGTACCGCGACTCTACCCTCGA CATTGAACAGATGACGTCCACCATGCGACACATGTTTCTCGACGAGCAGT CACGCAACCGCATGAAAGTTCCAATCGCCGGCCGCAGTATTGGTATGGCT GCCGACACAGCAACGGATCCATCACACATCATTCTCTTCAACTGCAAGGA GGGTGGGAACACCAAAAAGAACTGCAACAGGCCTAAAACCAAGCCAGCAG GAGCATCGAAGTGGTGTTCAGTTCACAGCACCACTACACACAGTGACGAG GAGTGCTTAAAACAAGGAGCATCACGGCCGAAGAAAGAAAACGACTTTTC GTTGTGCACGAAATGCACACACTGCTCATCAGAGAGCAACCCGAAGCAAT CTATGGATATGAATACAGACACCTCGAAGGACGAAAAGCCGGCCATTGAC TTCACTGGCAGTGGCAACGATTTTGACGAAGGGTTCATGTTCACTGCTAC GGCTGTCACCTCGAAAAAGCCCGCTCCAAGCGCAAAGGTTGTAACTCTGC TTATGGATAGTGGTGCGTCCGGGATATTCCTTGACAACGCACTCATCCCT GGATTGGAGGACGAAATG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig1629:10239..11006-

>mRNA_H-elongata_contig1629.3993.1 ID=mRNA_H-elongata_contig1629.3993.1|Name=mRNA_H-elongata_contig1629.3993.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1488bp|location=Sequence derived from alignment at H-elongata_contig1629:10239..11006- (Himanthalia elongata Himel1 dioecious)
ATGGAACCTGGACAGAACCCCGACGACTACATAAACCAGAAGCACCTTCT
CCGTCTTAGAGTGGAGAAAATGGGAGAGAAGGTGTCTGACCGGTGGTTTA
AGGACATCATCGTCACGGGTTTCACCGATGAGTACAAGGATGTGAGGATG
ATGATGTACCGCGACTCTACCCTCGACATTGAACAGATGACGTCCACCAT
GCGACACATGTTTCTCGACGAGCAGTCACGCAACCGCATGAAAGTTCCAA
TCGCCGGCCGCAGTATTGGTATGGCTGCCGACACAGCAACGGATCCATCA
CACATCATTCTCTTCAACTGCAAGGAGGGTGGGAACACCAAAAAGAACTG
CAACAGGCCTAAAACCAAGCCAGCAGGAGCATCGAAGTGGTGTTCAGTTC
ACAGCACCACTACACACAGTGACGAGGAGTGCTTAAAACAAGGAGCATCA
CGGCCGAAGAAAGAAAACGACTTTTCGTTGTGCACGAAATGCACACACTG
CTCATCAGAGAGCAACCCGAAGCAATCTATGGATATGAATACAGACACCT
CGAAGGACGAAAAGCCGGCCATTGACTTCACTGGCAGTGGCAACGATTTT
GACGAAGGGTTCATGTTCACTGCTACGGCTGTCACCTCGAAAAAGCCCGC
TCCAAGCGCAAAGGTTGTAACTCTGCTTATGGATAGTGGTGCGTCCGGGA
TATTCCTTGACAACGCACTCATCCCTGGATTGGAGGACGAAATGATGGAA
CCTGGACAGAACCCCGACGACTACATAAACCAGAAGCACCTTCTCCGTCT
TAGAGTGGAGAAAATGGGAGAGAAGGTGTCTGACCGGTGGTTTAAGGACA
TCATCGTCACGGGTTTCACCGATGAGTACAAGGATGTGAGGATGATGATG
TACCGCGACTCTACCCTCGACATTGAACAGATGACGTCCACCATGCGACA
CATGTTTCTCGACGAGCAGTCACGCAACCGCATGAAAGTTCCAATCGCCG
GCCGCAGTATTGGTATGGCTGCCGACACAGCAACGGATCCATCACACATC
ATTCTCTTCAACTGCAAGGAGGGTGGGAACACCAAAAAGAACTGCAACAG
GCCTAAAACCAAGCCAGCAGGAGCATCGAAGTGGTGTTCAGTTCACAGCA
CCACTACACACAGTGACGAGGAGTGCTTAAAACAAGGAGCATCACGGCCG
AAGAAAGAAAACGACTTTTCGTTGTGCACGAAATGCACACACTGCTCATC
AGAGAGCAACCCGAAGCAATCTATGGATATGAATACAGACACCTCGAAGG
ACGAAAAGCCGGCCATTGACTTCACTGGCAGTGGCAACGATTTTGACGAA
GGGTTCATGTTCACTGCTACGGCTGTCACCTCGAAAAAGCCCGCTCCAAG
CGCAAAGGTTGTAACTCTGCTTATGGATAGTGGTGCGTCCGGGATATTCC
TTGACAACGCACTCATCCCTGGATTGGAGGACGAAATG
back to top