mRNA_H-elongata_contig162884.3990.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162884.3990.1
Unique NamemRNA_H-elongata_contig162884.3990.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig162884.3990.1 vs. uniprot
Match: A0A6H5K8B0_9PHAE (HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8B0_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.500e-24
Identity = 54/82 (65.85%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    4 AERGPNYYQVLGLRRGCSAIEIKRAYRQLSLELHPDKNPSQDAADRFSKMTAALEVCSIPERRY------PRRTNGYKPFGE 231
            AERGPN+YQ+LG+RRG SAIEIKRAYRQLSLELHPDKNPSQDAAD FSK+ AA EV    E+R       P       PF E
Sbjct:   83 AERGPNFYQLLGVRRGSSAIEIKRAYRQLSLELHPDKNPSQDAADMFSKIQAAQEVLMDSEKREIYDKLGPEAATSKHPFNE 164          
BLAST of mRNA_H-elongata_contig162884.3990.1 vs. uniprot
Match: D7G2Q7_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q7_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 4.060e-24
Identity = 53/82 (64.63%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    4 AERGPNYYQVLGLRRGCSAIEIKRAYRQLSLELHPDKNPSQDAADRFSKMTAALEVCSIPERRY------PRRTNGYKPFGE 231
            AERGPN+YQ+LG+RRG SAIEIKRAYRQLSLELHPDKNPSQDAAD FSK+ AA E+    E+R       P       PF E
Sbjct:   60 AERGPNFYQLLGVRRGSSAIEIKRAYRQLSLELHPDKNPSQDAADMFSKIQAAQEILMDSEKREIYDKLGPEAATSKHPFNE 141          
BLAST of mRNA_H-elongata_contig162884.3990.1 vs. uniprot
Match: D7G5P1_ECTSI (Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P1_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 3.700e-15
Identity = 40/69 (57.97%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   25 YQVLGLRRGCSAIEIKRAYRQLSLELHPDKNPSQDAADRFSKMTAALEVCSIPERRYPRRTNGYKPFGE 231
            Y+VLGL RG S+ EIK+AYRQLSL+ HPDKNPS+DAA RF+++ +A EV S  E+R     + Y  FGE
Sbjct:   61 YEVLGLGRGASSSEIKKAYRQLSLKYHPDKNPSEDAATRFAEVASAYEVLSDEEKR-----DTYDRFGE 124          
BLAST of mRNA_H-elongata_contig162884.3990.1 vs. uniprot
Match: A0A7R9WWC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWC3_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 4.520e-15
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 MAERGPNYYQVLGLRRGCSAIEIKRAYRQLSLELHPDKNPSQDAADRFSKMTAALEVCSIPERRYPRRTNGYKPFGE 231
            M +RGPNYY +L + R  + +EIKRAY++LSL+LHPDKNPS DA+D+F ++  A +V    E R     + Y  FG+
Sbjct:  100 MQQRGPNYYSMLSVTRDSNPLEIKRAYKKLSLQLHPDKNPSPDASDQFDRVKQAYDVLMDMELR-----DVYNKFGK 171          
BLAST of mRNA_H-elongata_contig162884.3990.1 vs. uniprot
Match: A0A7S2V6D8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6D8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 7.070e-15
Identity = 36/75 (48.00%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    7 ERGPNYYQVLGLRRGCSAIEIKRAYRQLSLELHPDKNPSQDAADRFSKMTAALEVCSIPERRYPRRTNGYKPFGE 231
            +RGPNYYQVLG+ R  + +EIKRAY+++++ELHPDKNPS +A + F+++ +A +V    E R       Y  FGE
Sbjct:   57 DRGPNYYQVLGVNRASNPLEIKRAYKKMAVELHPDKNPSPNAEEEFNRLKSAYDVLMDMELR-----EVYNKFGE 126          
BLAST of mRNA_H-elongata_contig162884.3990.1 vs. uniprot
Match: F0Y4T8_AURAN (J domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4T8_AURAN)

HSP 1 Score: 71.2 bits (173), Expect = 1.110e-14
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 1
Query:   13 GPNYYQVLGLRRGCSAIEIKRAYRQLSLELHPDKNPSQDAADRFSKMTAALEVCSIPERRYPRRTNGYKPFGE 231
            GPN+YQ+L + RG SA++IKRAY+++SLELHPDKNPS  A D F+ +    +V    E R       Y  FGE
Sbjct:    1 GPNFYQMLDVTRGSSAVDIKRAYKRMSLELHPDKNPSPTAIDDFAALKNGYDVLMDMETR-----EIYNRFGE 68          
BLAST of mRNA_H-elongata_contig162884.3990.1 vs. uniprot
Match: A0A0B2A4C6_9MICO (Chaperone protein DnaJ n=1 Tax=Microbacterium mangrovi TaxID=1348253 RepID=A0A0B2A4C6_9MICO)

HSP 1 Score: 75.9 bits (185), Expect = 2.210e-14
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   19 NYYQVLGLRRGCSAIEIKRAYRQLSLELHPDKNPSQDAADRFSKMTAALEVCSIPERRYPRRTNGYKPFG 228
            ++YQVLG+ R  S  EIK+AYR+L+ ELHPD NP +DAA+RF ++T A +V S PE+R      G  PFG
Sbjct:    5 DHYQVLGVSREASPEEIKKAYRRLARELHPDVNPGEDAAERFKQVTHAYDVLSDPEQRQRYDMGGDNPFG 74          
BLAST of mRNA_H-elongata_contig162884.3990.1 vs. uniprot
Match: A0A836C9F3_9STRA (Heat shock protein 40 like protein/ DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9F3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.730e-14
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 1
Query:    7 ERGPNYYQVLGLRRGCSAIEIKRAYRQLSLELHPDKNPSQDAADRFSKMTAALEVCSIPE 186
            ERGPN+YQ+LG+ R  + +EIK+AY++ SLELHPDKNPS +A D+F++M  A EV    E
Sbjct:   56 ERGPNHYQLLGVGREATPLEIKKAYKRASLELHPDKNPSPEAVDQFAEMKDAYEVLMDQE 115          
BLAST of mRNA_H-elongata_contig162884.3990.1 vs. uniprot
Match: A0A3P7M5E1_DIBLA (J domain-containing protein n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7M5E1_DIBLA)

HSP 1 Score: 72.4 bits (176), Expect = 4.040e-14
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 AERGPNYYQVLGLRRGCSAIEIKRAYRQLSLELHPDKNPSQDAADRFSKMTAALEVCSIPERRYPRRTNGYKPF 225
            A + P+YY+VLGLRRGCS  EIK AYR L+   HPDKN S +A+++F ++  A EV S  +RR    + G++ +
Sbjct:   19 AGKAPDYYEVLGLRRGCSTQEIKSAYRNLAKLYHPDKNKSPEASEKFRQIAEAYEVLSDEKRRRVYDSMGHEQY 92          
BLAST of mRNA_H-elongata_contig162884.3990.1 vs. uniprot
Match: UPI0015F56853 (DnaJ domain-containing protein n=1 Tax=Curtobacterium sp. ME12 TaxID=2744253 RepID=UPI0015F56853)

HSP 1 Score: 70.9 bits (172), Expect = 4.830e-14
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = 1
Query:   19 NYYQVLGLRRGCSAIEIKRAYRQLSLELHPDKNPSQDAADRFSKMTAALEVCSIPE--RRYPRRTNGYKPFG 228
            ++Y VLG++R  S  +IK+AYR+L+ ELHPD NP+ DAA+RF  +T A +V S PE  RRY        PFG
Sbjct:    3 DHYDVLGVQRDASDADIKKAYRRLARELHPDVNPAPDAAERFKDVTHAYDVLSDPEQRRRYDAGPQADSPFG 74          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162884.3990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8B0_9PHAE1.500e-2465.85HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
D7G2Q7_ECTSI4.060e-2464.63Heat shock protein 40 like protein/ DnaJ domain co... [more]
D7G5P1_ECTSI3.700e-1557.97Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7R9WWC3_9STRA4.520e-1548.05Hypothetical protein (Fragment) n=1 Tax=Craspedost... [more]
A0A7S2V6D8_9STRA7.070e-1548.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
F0Y4T8_AURAN1.110e-1449.32J domain-containing protein (Fragment) n=1 Tax=Aur... [more]
A0A0B2A4C6_9MICO2.210e-1452.86Chaperone protein DnaJ n=1 Tax=Microbacterium mang... [more]
A0A836C9F3_9STRA2.730e-1456.67Heat shock protein 40 like protein/ DnaJ domain-co... [more]
A0A3P7M5E1_DIBLA4.040e-1447.30J domain-containing protein n=1 Tax=Dibothriocepha... [more]
UPI0015F568534.830e-1450.00DnaJ domain-containing protein n=1 Tax=Curtobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162884contigH-elongata_contig162884:1084..1323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue5.7e-20
Seed eggNOG ortholog2880.D7G2Q7
EggNOG free text desc.heat shock protein binding
EggNOG OGsCOG0484@1,KOG0712@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929952.8599045-CDS-H-elongata_contig162884:1083..13231622929952.8599045-CDS-H-elongata_contig162884:1083..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162884 1084..1323 +
1691679221.25217-CDS-H-elongata_contig162884:1083..13231691679221.25217-CDS-H-elongata_contig162884:1083..1323Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162884 1084..1323 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162884.3990.1prot_H-elongata_contig162884.3990.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162884 1084..1323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162884.3990.1

>prot_H-elongata_contig162884.3990.1 ID=prot_H-elongata_contig162884.3990.1|Name=mRNA_H-elongata_contig162884.3990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MAERGPNYYQVLGLRRGCSAIEIKRAYRQLSLELHPDKNPSQDAADRFSK
MTAALEVCSIPERRYPRRTNGYKPFGERMQ
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mRNA from alignment at H-elongata_contig162884:1084..1323+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162884.3990.1 ID=mRNA_H-elongata_contig162884.3990.1|Name=mRNA_H-elongata_contig162884.3990.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig162884:1084..1323+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGAGCGGGGGCCTAACTATTACCAGGTGCTTGGGTTGCGGCGAGG ATGCAGTGCGATCGAGATCAAGCGAGCGTACAGGCAGCTCTCGCTCGAGC TACATCCCGATAAAAATCCCTCTCAAGACGCAGCCGATCGCTTCTCGAAG ATGACCGCCGCTCTTGAGGTGTGTTCCATACCGGAACGTCGGTATCCTCG ACGTACGAATGGCTACAAGCCATTTGGGGAGAGAATGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig162884:1084..1323+

>mRNA_H-elongata_contig162884.3990.1 ID=mRNA_H-elongata_contig162884.3990.1|Name=mRNA_H-elongata_contig162884.3990.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig162884:1084..1323+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGAGCGGGGGCCTAACTATTACCAGGTGCTTGGGTTGCGGCGAGG
ATGCAGTGCGATCGAGATCAAGCGAGCGTACAGGCAGCTCTCGCTCGAGC
TACATCCCGATAAAAATCCCTCTCAAGACGCAGCCGATCGCTTCTCGAAG
ATGACCGCCGCTCTTGAGGTGTGTTCCATACCGGAACGTCGGTATCCTCG
ACGTACGAATGGCTACAAGCCATTTGGGGAGAGAATGCAAATGGCGGAGC
GGGGGCCTAACTATTACCAGGTGCTTGGGTTGCGGCGAGGATGCAGTGCG
ATCGAGATCAAGCGAGCGTACAGGCAGCTCTCGCTCGAGCTACATCCCGA
TAAAAATCCCTCTCAAGACGCAGCCGATCGCTTCTCGAAGATGACCGCCG
CTCTTGAGGTGTGTTCCATACCGGAACGTCGGTATCCTCGACGTACGAAT
GGCTACAAGCCATTTGGGGAGAGAATGCAA
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