mRNA_H-elongata_contig162841.3988.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162841.3988.1
Unique NamemRNA_H-elongata_contig162841.3988.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig162841.3988.1 vs. uniprot
Match: D8LTW0_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW0_ECTSI)

HSP 1 Score: 243 bits (619), Expect = 8.630e-77
Identity = 115/127 (90.55%), Postives = 119/127 (93.70%), Query Frame = 1
Query:    1 GGFHPSTAAFFFGCVVLPLQYLHHMSVAYRDLKPENLLLAQDGYLKVIDFGFAKRIPFKKDNVVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFSDPRQAEIFKKAIRSD 381
            GGF  S A+FF GCVVLPLQYLH MSVAYRDLKPENLLL QDGYLKVIDFGFAKRIPFKKD  +QTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPF+DPRQAEIFKKAIRS+
Sbjct:  183 GGFSLSVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDTTLQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSE 309          
BLAST of mRNA_H-elongata_contig162841.3988.1 vs. uniprot
Match: A0A6H5JZB9_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZB9_9PHAE)

HSP 1 Score: 246 bits (628), Expect = 5.430e-74
Identity = 117/127 (92.13%), Postives = 120/127 (94.49%), Query Frame = 1
Query:    1 GGFHPSTAAFFFGCVVLPLQYLHHMSVAYRDLKPENLLLAQDGYLKVIDFGFAKRIPFKKDNVVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFSDPRQAEIFKKAIRSD 381
            GGF  S A+FF GCVVLPLQYLH MSVAYRDLKPENLLL QDGYLKVIDFGFAKRIPFKKDN VQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPF+DPRQAEIFKKAIRS+
Sbjct:  750 GGFSLSVASFFCGCVVLPLQYLHQMSVAYRDLKPENLLLGQDGYLKVIDFGFAKRIPFKKDNTVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFTDPRQAEIFKKAIRSE 876          
BLAST of mRNA_H-elongata_contig162841.3988.1 vs. uniprot
Match: A0A835YV03_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV03_9STRA)

HSP 1 Score: 228 bits (580), Expect = 3.210e-68
Identity = 108/127 (85.04%), Postives = 117/127 (92.13%), Query Frame = 1
Query:    1 GGFHPSTAAFFFGCVVLPLQYLHHMSVAYRDLKPENLLLAQDGYLKVIDFGFAKRIPFKKDNVVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFSDPRQAEIFKKAIRSD 381
            GGF P+TA F+ G VVL LQYLH M+VAYRDLKPENLL+AQDGYLK+IDFGFAKRIPFKK   +QTKSFTLCGTPDYLAPELVLSRGHDK+VDYWALGCF+YELL GRTPF+DPRQAEIFKKAIRSD
Sbjct:  535 GGFQPATARFYGGSVVLCLQYLHKMNVAYRDLKPENLLVAQDGYLKMIDFGFAKRIPFKKGATMQTKSFTLCGTPDYLAPELVLSRGHDKSVDYWALGCFIYELLLGRTPFTDPRQAEIFKKAIRSD 661          
BLAST of mRNA_H-elongata_contig162841.3988.1 vs. uniprot
Match: A0A835Z7Z1_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7Z1_9STRA)

HSP 1 Score: 224 bits (571), Expect = 2.960e-67
Identity = 107/127 (84.25%), Postives = 115/127 (90.55%), Query Frame = 1
Query:    1 GGFHPSTAAFFFGCVVLPLQYLHHMSVAYRDLKPENLLLAQDGYLKVIDFGFAKRIPFKKDNVVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFSDPRQAEIFKKAIRSD 381
            GGF   TA F+ G VVL LQYLH MSVAYRDLKPENLL+AQDGY+K+IDFGFAKRIPFKK   +QTKSFTLCGTPDYLAPELVLSRGHDK+VDYWALGCF+YELL GRTPF+DPRQAEIFKKAIRSD
Sbjct:  483 GGFQAHTARFYGGSVVLCLQYLHKMSVAYRDLKPENLLVAQDGYIKMIDFGFAKRIPFKKGATLQTKSFTLCGTPDYLAPELVLSRGHDKSVDYWALGCFIYELLVGRTPFTDPRQAEIFKKAIRSD 609          
BLAST of mRNA_H-elongata_contig162841.3988.1 vs. uniprot
Match: A0A7S3XNP9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XNP9_HETAK)

HSP 1 Score: 196 bits (499), Expect = 8.540e-60
Identity = 90/126 (71.43%), Postives = 104/126 (82.54%), Query Frame = 1
Query:    1 GGFHPSTAAFFFGCVVLPLQYLHHMSVAYRDLKPENLLLAQDGYLKVIDFGFAKRIPFKKDNVVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFSDPRQAEIFKKAIRS 378
            GGF  STA F+  CVVL L+Y+H + VAYRDLKPENLLL   G+LK+IDFGFAK IPFKK N +QTKSFTLCGTPDYLAPELV S+GHDK+VDYWALGC +YEL+CG+TPF D  Q E+FKK + S
Sbjct:  133 GGFRVSTARFYAACVVLCLEYVHGLGVAYRDLKPENLLLDNQGFLKMIDFGFAKYIPFKKGNQIQTKSFTLCGTPDYLAPELVRSKGHDKSVDYWALGCLVYELICGQTPFQDNYQPEVFKKIVNS 258          
BLAST of mRNA_H-elongata_contig162841.3988.1 vs. uniprot
Match: A0A7S2CPB2_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CPB2_9STRA)

HSP 1 Score: 177 bits (449), Expect = 3.280e-52
Identity = 81/126 (64.29%), Postives = 95/126 (75.40%), Query Frame = 1
Query:    1 GGFHPSTAAFFFGCVVLPLQYLHHMSVAYRDLKPENLLLAQDGYLKVIDFGFAKRIPFKKDNVVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFSDPRQAEIFKKAIRS 378
            GGF  S A F+ GCV+   QY+H   VAYRDLKPENLL+   G+ K+IDFGFAKRIPF KD  V  KSFT+CGTP+YL+PEL+ S GHDK+VDYWALGC +YELL G+TPF D  Q EIF+K   S
Sbjct:  137 GGFVESAAMFYAGCVISAFQYVHDKGVAYRDLKPENLLIDSAGFCKIIDFGFAKRIPFMKDGKVCAKSFTICGTPEYLSPELIQSSGHDKSVDYWALGCLVYELLVGQTPFQDDNQREIFRKITNS 262          
BLAST of mRNA_H-elongata_contig162841.3988.1 vs. uniprot
Match: A0A4D9D4B2_9STRA (cGMP-dependent protein kinase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4B2_9STRA)

HSP 1 Score: 177 bits (449), Expect = 2.370e-50
Identity = 81/126 (64.29%), Postives = 95/126 (75.40%), Query Frame = 1
Query:    1 GGFHPSTAAFFFGCVVLPLQYLHHMSVAYRDLKPENLLLAQDGYLKVIDFGFAKRIPFKKDNVVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFSDPRQAEIFKKAIRS 378
            GGF      F+  C +  L Y+H   VAYRDLKPENLLL   GYLK+IDFGFAK +PF+K+  +Q K+FTLCGTP+YLAPELVLSRGHDK+VDYWA GC +YEL+ GRTPF D +  EIFKK I S
Sbjct:  358 GGFLKGHTQFYAACALSALDYIHKKDVAYRDLKPENLLLDSQGYLKIIDFGFAKTVPFQKNGNLQLKTFTLCGTPEYLAPELVLSRGHDKSVDYWAFGCLVYELMVGRTPFQDEQHDEIFKKIIHS 483          
BLAST of mRNA_H-elongata_contig162841.3988.1 vs. uniprot
Match: A0A7S2R9B3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9B3_9STRA)

HSP 1 Score: 170 bits (430), Expect = 2.860e-50
Identity = 76/126 (60.32%), Postives = 95/126 (75.40%), Query Frame = 1
Query:    1 GGFHPSTAAFFFGCVVLPLQYLHHMSVAYRDLKPENLLLAQDGYLKVIDFGFAKRIPFKKDNVVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFSDPRQAEIFKKAIRS 378
            GGF    + F+  CVV    ++H + VAYRDLKPENLL+   GY+KVIDFGFAK IPF+K   +  KSFTLCGTP+YL+PELVLS+GHDK+ DYWALGC LYELL G TPF++    E+FK+ ++S
Sbjct:   58 GGFVEPVSQFYCSCVVSAFSHIHGLGVAYRDLKPENLLMDATGYIKVIDFGFAKHIPFEKRGKIHHKSFTLCGTPEYLSPELVLSKGHDKSADYWALGCLLYELLVGHTPFANDNHQEVFKRILQS 183          
BLAST of mRNA_H-elongata_contig162841.3988.1 vs. uniprot
Match: A0A7S2G969_9STRA (cGMP-dependent protein kinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G969_9STRA)

HSP 1 Score: 177 bits (448), Expect = 2.880e-49
Identity = 73/126 (57.94%), Postives = 99/126 (78.57%), Query Frame = 1
Query:    1 GGFHPSTAAFFFGCVVLPLQYLHHMSVAYRDLKPENLLLAQDGYLKVIDFGFAKRIPFKKDNVVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFSDPRQAEIFKKAIRS 378
            GGF  S A F+ GC++    Y+H M+VAYRDLKPEN+++   GYLK+IDFGFAK IP+KK+  + + S+T+CGTP+YLAPEL+ S+GHDK+VDYWALGC +YEL+CGRTPF+   Q ++F+  + S
Sbjct:  564 GGFSDSAAMFYSGCIISAFHYIHEMNVAYRDLKPENIMIDSSGYLKMIDFGFAKTIPYKKNGEIHSSSYTICGTPEYLAPELIQSKGHDKSVDYWALGCLVYELICGRTPFAHENQRDLFQNILYS 689          
BLAST of mRNA_H-elongata_contig162841.3988.1 vs. uniprot
Match: A0A7S2RAC3_9STRA (cGMP-dependent protein kinase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAC3_9STRA)

HSP 1 Score: 176 bits (445), Expect = 8.710e-49
Identity = 81/126 (64.29%), Postives = 95/126 (75.40%), Query Frame = 1
Query:    1 GGFHPSTAAFFFGCVVLPLQYLHHMSVAYRDLKPENLLLAQDGYLKVIDFGFAKRIPFKKDNVVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCFLYELLCGRTPFSDPRQAEIFKKAIRS 378
            GGF    A F+ GCV+    Y+H   VAYRDLKPENLL+  +G+LKVIDFGFAKRIPF K+     KSFTLCGTP+YL+PELVLS+GHDK+ DYWALGC +YELL G TPF    Q EIFK+ I+S
Sbjct:  590 GGFSVPHAQFYSGCVISAFNYIHGKGVAYRDLKPENLLVTAEGFLKVIDFGFAKRIPFVKNGRTSAKSFTLCGTPEYLSPELVLSKGHDKSADYWALGCLVYELLIGHTPFQHDSQQEIFKRIIQS 715          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162841.3988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTW0_ECTSI8.630e-7790.55cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5JZB9_9PHAE5.430e-7492.13cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A835YV03_9STRA3.210e-6885.04cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A835Z7Z1_9STRA2.960e-6784.25cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A7S3XNP9_HETAK8.540e-6071.43Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2CPB2_9STRA3.280e-5264.29Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A4D9D4B2_9STRA2.370e-5064.29cGMP-dependent protein kinase n=1 Tax=Nannochlorop... [more]
A0A7S2R9B3_9STRA2.860e-5060.32Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G969_9STRA2.880e-4957.94cGMP-dependent protein kinase n=1 Tax=Dictyocha sp... [more]
A0A7S2RAC3_9STRA8.710e-4964.29cGMP-dependent protein kinase n=2 Tax=Rhizochromul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162841contigH-elongata_contig162841:476..856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score246.1
Seed ortholog evalue8.6e-63
Seed eggNOG ortholog2880.D8LTW0
KEGG koko:K07376,ko:K19477
KEGG Pathwayko04022,ko04270,ko04540,ko04611,ko04713,ko04714,ko04730,ko04740,ko04923,ko04924,ko04970,map04022,map04270,map04540,map04611,map04713,map04714,map04730,map04740,map04923,map04924,map04970
KEGG ModuleM00694
EggNOG free text desc.cGMP-dependent protein kinase activity
EggNOG OGsCOG0664@1,KOG0614@2759
EC2.7.11.12
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRmlC-like jelly roll fold
Ec32 orthologEc-12_004110.1
Exons1
Model size381
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929952.6942968-CDS-H-elongata_contig162841:475..8561622929952.6942968-CDS-H-elongata_contig162841:475..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162841 476..856 -
1691679221.178416-CDS-H-elongata_contig162841:475..8561691679221.178416-CDS-H-elongata_contig162841:475..856Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162841 476..856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162841.3988.1prot_H-elongata_contig162841.3988.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162841 476..856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162841.3988.1

>prot_H-elongata_contig162841.3988.1 ID=prot_H-elongata_contig162841.3988.1|Name=mRNA_H-elongata_contig162841.3988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
GGFHPSTAAFFFGCVVLPLQYLHHMSVAYRDLKPENLLLAQDGYLKVIDF
GFAKRIPFKKDNVVQTKSFTLCGTPDYLAPELVLSRGHDKAVDYWALGCF
LYELLCGRTPFSDPRQAEIFKKAIRSD
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mRNA from alignment at H-elongata_contig162841:476..856-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162841.3988.1 ID=mRNA_H-elongata_contig162841.3988.1|Name=mRNA_H-elongata_contig162841.3988.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=381bp|location=Sequence derived from alignment at H-elongata_contig162841:476..856- (Himanthalia elongata Himel1 dioecious)
GGGGGTTTCCATCCCTCGACGGCGGCCTTCTTCTTCGGCTGCGTGGTGCT ACCGCTGCAGTACCTGCACCACATGTCCGTGGCATACCGCGATCTCAAGC CGGAGAACCTGCTGCTCGCCCAGGACGGGTACCTGAAGGTGATCGACTTC GGCTTCGCCAAACGCATCCCCTTCAAGAAGGACAACGTCGTGCAGACCAA GTCGTTCACGCTTTGTGGCACACCCGACTACCTCGCCCCCGAGCTGGTAC TCTCGCGAGGACACGACAAGGCCGTAGACTACTGGGCGCTCGGCTGCTTC CTGTACGAGCTTCTCTGCGGCAGGACGCCGTTTTCTGACCCTCGTCAGGC GGAGATTTTCAAGAAGGCCATCCGCAGTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig162841:476..856-

>mRNA_H-elongata_contig162841.3988.1 ID=mRNA_H-elongata_contig162841.3988.1|Name=mRNA_H-elongata_contig162841.3988.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig162841:476..856- (Himanthalia elongata Himel1 dioecious)
GGGGGTTTCCATCCCTCGACGGCGGCCTTCTTCTTCGGCTGCGTGGTGCT
ACCGCTGCAGTACCTGCACCACATGTCCGTGGCATACCGCGATCTCAAGC
CGGAGAACCTGCTGCTCGCCCAGGACGGGTACCTGAAGGTGATCGACTTC
GGCTTCGCCAAACGCATCCCCTTCAAGAAGGACAACGTCGTGCAGACCAA
GTCGTTCACGCTTTGTGGCACACCCGACTACCTCGCCCCCGAGCTGGTAC
TCTCGCGAGGACACGACAAGGCCGTAGACTACTGGGCGCTCGGCTGCTTC
CTGTACGAGCTTCTCTGCGGCAGGACGCCGTTTTCTGACCCTCGTCAGGC
GGAGATTTTCAAGAAGGCCATCCGCAGTGACGGGGGTTTCCATCCCTCGA
CGGCGGCCTTCTTCTTCGGCTGCGTGGTGCTACCGCTGCAGTACCTGCAC
CACATGTCCGTGGCATACCGCGATCTCAAGCCGGAGAACCTGCTGCTCGC
CCAGGACGGGTACCTGAAGGTGATCGACTTCGGCTTCGCCAAACGCATCC
CCTTCAAGAAGGACAACGTCGTGCAGACCAAGTCGTTCACGCTTTGTGGC
ACACCCGACTACCTCGCCCCCGAGCTGGTACTCTCGCGAGGACACGACAA
GGCCGTAGACTACTGGGCGCTCGGCTGCTTCCTGTACGAGCTTCTCTGCG
GCAGGACGCCGTTTTCTGACCCTCGTCAGGCGGAGATTTTCAAGAAGGCC
ATCCGCAGTGAC
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