mRNA_H-elongata_contig162823.3987.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig162823.3987.1
Unique NamemRNA_H-elongata_contig162823.3987.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig162823.3987.1 vs. uniprot
Match: D7FPL9_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPL9_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 5.490e-47
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:   16 AHASGKIPRTANRREGRETDQEVLVARAMDRVLRPLFPPGYCFDTQMVATVQALEEGGDPVVVAINAASAALCVSNIPWDGPAGCVRIG 282
            AHA GKIPRT NRR+GRETD+EVLVARA+DRVLRPLFPPGYCFDTQ+VATVQALE GGDPVVVAINAASAALCVSNIPWDGPAGCVRIG
Sbjct:   70 AHALGKIPRTPNRRDGRETDEEVLVARAVDRVLRPLFPPGYCFDTQVVATVQALEAGGDPVVVAINAASAALCVSNIPWDGPAGCVRIG 158
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BLAST of mRNA_H-elongata_contig162823.3987.1 vs. uniprot
Match: A0A4D9CRD5_9STRA (Polyribonucleotide nucleotidyltransferase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CRD5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.310e-28
Identity = 53/94 (56.38%), Postives = 74/94 (78.72%), Query Frame = 1 
Query:    1 EWWRQAHASGKIPRTANRREGRETDQEVLVARAMDRVLRPLFPPGYCFDTQMVATVQALEEGGDPVVVAINAASAALCVSNIPWDGPAGCVRIG 282
            E+  +AHA G+I R+ NRREG ++DQE+L +R +DRV+RPLFP G+ +DTQ+V TV++ +   D  V+++N ASAAL VSNIPW+GP GCVR+G
Sbjct:  147 EYREKAHAFGRINRSVNRREGAQSDQEILASRVVDRVIRPLFPEGFIYDTQVVTTVESSDRQNDLTVLSVNTASAALAVSNIPWNGPVGCVRVG 240
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BLAST of mRNA_H-elongata_contig162823.3987.1 vs. uniprot
Match: A0A8K1CU08_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CU08_PYTOL)

HSP 1 Score: 111 bits (277), Expect = 1.880e-26
Identity = 52/87 (59.77%), Postives = 68/87 (78.16%), Query Frame = 1 
Query:   19 HASGKIPRTANRREGRETDQEVLVARAMDRVLRPLFPPGYCFDTQMVATVQALEEGGDPVVVAINAASAALCVSNIPWDGPAGCVRI 279
            HA+G IP TA R E   TD+E+L +R +DRV+RPLFP  Y  DTQ++ATVQ+L+   DP+V+AIN+ SAAL VS+IPW+GP GCVR+
Sbjct:  170 HAAGLIPETARRNEMSGTDEEILHSRVIDRVIRPLFPRDYVDDTQVIATVQSLDPNNDPIVLAINSTSAALAVSDIPWNGPVGCVRV 256
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BLAST of mRNA_H-elongata_contig162823.3987.1 vs. uniprot
Match: A0A485LGQ5_9STRA (Polynucleotide phosphorylase 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGQ5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.650e-25
Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:    7 WRQAHAS-GKIPRTANRREGRETDQEVLVARAMDRVLRPLFPPGYCFDTQMVATVQALEEGGDPVVVAINAASAALCVSNIPWDGPAGCVRI 279
            +R+ +AS G IP +A RRE   TD+EVL +R +DR++RPLFP GY F+TQ+VATVQ+ +   DPVV+A+N+ SAAL  SNIPW+GP GCVR+
Sbjct:  135 YREKYASTGTIPGSAKRREMSGTDEEVLKSRIVDRIVRPLFPKGYNFETQLVATVQSYDVDHDPVVLAVNSTSAALTTSNIPWNGPIGCVRV 226
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BLAST of mRNA_H-elongata_contig162823.3987.1 vs. uniprot
Match: A0A2D4C0M0_PYTIN (Polyribonucleotide nucleotidyltransferase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0M0_PYTIN)

HSP 1 Score: 108 bits (270), Expect = 1.660e-25
Identity = 51/87 (58.62%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:   19 HASGKIPRTANRREGRETDQEVLVARAMDRVLRPLFPPGYCFDTQMVATVQALEEGGDPVVVAINAASAALCVSNIPWDGPAGCVRI 279
            HA+G IP TA R E   TD+E+L +R +DRV+RPLFP  +  DTQ++ATVQ+L+   DP+V+AIN+ SAAL +SNIPW GP GCVR+
Sbjct:  164 HAAGLIPDTARRNEMAGTDEEILQSRVLDRVIRPLFPRDFADDTQVIATVQSLDPQNDPLVLAINSTSAALAISNIPWYGPVGCVRV 250
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BLAST of mRNA_H-elongata_contig162823.3987.1 vs. uniprot
Match: A0A484E9G9_BRELC (Polyribonucleotide nucleotidyltransferase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E9G9_BRELC)

HSP 1 Score: 107 bits (266), Expect = 5.740e-25
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:   16 AHASGKIPRTANRREGRETDQEVLVARAMDRVLRPLFPPGYCFDTQMVATVQALEEGGDPVVVAINAASAALCVSNIPWDGPAGCVRI 279
            +HA G IP   NRRE    D+EVL +R MDR +RPLFP  YC +TQ++ATVQ+ +   DP+VVA+N+ SAAL +S+IPW+GP GCVR+
Sbjct:  149 SHAVGLIPDNQNRREYTGNDEEVLQSRVMDRAIRPLFPRDYCENTQVLATVQSYDPNNDPLVVAVNSTSAALSISDIPWNGPIGCVRV 236
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BLAST of mRNA_H-elongata_contig162823.3987.1 vs. uniprot
Match: A0A1V9ZDA2_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZDA2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.810e-25
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = 1 
Query:   19 HASGKIPRTANRREGRETDQEVLVARAMDRVLRPLFPPGYCFDTQMVATVQALEEGGDPVVVAINAASAALCVSNIPWDGPAGCVRI 279
            +A+G IP +  RRE   TD E+L +R +DR++RPLFP GYC DTQ++ATVQ+ +   DPVV+A+N+ SA L  SNIPW+GP GCVR+
Sbjct:  134 YATGTIPGSVKRREMAGTDAEILKSRIVDRIVRPLFPKGYCNDTQIIATVQSYDIDHDPVVLAVNSTSATLMTSNIPWNGPIGCVRV 220
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BLAST of mRNA_H-elongata_contig162823.3987.1 vs. uniprot
Match: A0A067CF03_SAPPC (Polyribonucleotide nucleotidyltransferase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CF03_SAPPC)

HSP 1 Score: 106 bits (265), Expect = 7.820e-25
Identity = 50/86 (58.14%), Postives = 66/86 (76.74%), Query Frame = 1 
Query:   22 ASGKIPRTANRREGRETDQEVLVARAMDRVLRPLFPPGYCFDTQMVATVQALEEGGDPVVVAINAASAALCVSNIPWDGPAGCVRI 279
            A+G IP    RRE   TD E+L +R +DR++RPLFP GYC +TQ++ATVQ+ +   DPVV+A+N+ASAAL  SNIPW+GP GCVR+
Sbjct:  141 ATGTIPGGVKRREMMGTDAEILKSRIVDRIVRPLFPKGYCNETQIIATVQSYDVDHDPVVLAVNSASAALTTSNIPWNGPIGCVRV 226
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BLAST of mRNA_H-elongata_contig162823.3987.1 vs. uniprot
Match: A0A2P4XSW6_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSW6_9STRA)

HSP 1 Score: 106 bits (265), Expect = 7.840e-25
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:   16 AHASGKIPRTANRREGRETDQEVLVARAMDRVLRPLFPPGYCFDTQMVATVQALEEGGDPVVVAINAASAALCVSNIPWDGPAGCVRI 279
            +HA G IP    RRE    D+EVL +R +DR +RPLFP  YC DTQ++ATVQ+ +   DP+VVA+N+ASAAL +S+IPW+GP GCVR+
Sbjct:  150 SHAVGLIPDNQKRREFTGNDEEVLQSRVVDRAIRPLFPRDYCEDTQLLATVQSYDPNNDPLVVAVNSASAALSMSDIPWNGPVGCVRV 237
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BLAST of mRNA_H-elongata_contig162823.3987.1 vs. uniprot
Match: A0A225X1E6_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X1E6_9STRA)

HSP 1 Score: 106 bits (264), Expect = 1.070e-24
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:   16 AHASGKIPRTANRREGRETDQEVLVARAMDRVLRPLFPPGYCFDTQMVATVQALEEGGDPVVVAINAASAALCVSNIPWDGPAGCVRI 279
            +HA G IP    RRE    D+EVL +R +DR +RPLFP  YC DTQ++ATVQ+ +   DP+VVA+N+ASAAL +S+IPW+GP GCVR+
Sbjct:  149 SHAVGLIPDNQKRREFTGNDEEVLQSRVVDRAIRPLFPRDYCEDTQVLATVQSYDPNNDPLVVAVNSASAALSMSDIPWNGPVGCVRV 236
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig162823.3987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPL9_ECTSI5.490e-4792.13Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A4D9CRD5_9STRA1.310e-2856.38Polyribonucleotide nucleotidyltransferase n=3 Tax=... [more]
A0A8K1CU08_PYTOL1.880e-2659.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485LGQ5_9STRA1.650e-2558.70Polynucleotide phosphorylase 1 n=1 Tax=Aphanomyces... [more]
A0A2D4C0M0_PYTIN1.660e-2558.62Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A484E9G9_BRELC5.740e-2556.82Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A1V9ZDA2_9STRA7.810e-2556.32Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A067CF03_SAPPC7.820e-2558.14Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A2P4XSW6_9STRA7.840e-2556.82Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A225X1E6_9STRA1.070e-2456.82Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig162823contigH-elongata_contig162823:157..666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.0
Seed ortholog evalue2.6e-40
Seed eggNOG ortholog2880.D7FPL9
Preferred namePNPT1
KEGG rclassRC02795
KEGG koko:K00962,ko:K17491
KEGG ReactionR00437,R00438,R00439,R00440
KEGG Pathwayko00230,ko00240,ko03018,ko04212,ko04922,map00230,map00240,map03018,map04212,map04922
KEGG ModuleM00394
GOsGO:0000175,GO:0000177,GO:0000178,GO:0000957,GO:0000958,GO:0000959,GO:0000960,GO:0000962,GO:0000963,GO:0000964,GO:0000965,GO:0000966,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005783,GO:0005789,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006810,GO:0006839,GO:0006950,GO:0006979,GO:0006996,GO:0007005,GO:0007049,GO:0007050,GO:0007346,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008408,GO:0009056,GO:0009057,GO:0009653,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0022402,GO:0022607,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031984,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033554,GO:0034046,GO:0034097,GO:0034599,GO:0034641,GO:0034655,GO:0035198,GO:0035456,GO:0035458,GO:0035927,GO:0035928,GO:0040008,GO:0042175,GO:0042221,GO:0042788,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043457,GO:0043467,GO:0043487,GO:0043488,GO:0043631,GO:0043632,GO:0043633,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044528,GO:0045025,GO:0045786,GO:0045926,GO:0045930,GO:0045935,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051029,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051254,GO:0051259,GO:0051260,GO:0051716,GO:0051726,GO:0055085,GO:0060255,GO:0061013,GO:0061014,GO:0061980,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070206,GO:0070207,GO:0070584,GO:0070717,GO:0070887,GO:0071042,GO:0071047,GO:0071310,GO:0071345,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071850,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0090342,GO:0090501,GO:0090503,GO:0090615,GO:0090616,GO:0097159,GO:0097222,GO:0098798,GO:0098827,GO:0140053,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1903313,GO:1905354,GO:1990542,GO:1990904,GO:2000625,GO:2000627,GO:2000628,GO:2000630,GO:2000772
EggNOG free text desc.polyribonucleotide nucleotidyltransferase activity
EggNOG OGsCOG1185@1,KOG1067@2759
EC2.7.7.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03016,ko03019,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929952.6444757-CDS-H-elongata_contig162823:156..3091622929952.6444757-CDS-H-elongata_contig162823:156..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162823 157..309 +
1691679221.1576731-CDS-H-elongata_contig162823:156..3091691679221.1576731-CDS-H-elongata_contig162823:156..309Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162823 157..309 +
1622929952.6552641-CDS-H-elongata_contig162823:537..6661622929952.6552641-CDS-H-elongata_contig162823:537..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162823 538..666 +
1691679221.1699648-CDS-H-elongata_contig162823:537..6661691679221.1699648-CDS-H-elongata_contig162823:537..666Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig162823 538..666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig162823.3987.1prot_H-elongata_contig162823.3987.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig162823 157..666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig162823.3987.1

>prot_H-elongata_contig162823.3987.1 ID=prot_H-elongata_contig162823.3987.1|Name=mRNA_H-elongata_contig162823.3987.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
EWWRQAHASGKIPRTANRREGRETDQEVLVARAMDRVLRPLFPPGYCFDT
QMVATVQALEEGGDPVVVAINAASAALCVSNIPWDGPAGCVRIG
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mRNA from alignment at H-elongata_contig162823:157..666+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig162823.3987.1 ID=mRNA_H-elongata_contig162823.3987.1|Name=mRNA_H-elongata_contig162823.3987.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=510bp|location=Sequence derived from alignment at H-elongata_contig162823:157..666+ (Himanthalia elongata Himel1 dioecious)
GAATGGTGGAGACAGGCACATGCCTCGGGAAAGATTCCGCGGACGGCGAA
CCGGCGCGAGGGGCGAGAGACGGACCAAGAGGTCCTGGTGGCGAGGGCAA
TGGACAGGGTCCTGAGACCTCTGTTTCCTCCCGGGTACTGCTTCGATACC
CAGGTACTAAGCAAGCGCGCGTAGTTGTCGTTCCGCGATAATCCTCGTTG
TTGCTCGTGCAGCCGCCTAATTACGTGTACGTTTGTACTGTGTATGTTGA
ACCGTTGTGCCGTAGAGATCGTATCTATCGAACCGCTGTGCCTACCTTGT
TTTGCGCTATGTGGCCGTGTTCCATTTTGGAAGCTAATTGATCCCTCTGC
TGCTCACGCCGTATCGCCACGGTGCGAGGAGATGGTTGCGACGGTGCAAG
CACTGGAGGAAGGAGGGGACCCCGTCGTGGTCGCTATCAACGCAGCCTCA
GCGGCCCTGTGTGTGTCCAACATTCCTTGGGATGGACCAGCGGGCTGCGT
GCGAATAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig162823:157..666+

>mRNA_H-elongata_contig162823.3987.1 ID=mRNA_H-elongata_contig162823.3987.1|Name=mRNA_H-elongata_contig162823.3987.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig162823:157..666+ (Himanthalia elongata Himel1 dioecious)
GAATGGTGGAGACAGGCACATGCCTCGGGAAAGATTCCGCGGACGGCGAA
CCGGCGCGAGGGGCGAGAGACGGACCAAGAGGTCCTGGTGGCGAGGGCAA
TGGACAGGGTCCTGAGACCTCTGTTTCCTCCCGGGTACTGCTTCGATACC
CAGGAATGGTGGAGACAGGCACATGCCTCGGGAAAGATTCCGCGGACGGC
GAACCGGCGCGAGGGGCGAGAGACGGACCAAGAGGTCCTGGTGGCGAGGG
CAATGGACAGGGTCCTGAGACCTCTGTTTCCTCCCGGGTACTGCTTCGAT
ACCCAGATGGTTGCGACGGTGCAAGCACTGGAGGAAGGAGGGGACCCCGT
CGTGGTCGCTATCAACGCAGCCTCAGCGGCCCTGTGTGTGTCCAACATTC
CTTGGGATGGACCAGCGGGCTGCGTGCGAATAGGTATGGTTGCGACGGTG
CAAGCACTGGAGGAAGGAGGGGACCCCGTCGTGGTCGCTATCAACGCAGC
CTCAGCGGCCCTGTGTGTGTCCAACATTCCTTGGGATGGACCAGCGGGCT
GCGTGCGAATAGGT
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