mRNA_H-elongata_contig1628.3983.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1628.3983.1
Unique NamemRNA_H-elongata_contig1628.3983.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig1628.3983.1 vs. uniprot
Match: D8LQJ0_ECTSI (Dynein regulatory complex protein 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQJ0_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.550e-19
Identity = 46/57 (80.70%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 QIQAEIQGVSRALRESTKNLCRNLKDNPNISGNLLKIQTERTELIDLLNTMIREIAK 171
            +IQAEIQ VS ALRESTKNLCRNLKDNPNISGNLLKIQ ERTELIDLL    R+I +
Sbjct:  104 EIQAEIQEVSLALRESTKNLCRNLKDNPNISGNLLKIQRERTELIDLLTDSCRQIGE 160
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BLAST of mRNA_H-elongata_contig1628.3983.1 vs. uniprot
Match: A0A835YQ64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ64_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.230e-17
Identity = 42/63 (66.67%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 QIQAEIQGVSRALRESTKNLCRNLKDNPNISGNLLKIQTERTELIDLLNTMIREIAKVCRTNG 189
            ++Q EIQ VSRALR+ST+NLCRNLKDNPNISGNL KIQ ER ELIDLL+   RE+    + +G
Sbjct:  104 EVQGEIQDVSRALRDSTRNLCRNLKDNPNISGNLAKIQRERGELIDLLHRTCRELVDEGQVHG 166
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BLAST of mRNA_H-elongata_contig1628.3983.1 vs. uniprot
Match: A0A7S2BMJ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BMJ6_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.850e-17
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:    1 QIQAEIQGVSRALRESTKNLCRNLKDNPNISGNLLKIQTERTELIDLLNTMIREI 165
            ++Q EIQ VSRALRESTKNLCRNLKDNPNIS NL+KIQ ERTELI++L   +RE+
Sbjct:  130 EVQCEIQDVSRALRESTKNLCRNLKDNPNISDNLVKIQQERTELIEILAQTVREM 184
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BLAST of mRNA_H-elongata_contig1628.3983.1 vs. uniprot
Match: A0A7S2WML6_9STRA (Dynein regulatory complex protein 9 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WML6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 7.030e-17
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 QIQAEIQGVSRALRESTKNLCRNLKDNPNISGNLLKIQTERTELIDLLNTMIREI 165
            ++Q EIQ VSRALRESTK LCRNLK+NPNISGNL+KIQ ER EL+D+LN   RE+
Sbjct:   25 EVQNEIQDVSRALRESTKQLCRNLKENPNISGNLIKIQRERAELMDILNQTTREL 79
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BLAST of mRNA_H-elongata_contig1628.3983.1 vs. uniprot
Match: A0A7S2RW56_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RW56_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.570e-16
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:    1 QIQAEIQGVSRALRESTKNLCRNLKDNPNISGNLLKIQTERTELIDLLNTMIREI 165
            Q Q++IQ VSRALRESTKNLCRNLKDNPN++GNLLKIQ ER +L +L++  I EI
Sbjct:   91 QNQSDIQEVSRALRESTKNLCRNLKDNPNVTGNLLKIQDERNDLEELISKTISEI 145
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BLAST of mRNA_H-elongata_contig1628.3983.1 vs. uniprot
Match: A0A2R5G9F0_9STRA (IQ domain-containing protein G n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G9F0_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.040e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:    1 QIQAEIQGVSRALRESTKNLCRNLKDNPNISGNLLKIQTERTELIDLLNTMIREI 165
            Q Q EIQ VSRALRESTKNLCRNLKDNPN++GNLLKIQ ER EL +L+   + EI
Sbjct:   87 QNQQEIQEVSRALRESTKNLCRNLKDNPNVTGNLLKIQHERNELEELIAKTVTEI 141
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BLAST of mRNA_H-elongata_contig1628.3983.1 vs. uniprot
Match: W4FST6_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FST6_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.830e-14
Identity = 40/57 (70.18%), Postives = 46/57 (80.70%), Query Frame = 1 
Query:    7 QAEIQGVSRALRESTKNLCRNLKDNPNISGNLLKIQTERTELIDLLNTMIREIAKVC 177
            Q EIQ VSRALREST++LCRNLKDNPN  GNLLKIQ ER  L+DLL+   RE+ K+C
Sbjct:   94 QREIQEVSRALRESTRSLCRNLKDNPNFGGNLLKIQYERQALVDLLDETKREL-KMC 149
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BLAST of mRNA_H-elongata_contig1628.3983.1 vs. uniprot
Match: A0A7S1UJB5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJB5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.040e-14
Identity = 39/62 (62.90%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    4 IQAEIQGVSRALRESTKNLCRNLKDNPNISGNLLKIQTERTELIDLLNTMIREIAKVCRTNG 189
            +QAEIQ VSR LR+ST+NLCR+LKDNPNIS NL KIQ +R +LI LL T + EI  V    G
Sbjct:  152 VQAEIQDVSRILRDSTRNLCRSLKDNPNISENLFKIQRDRNQLIGLLQTTLEEIRDVRSFEG 213
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BLAST of mRNA_H-elongata_contig1628.3983.1 vs. uniprot
Match: A0A6G0W638_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W638_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.500e-14
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    7 QAEIQGVSRALRESTKNLCRNLKDNPNISGNLLKIQTERTELIDLLNTMIREI 165
            Q EIQ VSRALREST++LCRNLKDNPN  GNL+KIQ ER  LIDLL    RE+
Sbjct:   94 QREIQEVSRALRESTRSLCRNLKDNPNFGGNLMKIQNERQALIDLLTDTTREL 146
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BLAST of mRNA_H-elongata_contig1628.3983.1 vs. uniprot
Match: A0A7S1C9Q5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9Q5_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.970e-14
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 QIQAEIQGVSRALRESTKNLCRNLKDNPNISGNLLKIQTERTELIDLLNTMIREI 165
            +IQ EIQ +S ALRESTKNLCR+LKDNPNI  NLLKIQ ER +L DLL   +RE+
Sbjct:   91 EIQLEIQNLSHALRESTKNLCRSLKDNPNIGENLLKIQKEREQLQDLLGKTVREL 145
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1628.3983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQJ0_ECTSI9.550e-1980.70Dynein regulatory complex protein 9 n=1 Tax=Ectoca... [more]
A0A835YQ64_9STRA3.230e-1766.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2BMJ6_9STRA3.850e-1774.55Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S2WML6_9STRA7.030e-1772.73Dynein regulatory complex protein 9 n=1 Tax=Rhizoc... [more]
A0A7S2RW56_9STRA1.570e-1670.91Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A2R5G9F0_9STRA5.040e-1572.73IQ domain-containing protein G n=1 Tax=Hondaea fer... [more]
W4FST6_9STRA1.830e-1470.18Uncharacterized protein n=6 Tax=Aphanomyces astaci... [more]
A0A7S1UJB5_9STRA2.040e-1462.90Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6G0W638_9STRA2.500e-1471.70Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1C9Q5_9STRA3.970e-1469.09Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1628contigH-elongata_contig1628:15585..15779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.2e-15
Seed eggNOG ortholog2880.D8LQJ0
Preferred nameIQCG
GOsGO:0000003,GO:0000226,GO:0001578,GO:0002177,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030097,GO:0030154,GO:0030317,GO:0030544,GO:0031072,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0035082,GO:0036126,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048534,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0051179,GO:0051674,GO:0051704,GO:0060216,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0097223,GO:0097722,GO:0097729,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.sperm axoneme assembly
EggNOG OGs28IEG@1,2QQR7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929952.278197-CDS-H-elongata_contig1628:15584..157791622929952.278197-CDS-H-elongata_contig1628:15584..15779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1628 15585..15779 -
1691679220.9506578-CDS-H-elongata_contig1628:15584..157791691679220.9506578-CDS-H-elongata_contig1628:15584..15779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1628 15585..15779 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1628.3983.1prot_H-elongata_contig1628.3983.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1628 15585..15779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1628.3983.1

>prot_H-elongata_contig1628.3983.1 ID=prot_H-elongata_contig1628.3983.1|Name=mRNA_H-elongata_contig1628.3983.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
QIQAEIQGVSRALRESTKNLCRNLKDNPNISGNLLKIQTERTELIDLLNT
MIREIAKVCRTNGF*
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mRNA from alignment at H-elongata_contig1628:15585..15779-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1628.3983.1 ID=mRNA_H-elongata_contig1628.3983.1|Name=mRNA_H-elongata_contig1628.3983.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=195bp|location=Sequence derived from alignment at H-elongata_contig1628:15585..15779- (Himanthalia elongata Himel1 dioecious)
CAGATTCAAGCGGAAATCCAAGGAGTAAGTCGGGCGCTCCGAGAATCAAC
GAAAAATCTCTGCCGCAACCTTAAAGACAATCCCAACATCAGCGGAAATC
TGCTGAAGATTCAGACGGAGAGGACCGAGCTGATCGACCTCCTCAACACC
ATGATCAGAGAAATCGCCAAGGTATGCCGGACGAATGGGTTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig1628:15585..15779-

>mRNA_H-elongata_contig1628.3983.1 ID=mRNA_H-elongata_contig1628.3983.1|Name=mRNA_H-elongata_contig1628.3983.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig1628:15585..15779- (Himanthalia elongata Himel1 dioecious)
CAGATTCAAGCGGAAATCCAAGGAGTAAGTCGGGCGCTCCGAGAATCAAC
GAAAAATCTCTGCCGCAACCTTAAAGACAATCCCAACATCAGCGGAAATC
TGCTGAAGATTCAGACGGAGAGGACCGAGCTGATCGACCTCCTCAACACC
ATGATCAGAGAAATCGCCAAGGTATGCCGGACGAATGGGTTTTAACAGAT
TCAAGCGGAAATCCAAGGAGTAAGTCGGGCGCTCCGAGAATCAACGAAAA
ATCTCTGCCGCAACCTTAAAGACAATCCCAACATCAGCGGAAATCTGCTG
AAGATTCAGACGGAGAGGACCGAGCTGATCGACCTCCTCAACACCATGAT
CAGAGAAATCGCCAAGGTATGCCGGACGAATGGGTTTTAA
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